From 1e933a50922f20f19aa30f9373d1b264c63783a6 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Herv=C3=A9=20=20MENAGER?= <herve.menager@pasteur.fr>
Date: Fri, 10 Nov 2017 17:12:24 +0100
Subject: [PATCH] modifications to CompoundAction model
Former-commit-id: 4678a1c73aee4b4f1348db6ab23387076523b8b9
---
.../migrations/0025_auto_20171110_1046.py | 61 +++++++++++++++++++
.../migrations/0026_auto_20171110_1426.py | 20 ++++++
ippisite/ippidb/models.py | 5 +-
3 files changed, 84 insertions(+), 2 deletions(-)
create mode 100644 ippisite/ippidb/migrations/0025_auto_20171110_1046.py
create mode 100644 ippisite/ippidb/migrations/0026_auto_20171110_1426.py
diff --git a/ippisite/ippidb/migrations/0025_auto_20171110_1046.py b/ippisite/ippidb/migrations/0025_auto_20171110_1046.py
new file mode 100644
index 00000000..a8726087
--- /dev/null
+++ b/ippisite/ippidb/migrations/0025_auto_20171110_1046.py
@@ -0,0 +1,61 @@
+# -*- coding: utf-8 -*-
+# Generated by Django 1.11.4 on 2017-11-10 10:46
+from __future__ import unicode_literals
+
+from django.db import migrations, models
+import django.db.models.deletion
+
+
+class Migration(migrations.Migration):
+
+ dependencies = [
+ ('ippidb', '0024_auto_20170523_2000'),
+ ]
+
+ operations = [
+ migrations.AlterField(
+ model_name='bibliography',
+ name='in_cellulo',
+ field=models.BooleanField(default=False, verbose_name='in cellulo study'),
+ ),
+ migrations.AlterField(
+ model_name='bibliography',
+ name='in_silico',
+ field=models.BooleanField(default=False, verbose_name='in silico study'),
+ ),
+ migrations.AlterField(
+ model_name='bibliography',
+ name='in_vitro',
+ field=models.BooleanField(default=False, verbose_name='in vitro study'),
+ ),
+ migrations.AlterField(
+ model_name='bibliography',
+ name='in_vivo',
+ field=models.BooleanField(default=False, verbose_name='in vivo study'),
+ ),
+ migrations.AlterField(
+ model_name='bibliography',
+ name='pharmacokinetic',
+ field=models.BooleanField(default=False, verbose_name='pharmacokinetic study'),
+ ),
+ migrations.AlterField(
+ model_name='bibliography',
+ name='source',
+ field=models.CharField(choices=[('PM', 'PubMed ID'), ('PT', 'Patent'), ('DO', 'DOI ID')], default='PM', max_length=2, verbose_name='Bibliographic type'),
+ ),
+ migrations.AlterField(
+ model_name='bibliography',
+ name='xray',
+ field=models.BooleanField(default=False, verbose_name='X-Ray data'),
+ ),
+ migrations.AlterField(
+ model_name='compoundaction',
+ name='activation_mode',
+ field=models.CharField(choices=[('O', 'Orthosteric'), ('A', 'Allosteric'), ('U', 'Unspecified')], max_length=1, verbose_name='Activation mode'),
+ ),
+ migrations.AlterField(
+ model_name='protein',
+ name='organism',
+ field=models.ForeignKey(default='Homo sapiens', on_delete=django.db.models.deletion.CASCADE, to='ippidb.Taxonomy'),
+ ),
+ ]
diff --git a/ippisite/ippidb/migrations/0026_auto_20171110_1426.py b/ippisite/ippidb/migrations/0026_auto_20171110_1426.py
new file mode 100644
index 00000000..0dca58c5
--- /dev/null
+++ b/ippisite/ippidb/migrations/0026_auto_20171110_1426.py
@@ -0,0 +1,20 @@
+# -*- coding: utf-8 -*-
+# Generated by Django 1.11.4 on 2017-11-10 14:26
+from __future__ import unicode_literals
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+ dependencies = [
+ ('ippidb', '0025_auto_20171110_1046'),
+ ]
+
+ operations = [
+ migrations.AlterField(
+ model_name='compoundaction',
+ name='pdb_id',
+ field=models.CharField(blank=True, max_length=4, null=True, verbose_name='PDB ID'),
+ ),
+ ]
diff --git a/ippisite/ippidb/models.py b/ippisite/ippidb/models.py
index 232e595e..5e4c3d22 100644
--- a/ippisite/ippidb/models.py
+++ b/ippisite/ippidb/models.py
@@ -513,13 +513,14 @@ class CompoundPKResult(models.Model):
class CompoundAction(models.Model):
ACTIVATION_MODES = (
('O', 'Orthosteric'),
- ('A', 'Allosteric')
+ ('A', 'Allosteric'),
+ ('U', 'Unspecified')
)
compound = models.ForeignKey(Compound)
activation_mode = models.CharField(
'Activation mode', max_length=1, choices=ACTIVATION_MODES)
ppi = models.ForeignKey(Ppi)
- pdb_id = models.CharField('PDB ID', max_length=4)
+ pdb_id = models.CharField('PDB ID', max_length=4, blank=True, null=True)
nb_copy_compounds = models.IntegerField(
'Number of copies for the compound')
--
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