Merge branch 'provide-email-to-eutils' into 'master'

provide email as recommended by Bioservice

See merge request !37

ippisite/ippidb/ws.py

@@ -9,6 +9,7 @@ import requests
 from bioservices.eutils import EUtils
 from bioservices.uniprot import UniProt
 from bs4 import BeautifulSoup
+from django.conf import settings
 from requests.exceptions import ContentDecodingError
 from chembl_webresource_client.new_client import new_client
 
@@ -81,7 +82,7 @@ def get_pubmed_info(pmid: int) -> dict:
     :return: publication metadata (title, journal name, publication year, authors list).
     :rtype: dict
     """
-    eu = EUtils()
+    eu = EUtils(email=settings.EUTILS_EMAIL)
     r = eu.EFetch("pubmed", pmid, retmode="dict", rettype="abstract")
     if isinstance(r, int):
         raise PubMedEntryNotFound(pmid, r)
@@ -331,7 +332,7 @@ def get_taxonomy_info(taxonomy_id: str) -> dict:
     :return: Taxon metadata (scientific name).
     :rtype: dict
     """
-    eu = EUtils()
+    eu = EUtils(email=settings.EUTILS_EMAIL)
     r = eu.EFetch("taxonomy", taxonomy_id, retmode="dict")
     scientific_name = r["TaxaSet"]["Taxon"]["ScientificName"]
     return {"scientific_name": scientific_name}

ippisite/ippisite/settings.py

@@ -229,6 +229,9 @@ LABLINKS_RESOURCE_DESCRIPTION = (
 )
 LABLINKS_CONTACT_EMAIL = "ippidb@pasteur.fr"
 
+# BioServices settings
+EUTILS_EMAIL = "ippidb@pasteur.fr"
+
 # MAINTENANCE SETTINGS
 
 # if True the maintenance-mode will be activated