From 241d383b97f84161a047dff61b422761eca79ee3 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Herv=C3=A9=20=20MENAGER?= <herve.menager@pasteur.fr>
Date: Tue, 14 Feb 2017 13:57:07 +0100
Subject: [PATCH] first project commit
---
ippisite/db.sqlite3 | Bin 0 -> 233472 bytes
ippisite/ippidb/__init__.py | 0
ippisite/ippidb/admin.py | 5 +
ippisite/ippidb/apps.py | 5 +
ippisite/ippidb/migrations/0001_initial.py | 125 +++++
ippisite/ippidb/migrations/__init__.py | 0
ippisite/ippidb/models.py | 469 ++++++++++++++++++
ippisite/ippidb/templates/base.html | 36 ++
.../templates/ippidb/bibliography_detail.html | 19 +
.../templates/ippidb/bibliography_form.html | 10 +
.../templates/ippidb/bibliography_list.html | 11 +
ippisite/ippidb/tests.py | 3 +
ippisite/ippidb/urls.py | 11 +
ippisite/ippidb/views.py | 26 +
ippisite/ippidb/ws.py | 15 +
ippisite/ippisite/__init__.py | 0
ippisite/ippisite/settings.py | 122 +++++
ippisite/ippisite/urls.py | 22 +
ippisite/ippisite/wsgi.py | 16 +
ippisite/manage.py | 22 +
20 files changed, 917 insertions(+)
create mode 100644 ippisite/db.sqlite3
create mode 100644 ippisite/ippidb/__init__.py
create mode 100644 ippisite/ippidb/admin.py
create mode 100644 ippisite/ippidb/apps.py
create mode 100644 ippisite/ippidb/migrations/0001_initial.py
create mode 100644 ippisite/ippidb/migrations/__init__.py
create mode 100644 ippisite/ippidb/models.py
create mode 100644 ippisite/ippidb/templates/base.html
create mode 100644 ippisite/ippidb/templates/ippidb/bibliography_detail.html
create mode 100644 ippisite/ippidb/templates/ippidb/bibliography_form.html
create mode 100644 ippisite/ippidb/templates/ippidb/bibliography_list.html
create mode 100644 ippisite/ippidb/tests.py
create mode 100644 ippisite/ippidb/urls.py
create mode 100644 ippisite/ippidb/views.py
create mode 100644 ippisite/ippidb/ws.py
create mode 100644 ippisite/ippisite/__init__.py
create mode 100644 ippisite/ippisite/settings.py
create mode 100644 ippisite/ippisite/urls.py
create mode 100644 ippisite/ippisite/wsgi.py
create mode 100755 ippisite/manage.py
diff --git a/ippisite/db.sqlite3 b/ippisite/db.sqlite3
new file mode 100644
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diff --git a/ippisite/ippidb/__init__.py b/ippisite/ippidb/__init__.py
new file mode 100644
index 00000000..e69de29b
diff --git a/ippisite/ippidb/admin.py b/ippisite/ippidb/admin.py
new file mode 100644
index 00000000..c4cbdb92
--- /dev/null
+++ b/ippisite/ippidb/admin.py
@@ -0,0 +1,5 @@
+from django.contrib import admin
+
+from .models import Bibliography
+
+admin.site.register(Bibliography)
diff --git a/ippisite/ippidb/apps.py b/ippisite/ippidb/apps.py
new file mode 100644
index 00000000..14866c28
--- /dev/null
+++ b/ippisite/ippidb/apps.py
@@ -0,0 +1,5 @@
+from django.apps import AppConfig
+
+
+class IppidbConfig(AppConfig):
+ name = 'ippidb'
diff --git a/ippisite/ippidb/migrations/0001_initial.py b/ippisite/ippidb/migrations/0001_initial.py
new file mode 100644
index 00000000..fa2e4ae0
--- /dev/null
+++ b/ippisite/ippidb/migrations/0001_initial.py
@@ -0,0 +1,125 @@
+# -*- coding: utf-8 -*-
+# Generated by Django 1.10.5 on 2017-02-14 11:12
+from __future__ import unicode_literals
+
+from django.db import migrations, models
+import django.db.models.deletion
+
+
+class Migration(migrations.Migration):
+
+ initial = True
+
+ dependencies = [
+ ]
+
+ operations = [
+ migrations.CreateModel(
+ name='Bibliography',
+ fields=[
+ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+ ('source', models.CharField(choices=[('PM', 'PubMed article'), ('PT', 'Patent')], max_length=2, verbose_name='Bibliographic type')),
+ ('id_source', models.CharField(max_length=25, verbose_name='Bibliographic ID')),
+ ('title', models.CharField(max_length=300, verbose_name='Title')),
+ ('journal_name', models.CharField(max_length=50, verbose_name='Journal name')),
+ ('authors_list', models.CharField(max_length=500, verbose_name='Authors list')),
+ ('biblio_year', models.PositiveSmallIntegerField(verbose_name='Year')),
+ ('cytotox', models.BooleanField(verbose_name='Cytotoxicity data')),
+ ('in_silico', models.BooleanField(verbose_name='in silico study performed')),
+ ('in_vitro', models.BooleanField(verbose_name='in vitro study performed')),
+ ('in_vivo', models.BooleanField(verbose_name='in vivo study performed')),
+ ('in_cellulo', models.BooleanField(verbose_name='in cellulo study performed')),
+ ('pharmacokinetic', models.BooleanField(verbose_name='pharmacokinetic study performed')),
+ ('xray', models.BooleanField(verbose_name='contains xray data')),
+ ],
+ ),
+ migrations.CreateModel(
+ name='BindingSite',
+ fields=[
+ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+ ],
+ ),
+ migrations.CreateModel(
+ name='Complex',
+ fields=[
+ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+ ('copy_nb', models.IntegerField(verbose_name='Number of copies')),
+ ],
+ ),
+ migrations.CreateModel(
+ name='Domain',
+ fields=[
+ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+ ('pfam_acc', models.CharField(max_length=10, unique=True, verbose_name='Pfam Accession')),
+ ('pfam_id', models.CharField(max_length=20, verbose_name='Pfam Family Identifier')),
+ ('pfam_description', models.CharField(max_length=100, verbose_name='Pfam Description')),
+ ('domainfamily', models.CharField(max_length=25, verbose_name='')),
+ ],
+ ),
+ migrations.CreateModel(
+ name='MolecularFunction',
+ fields=[
+ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+ ('go_id', models.CharField(max_length=10, unique=True, verbose_name='Gene Ontology ID')),
+ ('description', models.CharField(max_length=500, verbose_name='description')),
+ ],
+ ),
+ migrations.CreateModel(
+ name='Ppi',
+ fields=[
+ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+ ('binding_site_id_1', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='binding_site_id_1', to='ippidb.BindingSite')),
+ ('binding_site_id_2', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='binding_site_id_2', to='ippidb.BindingSite')),
+ ('complex_id_1', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='cplx_id_1', to='ippidb.Complex')),
+ ('complex_id_2', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='cplx_id_2', to='ippidb.Complex')),
+ ],
+ ),
+ migrations.CreateModel(
+ name='PpiArchitecture',
+ fields=[
+ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+ ('pdb_id', models.CharField(max_length=4, verbose_name='PDB ID')),
+ ('ppi_id', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.Ppi')),
+ ],
+ ),
+ migrations.CreateModel(
+ name='Protein',
+ fields=[
+ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+ ('uniprot_id', models.CharField(max_length=10, unique=True, verbose_name='Uniprot ID')),
+ ('recommended_name_long', models.CharField(max_length=75, verbose_name='Uniprot Recommended Name (long)')),
+ ('short_name', models.CharField(max_length=50, verbose_name='Short name')),
+ ('gene_name', models.CharField(max_length=30, unique=True, verbose_name='Gene name')),
+ ('entry_name', models.CharField(max_length=30, verbose_name='Entry name')),
+ ('molecular_functions', models.ManyToManyField(to='ippidb.MolecularFunction')),
+ ],
+ ),
+ migrations.CreateModel(
+ name='Taxonomy',
+ fields=[
+ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+ ('taxonomy_id', models.DecimalField(decimal_places=0, max_digits=4, unique=True, verbose_name='NCBI TaxID')),
+ ('name', models.CharField(max_length=200, verbose_name='Organism name')),
+ ],
+ ),
+ migrations.AddField(
+ model_name='protein',
+ name='organism',
+ field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.Taxonomy'),
+ ),
+ migrations.AddField(
+ model_name='complex',
+ name='protein_id',
+ field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.Protein'),
+ ),
+ migrations.AddField(
+ model_name='bindingsite',
+ name='domain_id',
+ field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.Domain'),
+ ),
+ migrations.AddField(
+ model_name='bindingsite',
+ name='protein_id',
+ field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.Protein'),
+ ),
+ ]
diff --git a/ippisite/ippidb/migrations/__init__.py b/ippisite/ippidb/migrations/__init__.py
new file mode 100644
index 00000000..e69de29b
diff --git a/ippisite/ippidb/models.py b/ippisite/ippidb/models.py
new file mode 100644
index 00000000..661967d8
--- /dev/null
+++ b/ippisite/ippidb/models.py
@@ -0,0 +1,469 @@
+from __future__ import unicode_literals
+
+from django.db import models
+from django.forms import ModelForm
+
+class Bibliography(models.Model):
+ """
+ Bibliography data table
+ """
+ SOURCES = (
+ ('PM', 'PubMed article'),
+ ('PT', 'Patent')
+ )
+ source = models.CharField('Bibliographic type', max_length=2, choices=SOURCES)
+ id_source = models.CharField('Bibliographic ID', max_length=25)
+ title = models.CharField('Title', max_length=300)
+ journal_name = models.CharField('Journal name', max_length=50)
+ authors_list = models.CharField('Authors list', max_length=500)
+ biblio_year = models.PositiveSmallIntegerField('Year')
+ cytotox = models.BooleanField('Cytotoxicity data')
+ in_silico = models.BooleanField('in silico study performed')
+ in_vitro = models.BooleanField('in vitro study performed')
+ in_vivo = models.BooleanField('in vivo study performed')
+ in_cellulo = models.BooleanField('in cellulo study performed')
+ pharmacokinetic = models.BooleanField('pharmacokinetic study performed')
+ xray = models.BooleanField('contains xray data')
+
+ def get_absolute_url(self):
+ return reverse('bibliography-detail', args=[str(self.id)])
+
+ def save(self, *args, **kwargs):
+ pubmed_info = get_pubmed_info(self.id_source)
+ self.title = pubmed_info['title']
+ self.journal_name = pubmed_info['journal_name']
+ self.authors_list = pubmed_info['authors_list']
+ self.biblio_year = pubmed_info['biblio_year']
+ super(Bibliography, self).save(*args, **kwargs)
+
+class BibliographyForm(ModelForm):
+ class Meta:
+ model = Bibliography
+ fields = '__all__'
+
+class Taxonomy(models.Model):
+ taxonomy_id = models.DecimalField('NCBI TaxID', unique=True, max_digits=4, decimal_places=0)
+ name = models.CharField('Organism name', max_length=200)
+
+class MolecularFunction(models.Model):
+ go_id = models.CharField('Gene Ontology ID', unique=True, max_length=10) # GO term id format: 'GO:0000000'
+ description = models.CharField('description', max_length=500)
+
+class Protein(models.Model):
+ uniprot_id = models.CharField('Uniprot ID', unique=True, max_length=10)
+ recommended_name_long = models.CharField('Uniprot Recommended Name (long)', max_length=75)
+ short_name = models.CharField('Short name', max_length=50)
+ gene_name = models.CharField('Gene name', unique=True, max_length=30)
+ entry_name = models.CharField('Entry name', max_length=30)
+ organism = models.ForeignKey('Taxonomy')
+ molecular_functions = models.ManyToManyField(MolecularFunction)
+
+class Domain(models.Model):
+ pfam_acc = models.CharField('Pfam Accession', max_length=10, unique=True)
+ pfam_id = models.CharField('Pfam Family Identifier', max_length=20)
+ pfam_description = models.CharField('Pfam Description', max_length=100)
+ domainfamily = models.CharField('', max_length=25) #TODO: what is this field? check database contents
+
+class BindingSite(models.Model):
+ protein_id = models.ForeignKey('Protein')
+ domain_id = models.ForeignKey('Domain')
+
+class Complex(models.Model):
+ protein_id = models.ForeignKey('Protein')
+ copy_nb = models.IntegerField('Number of copies')
+
+class Ppi(models.Model):
+ complex_id_1 = models.ForeignKey(Complex, related_name='cplx_id_1')
+ complex_id_2 = models.ForeignKey(Complex, related_name='cplx_id_2')
+ binding_site_id_1 = models.ForeignKey(BindingSite, related_name='binding_site_id_1')
+ binding_site_id_2 = models.ForeignKey(BindingSite, related_name='binding_site_id_2')
+
+class PpiArchitecture(models.Model):
+ ppi_id = models.ForeignKey(Ppi)
+ pdb_id = models.CharField('PDB ID', max_length=4)
+
+"""
+
+
+
+
+
+class Actionevidencetest(models.Model):
+ idcmpdaction = models.ForeignKey('Cmpdaction', models.DO_NOTHING, db_column='IDCmpdAction') # Field name made lowercase.
+ idtestactivity = models.ForeignKey('Testactivitydescription', models.DO_NOTHING, db_column='IDTestActivity') # Field name made lowercase.
+ nbcopycompound = models.IntegerField(db_column='NbCopyCompound', blank=True, null=True) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'actionEvidenceTest'
+ unique_together = (('idcmpdaction', 'idtestactivity'),)
+
+
+class Actionevidencexray(models.Model):
+ idcmpdaction = models.ForeignKey('Cmpdaction', models.DO_NOTHING, db_column='IDCmpdAction') # Field name made lowercase.
+ codepdb = models.CharField(db_column='CodePDB', max_length=4) # Field name made lowercase.
+ nbcopycompound = models.IntegerField(db_column='NbCopyCompound') # Field name made lowercase.
+ idbindingsite = models.ForeignKey('Bindingsite', models.DO_NOTHING, db_column='IDBindingSite') # Field name made lowercase.
+ idbiblio = models.ForeignKey('Biblio', models.DO_NOTHING, db_column='IDBiblio', blank=True, null=True) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'actionEvidenceXRay'
+ unique_together = (('idcmpdaction', 'codepdb'),)
+
+
+class Biblio(models.Model):
+ idbiblio = models.AutoField(db_column='IDBiblio', primary_key=True) # Field name made lowercase.
+ source = models.CharField(db_column='Source', max_length=7) # Field name made lowercase.
+ idsource = models.CharField(db_column='IDSource', max_length=25) # Field name made lowercase.
+ title = models.CharField(db_column='Title', max_length=300) # Field name made lowercase.
+ listauthor = models.CharField(db_column='ListAuthor', max_length=500) # Field name made lowercase.
+ yearbiblio = models.IntegerField(db_column='YearBiblio') # Field name made lowercase.
+ cytotox = models.CharField(db_column='Cytotox', max_length=1) # Field name made lowercase.
+ insilico = models.CharField(db_column='InSilico', max_length=1) # Field name made lowercase.
+ invitro = models.CharField(db_column='InVitro', max_length=1) # Field name made lowercase.
+ invivo = models.CharField(db_column='InVivo', max_length=1) # Field name made lowercase.
+ incellulo = models.CharField(db_column='InCellulo', max_length=1) # Field name made lowercase.
+ pharmacokinetic = models.CharField(db_column='Pharmacokinetic', max_length=1) # Field name made lowercase.
+ xray = models.CharField(db_column='XRay', max_length=1) # Field name made lowercase.
+ journalname = models.CharField(db_column='JournalName', max_length=50, blank=True, null=True) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'biblio'
+ unique_together = (('source', 'idsource'),)
+
+
+class Bindingsite(models.Model):
+ idbindingsite = models.IntegerField(db_column='IDBindingSite') # Field name made lowercase.
+ idprotein = models.ForeignKey('Protein', models.DO_NOTHING, db_column='IDProtein') # Field name made lowercase.
+ iddomain = models.ForeignKey('Domain', models.DO_NOTHING, db_column='IDDomain') # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'bindingSite'
+ unique_together = (('idbindingsite', 'idprotein', 'iddomain'),)
+
+
+class Bindingsiteevidence(models.Model):
+ idppi = models.ForeignKey('Ppi', models.DO_NOTHING, db_column='IDPPI') # Field name made lowercase.
+ idbindingsite = models.ForeignKey(Bindingsite, models.DO_NOTHING, db_column='IDBindingSite') # Field name made lowercase.
+ codepdb = models.CharField(db_column='CodePDB', max_length=4) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'bindingSiteEvidence'
+ unique_together = (('idppi', 'idbindingsite'),)
+
+
+class Cmpdaction(models.Model):
+ idcmpdaction = models.AutoField(db_column='IDCmpdAction', primary_key=True) # Field name made lowercase.
+ idcomplexebound = models.ForeignKey('Complexe', models.DO_NOTHING, db_column='IDComplexeBound') # Field name made lowercase.
+ idcompound = models.ForeignKey('Compound', models.DO_NOTHING, db_column='IDCompound') # Field name made lowercase.
+ activationmode = models.CharField(db_column='ActivationMode', max_length=11) # Field name made lowercase.
+ modulationtype = models.CharField(db_column='ModulationType', max_length=10) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'cmpdAction'
+
+
+class Cmpdactiveresult(models.Model):
+ idcompound = models.ForeignKey('Compound', models.DO_NOTHING, db_column='IDCompound') # Field name made lowercase.
+ idtestactivity = models.ForeignKey('Testactivitydescription', models.DO_NOTHING, db_column='IDTestActivity') # Field name made lowercase.
+ activitytype = models.CharField(db_column='ActivityType', max_length=5) # Field name made lowercase.
+ activity = models.DecimalField(db_column='Activity', max_digits=4, decimal_places=2) # Field name made lowercase.
+ pourcentinhib = models.IntegerField(db_column='PourcentInhib', blank=True, null=True) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'cmpdActiveResult'
+ unique_together = (('idcompound', 'idtestactivity', 'activitytype'),)
+
+
+class Cmpdcytotoxresult(models.Model):
+ idcompound = models.ForeignKey('Compound', models.DO_NOTHING, db_column='IDCompound') # Field name made lowercase.
+ idtestcytotox = models.ForeignKey('Testcytotoxdescription', models.DO_NOTHING, db_column='IDTestCytotox') # Field name made lowercase.
+ toxicity = models.CharField(db_column='Toxicity', max_length=1) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'cmpdCytotoxResult'
+ unique_together = (('idcompound', 'idtestcytotox'),)
+
+
+class Cmpdinactiveresult(models.Model):
+ idtestactivity = models.ForeignKey('Testactivitydescription', models.DO_NOTHING, db_column='IDTestActivity') # Field name made lowercase.
+ idcompound = models.ForeignKey('Compound', models.DO_NOTHING, db_column='IDCompound') # Field name made lowercase.
+ pourcentinhib = models.IntegerField(db_column='PourcentInhib', blank=True, null=True) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'cmpdInactiveResult'
+ unique_together = (('idtestactivity', 'idcompound'),)
+
+
+class Cmpdpkresult(models.Model):
+ idcompound = models.ForeignKey('Compound', models.DO_NOTHING, db_column='IDCompound') # Field name made lowercase.
+ idtestpk = models.ForeignKey('Testpkdescription', models.DO_NOTHING, db_column='IDTestPK') # Field name made lowercase.
+ tolerated = models.CharField(db_column='Tolerated', max_length=1) # Field name made lowercase.
+ auc = models.IntegerField(db_column='AUC', blank=True, null=True) # Field name made lowercase.
+ clearance = models.DecimalField(db_column='Clearance', max_digits=7, decimal_places=3, blank=True, null=True) # Field name made lowercase.
+ cmax = models.DecimalField(db_column='Cmax', max_digits=7, decimal_places=3, blank=True, null=True) # Field name made lowercase.
+ oralbioavailability = models.IntegerField(db_column='OralBioavailability', blank=True, null=True) # Field name made lowercase.
+ tdemi = models.IntegerField(db_column='Tdemi', blank=True, null=True) # Field name made lowercase.
+ tmax = models.IntegerField(db_column='Tmax', blank=True, null=True) # Field name made lowercase.
+ voldistribution = models.DecimalField(db_column='VolDistribution', max_digits=5, decimal_places=2, blank=True, null=True) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'cmpdPKResult'
+ unique_together = (('idcompound', 'idtestpk'),)
+
+
+class Complexe(models.Model):
+ idcomplexe = models.AutoField(db_column='IDComplexe', primary_key=True) # Field name made lowercase.
+ idprotein = models.ForeignKey('Protein', models.DO_NOTHING, db_column='IDProtein') # Field name made lowercase.
+ nbcopy = models.IntegerField(db_column='NbCopy') # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'complexe'
+
+
+class Compound(models.Model):
+ idcompound = models.AutoField(db_column='IDCompound', primary_key=True) # Field name made lowercase.
+ canonicalsmile = models.CharField(db_column='CanonicalSmile', unique=True, max_length=250) # Field name made lowercase.
+ physchemfilter = models.CharField(db_column='PhysChemFilter', max_length=2) # Field name made lowercase.
+ htsfilter = models.CharField(db_column='HTSFilter', max_length=1) # Field name made lowercase.
+ ismacrocycle = models.CharField(db_column='IsMacrocycle', max_length=1) # Field name made lowercase.
+ aromaticratio = models.DecimalField(db_column='AromaticRatio', max_digits=3, decimal_places=2) # Field name made lowercase.
+ balabanindex = models.DecimalField(db_column='BalabanIndex', max_digits=3, decimal_places=2) # Field name made lowercase.
+ csp3ratio = models.DecimalField(db_column='Csp3Ratio', max_digits=3, decimal_places=2) # Field name made lowercase.
+ dhpetitjean = models.DecimalField(db_column='DhPetitjean', max_digits=4, decimal_places=2) # Field name made lowercase.
+ diamgraphnonhpetitjean = models.IntegerField(db_column='DiamGraphNonHPetitjean') # Field name made lowercase.
+ gcmolarrefractivity = models.DecimalField(db_column='GCMolarRefractivity', max_digits=5, decimal_places=2) # Field name made lowercase.
+ gpetitjean = models.DecimalField(db_column='GPetitjean', max_digits=3, decimal_places=2) # Field name made lowercase.
+ igpetitjean = models.DecimalField(db_column='IgPetitjean', max_digits=3, decimal_places=2) # Field name made lowercase.
+ logd = models.DecimalField(db_column='LogD', max_digits=4, decimal_places=2) # Field name made lowercase.
+ alogp = models.DecimalField(db_column='ALogP', max_digits=4, decimal_places=2) # Field name made lowercase.
+ meanatomvolvdw = models.DecimalField(db_column='MeanAtomVolVdW', max_digits=4, decimal_places=2) # Field name made lowercase.
+ molecularweight = models.DecimalField(db_column='MolecularWeight', max_digits=6, decimal_places=2) # Field name made lowercase.
+ nbacceptorh = models.IntegerField(db_column='NbAcceptorH') # Field name made lowercase.
+ nbaliphaticsamines = models.IntegerField(db_column='NbAliphaticsAmines') # Field name made lowercase.
+ nbaromaticbonds = models.IntegerField(db_column='NbAromaticBonds') # Field name made lowercase.
+ nbaromaticsether = models.IntegerField(db_column='NbAromaticsEther') # Field name made lowercase.
+ nbaromaticssssr = models.IntegerField(db_column='NbAromaticsSSSR') # Field name made lowercase.
+ nbatom = models.IntegerField(db_column='NbAtom') # Field name made lowercase.
+ nbatomnonh = models.IntegerField(db_column='NbAtomNonH') # Field name made lowercase.
+ nbbenzlikerings = models.IntegerField(db_column='NbBenzLikeRings') # Field name made lowercase.
+ nbbonds = models.IntegerField(db_column='NbBonds') # Field name made lowercase.
+ nbbondsnonh = models.IntegerField(db_column='NbBondsNonH') # Field name made lowercase.
+ nbbr = models.IntegerField(db_column='NbBr') # Field name made lowercase.
+ nbc = models.IntegerField(db_column='NbC') # Field name made lowercase.
+ nbchiralcenters = models.IntegerField(db_column='NbChiralCenters') # Field name made lowercase.
+ nbcircuits = models.IntegerField(db_column='NbCircuits') # Field name made lowercase.
+ nbcl = models.IntegerField(db_column='NbCl') # Field name made lowercase.
+ nbcsp2 = models.IntegerField(db_column='NbCsp2') # Field name made lowercase.
+ nbcsp3 = models.IntegerField(db_column='NbCsp3') # Field name made lowercase.
+ nbdonorh = models.IntegerField(db_column='NbDonorH') # Field name made lowercase.
+ nbdoublebonds = models.IntegerField(db_column='NbDoubleBonds') # Field name made lowercase.
+ nbf = models.IntegerField(db_column='NbF') # Field name made lowercase.
+ nbi = models.IntegerField(db_column='NbI') # Field name made lowercase.
+ nbmultbonds = models.IntegerField(db_column='NbMultBonds') # Field name made lowercase.
+ nbn = models.IntegerField(db_column='NbN') # Field name made lowercase.
+ nbo = models.IntegerField(db_column='NbO') # Field name made lowercase.
+ nbrings = models.IntegerField(db_column='NbRings') # Field name made lowercase.
+ nbrotatablebonds = models.IntegerField(db_column='NbRotatableBonds') # Field name made lowercase.
+ radiusgraphnonhpetitjean = models.IntegerField(db_column='RadiusGraphNonHPetitjean') # Field name made lowercase.
+ randicindex = models.DecimalField(db_column='RandicIndex', max_digits=4, decimal_places=2) # Field name made lowercase.
+ rdf070m = models.DecimalField(db_column='RDF070m', max_digits=5, decimal_places=2) # Field name made lowercase.
+ rotatablebondfraction = models.DecimalField(db_column='RotatableBondFraction', max_digits=3, decimal_places=2) # Field name made lowercase.
+ sumatompolar = models.DecimalField(db_column='SumAtomPolar', max_digits=5, decimal_places=2) # Field name made lowercase.
+ sumatomvolvdw = models.DecimalField(db_column='SumAtomVolVdW', max_digits=6, decimal_places=2) # Field name made lowercase.
+ surfacevdwpetitjean = models.DecimalField(db_column='SurfaceVDWPetitjean', max_digits=6, decimal_places=2) # Field name made lowercase.
+ thicknesspetitjean = models.DecimalField(db_column='ThicknessPetitjean', max_digits=4, decimal_places=2) # Field name made lowercase.
+ tpsa = models.DecimalField(db_column='TPSA', max_digits=5, decimal_places=2) # Field name made lowercase.
+ ui = models.DecimalField(db_column='Ui', max_digits=4, decimal_places=2) # Field name made lowercase.
+ volvdwpetitjean = models.DecimalField(db_column='VolVDWPetitjean', max_digits=7, decimal_places=2) # Field name made lowercase.
+ wienerindex = models.IntegerField(db_column='WienerIndex') # Field name made lowercase.
+ cmpdnamesh = models.CharField(db_column='CmpdNameSh', max_length=20, blank=True, null=True) # Field name made lowercase.
+ idpubchem = models.CharField(db_column='IdPubchem', max_length=10, blank=True, null=True) # Field name made lowercase.
+ idchemspider = models.CharField(db_column='IdChemspider', max_length=10, blank=True, null=True) # Field name made lowercase.
+ idchembl = models.CharField(db_column='IDChembl', max_length=30, blank=True, null=True) # Field name made lowercase.
+ cmpdiupacname = models.CharField(db_column='CmpdIUPACName', max_length=255, blank=True, null=True) # Field name made lowercase.
+ idmddrcompound = models.ForeignKey('Mddrcompound', models.DO_NOTHING, db_column='IDMDDRCompound', blank=True, null=True) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'compound'
+
+
+class Disease(models.Model):
+ idppi = models.ForeignKey('Ppi', models.DO_NOTHING, db_column='IDPPI') # Field name made lowercase.
+ disease = models.CharField(db_column='Disease', max_length=30) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'disease'
+ unique_together = (('idppi', 'disease'),)
+
+
+class DjangoMigrations(models.Model):
+ app = models.CharField(max_length=255)
+ name = models.CharField(max_length=255)
+ applied = models.DateTimeField()
+
+ class Meta:
+# managed = False
+ db_table = 'django_migrations'
+
+
+class Domain(models.Model):
+ iddomain = models.AutoField(db_column='IDDomain', primary_key=True) # Field name made lowercase.
+ pfamid = models.CharField(db_column='PfamID', max_length=20) # Field name made lowercase.
+ pfamnumaccession = models.CharField(db_column='PfamNumAccession', unique=True, max_length=10) # Field name made lowercase.
+ domaindescription = models.CharField(db_column='DomainDescription', max_length=100) # Field name made lowercase.
+ domainfamily = models.CharField(db_column='DomainFamily', max_length=25) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'domain'
+
+
+class Mddrcmpdactclass(models.Model):
+ idmddrcompound = models.ForeignKey('Mddrcompound', models.DO_NOTHING, db_column='IDMDDRCompound') # Field name made lowercase.
+ activityclass = models.CharField(db_column='ActivityClass', max_length=60) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'mDDRCmpdActClass'
+ unique_together = (('idmddrcompound', 'activityclass'),)
+
+
+class Mddrcompound(models.Model):
+ idmddrcompound = models.IntegerField(db_column='IDMDDRCompound') # Field name made lowercase.
+ mddrcmpdname = models.CharField(db_column='MDDRCmpdName', max_length=40) # Field name made lowercase.
+ phasedvpmt = models.CharField(db_column='PhaseDvpmt', max_length=20) # Field name made lowercase.
+ canonicalsmile = models.CharField(db_column='CanonicalSmile', max_length=500, blank=True, null=True) # Field name made lowercase.
+ versionmddr = models.CharField(db_column='VersionMDDR', max_length=7) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'mDDRCompound'
+ unique_together = (('idmddrcompound', 'mddrcmpdname', 'phasedvpmt'),)
+
+
+class Mddrsimilarity(models.Model):
+ idcompound = models.ForeignKey(Compound, models.DO_NOTHING, db_column='IDCompound') # Field name made lowercase.
+ idmddrcompound = models.ForeignKey(Mddrcompound, models.DO_NOTHING, db_column='IDMDDRCompound') # Field name made lowercase.
+ versionmddr = models.CharField(db_column='VersionMDDR', max_length=7) # Field name made lowercase.
+ tanimoto = models.DecimalField(db_column='Tanimoto', max_digits=6, decimal_places=5) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'mDDRSimilarity'
+ unique_together = (('idcompound', 'idmddrcompound', 'versionmddr'),)
+
+
+class Ppi(models.Model):
+ idppi = models.AutoField(db_column='IDPPI', primary_key=True) # Field name made lowercase.
+ idcomplexe1 = models.ForeignKey(Complexe, models.DO_NOTHING, db_column='IDComplexe1', related_name='cplx_id_1') # Field name made lowercase.
+ idcomplexe2 = models.ForeignKey(Complexe, models.DO_NOTHING, db_column='IDComplexe2', related_name='cplx_id_2') # Field name made lowercase.
+ idbindingsite1 = models.ForeignKey(Bindingsite, models.DO_NOTHING, db_column='IDBindingSite1', related_name='bs_id_1') # Field name made lowercase.
+ idbindingsite2 = models.ForeignKey(Bindingsite, models.DO_NOTHING, db_column='IDBindingSite2', related_name='bs_id_2') # Field name made lowercase.
+ family = models.CharField(db_column='Family', max_length=25) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'ppi'
+ unique_together = (('idcomplexe1', 'idcomplexe2', 'idbindingsite1', 'idbindingsite2'),)
+
+
+class Protein(models.Model):
+ idprotein = models.AutoField(db_column='IDProtein', primary_key=True) # Field name made lowercase.
+ numuniprot = models.CharField(db_column='NumUniprot', unique=True, max_length=10) # Field name made lowercase.
+ protnamelg = models.CharField(db_column='ProtNameLg', max_length=75) # Field name made lowercase.
+ protnamesh = models.CharField(db_column='ProtNameSh', max_length=50) # Field name made lowercase.
+ protalias = models.CharField(db_column='ProtAlias', unique=True, max_length=30) # Field name made lowercase.
+ protnamesp = models.CharField(db_column='ProtNameSp', max_length=30) # Field name made lowercase.
+ organism = models.CharField(db_column='Organism', max_length=80) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'protein'
+
+
+class Refcmpdbiblio(models.Model):
+ idcompound = models.ForeignKey(Compound, models.DO_NOTHING, db_column='IDCompound') # Field name made lowercase.
+ idbiblio = models.ForeignKey(Biblio, models.DO_NOTHING, db_column='IDBiblio') # Field name made lowercase.
+ cmpdnameinbiblio = models.CharField(db_column='CmpdNameInBiblio', max_length=20, blank=True, null=True) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'refCmpdBiblio'
+ unique_together = (('idcompound', 'idbiblio'),)
+
+
+class Refproteinfonction(models.Model):
+ idprotein = models.ForeignKey(Protein, models.DO_NOTHING, db_column='IDProtein') # Field name made lowercase.
+ protfonctionsp = models.CharField(db_column='ProtFonctionSP', max_length=200) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'refProteinFonction'
+ unique_together = (('protfonctionsp', 'idprotein'),)
+
+
+class Testactivitydescription(models.Model):
+ idtestactivity = models.AutoField(db_column='IDTestActivity', primary_key=True) # Field name made lowercase.
+ idcomplexebound = models.ForeignKey(Complexe, models.DO_NOTHING, db_column='IDComplexeBound') # Field name made lowercase.
+ idbiblio = models.ForeignKey(Biblio, models.DO_NOTHING, db_column='IDBiblio') # Field name made lowercase.
+ idppi = models.ForeignKey(Ppi, models.DO_NOTHING, db_column='IDPPI', blank=True, null=True) # Field name made lowercase.
+ testnameactivity = models.CharField(db_column='TestNameActivity', max_length=40) # Field name made lowercase.
+ isprimary = models.CharField(db_column='IsPrimary', max_length=1) # Field name made lowercase.
+ protboundconstruct = models.CharField(db_column='ProtBoundConstruct', max_length=11) # Field name made lowercase.
+ testtype = models.CharField(db_column='TestType', max_length=5) # Field name made lowercase.
+ testmodulationtype = models.CharField(db_column='TestModulationType', max_length=13) # Field name made lowercase.
+ nbactivescmpdstot = models.IntegerField(db_column='NbActivesCmpdsTot') # Field name made lowercase.
+ conccmpds = models.DecimalField(db_column='ConcCmpds', max_digits=7, decimal_places=3, blank=True, null=True) # Field name made lowercase.
+ protocol = models.TextField(db_column='Protocol', blank=True, null=True) # Field name made lowercase.
+ concproteinbound = models.DecimalField(db_column='ConcProteinBound', max_digits=7, decimal_places=3, blank=True, null=True) # Field name made lowercase.
+ concprotein2 = models.DecimalField(db_column='ConcProtein2', max_digits=7, decimal_places=3, blank=True, null=True) # Field name made lowercase.
+ controlepos = models.CharField(db_column='ControlePos', max_length=50, blank=True, null=True) # Field name made lowercase.
+ controleneg = models.CharField(db_column='ControleNeg', max_length=50, blank=True, null=True) # Field name made lowercase.
+ cellline = models.CharField(db_column='CellLine', max_length=50, blank=True, null=True) # Field name made lowercase.
+ pepseq = models.CharField(db_column='PepSeq', max_length=100, blank=True, null=True) # Field name made lowercase.
+ marker = models.CharField(db_column='Marker', max_length=35, blank=True, null=True) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'testActivityDescription'
+
+
+class Testcytotoxdescription(models.Model):
+ idtestcytotox = models.AutoField(db_column='IDTestCytotox', primary_key=True) # Field name made lowercase.
+ idbiblio = models.ForeignKey(Biblio, models.DO_NOTHING, db_column='IDBiblio') # Field name made lowercase.
+ testnamecytotox = models.CharField(db_column='TestNameCytotox', max_length=40) # Field name made lowercase.
+ cellline = models.CharField(db_column='CellLine', max_length=50) # Field name made lowercase.
+ conccmpd = models.DecimalField(db_column='ConcCmpd', max_digits=7, decimal_places=3, blank=True, null=True) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'testCytotoxDescription'
+
+
+class Testpkdescription(models.Model):
+ idtestpk = models.AutoField(db_column='IDTestPK', primary_key=True) # Field name made lowercase.
+ idbiblio = models.ForeignKey(Biblio, models.DO_NOTHING, db_column='IDBiblio') # Field name made lowercase.
+ testnamepk = models.CharField(db_column='TestNamePK', max_length=40) # Field name made lowercase.
+ animal = models.CharField(db_column='Animal', max_length=100) # Field name made lowercase.
+ administrationmode = models.CharField(db_column='AdministrationMode', max_length=2, blank=True, null=True) # Field name made lowercase.
+ concentration = models.DecimalField(db_column='Concentration', max_digits=7, decimal_places=3, blank=True, null=True) # Field name made lowercase.
+ dose = models.DecimalField(db_column='Dose', max_digits=7, decimal_places=2, blank=True, null=True) # Field name made lowercase.
+ doseinterval = models.IntegerField(db_column='DoseInterval', blank=True, null=True) # Field name made lowercase.
+
+ class Meta:
+# managed = False
+ db_table = 'testPKDescription'
+"""
diff --git a/ippisite/ippidb/templates/base.html b/ippisite/ippidb/templates/base.html
new file mode 100644
index 00000000..14a3dd00
--- /dev/null
+++ b/ippisite/ippidb/templates/base.html
@@ -0,0 +1,36 @@
+{% load bootstrap3 %}
+<!DOCTYPE html>
+<html lang="en">
+<head>
+ <link rel="stylesheet" href="{% bootstrap_css_url %}" />
+ <title>IPPI-DB Maintenance {% block title %}{% endblock %}</title>
+</head>
+
+<body>
+ <nav class="navbar navbar-default">
+ <div class="container-fluid">
+ <!-- Brand and toggle get grouped for better mobile display -->
+ <div class="navbar-header">
+ <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#bs-example-navbar-collapse-1" aria-expanded="false">
+ <span class="sr-only">Toggle navigation</span>
+ <span class="icon-bar"></span>
+ <span class="icon-bar"></span>
+ <span class="icon-bar"></span>
+ </button>
+ <a class="navbar-brand" href="#">IPPI-DB</a>
+ </div>
+
+ <!-- Collect the nav links, forms, and other content for toggling -->
+ <div class="collapse navbar-collapse" id="bs-example-navbar-collapse-1">
+ <ul class="nav navbar-nav">
+ <li class="active"><a href="/ippidb/biblio/">Bibliographic references list<span class="sr-only">(current)</span></a></li>
+ <li><a href="/ippidb/biblio/add/">Add a new bibliographic reference<span class="sr-only">(current)</span></a></li>
+ </ul>
+ </div><!-- /.navbar-collapse -->
+ </div><!-- /.container-fluid -->
+ </nav>
+ <div id="content">
+ {% block content %}{% endblock %}
+ </div>
+</body>
+</html>
diff --git a/ippisite/ippidb/templates/ippidb/bibliography_detail.html b/ippisite/ippidb/templates/ippidb/bibliography_detail.html
new file mode 100644
index 00000000..16ae53bf
--- /dev/null
+++ b/ippisite/ippidb/templates/ippidb/bibliography_detail.html
@@ -0,0 +1,19 @@
+{% extends "base.html" %}
+
+{% block title %}- biblio detail for {{object.title}} by {{object.authors_list}}{% endblock %}
+
+{% block content %}
+ <p>{{ object.get_source_display }}</p>
+ <p>{{ object.id_source}}</p>
+ <p>{{ object.title }}</p>
+ <p>{{ object.journal_name }}</p>
+ <p>{{ object.authors_list }}</p>
+ <p>{{ object.biblio_year }}</p>
+ <p>{{ object.cytotox }}</p>
+ <p>{{ object.in_silico }}</p>
+ <p>{{ object.in_vitro }}</p>
+ <p>{{ object.in_vivo }}</p>
+ <p>{{ object.in_cellulo }}</p>
+ <p>{{ object.pharmacokinetic }}</p>
+ <p>{{ object.xray }}</p>
+{% endblock %}
diff --git a/ippisite/ippidb/templates/ippidb/bibliography_form.html b/ippisite/ippidb/templates/ippidb/bibliography_form.html
new file mode 100644
index 00000000..a398e6ae
--- /dev/null
+++ b/ippisite/ippidb/templates/ippidb/bibliography_form.html
@@ -0,0 +1,10 @@
+{% extends "base.html" %}
+{% load bootstrap3 %}
+
+{% block title %}- biblio edition{% endblock %}
+
+{% block content %}
+ {% csrf_token %}
+ {% bootstrap_form form %}
+ <input type="submit" name="submit" value="Save" />
+{% endblock %}
diff --git a/ippisite/ippidb/templates/ippidb/bibliography_list.html b/ippisite/ippidb/templates/ippidb/bibliography_list.html
new file mode 100644
index 00000000..c19d5653
--- /dev/null
+++ b/ippisite/ippidb/templates/ippidb/bibliography_list.html
@@ -0,0 +1,11 @@
+{% extends "base.html" %}
+
+{% block title %}- biblios list{% endblock %}
+
+{% block content %}
+ {% for biblio in object_list %}
+ <li><a href="{{biblio.get_absolute_url}}">{{ biblio.get_source_display }} {{ biblio.id_source}} - {{ biblio.title }}</a></li>
+ {% empty %}
+ <li>No articles yet.</li>
+ {% endfor %}
+{% endblock %}
diff --git a/ippisite/ippidb/tests.py b/ippisite/ippidb/tests.py
new file mode 100644
index 00000000..7ce503c2
--- /dev/null
+++ b/ippisite/ippidb/tests.py
@@ -0,0 +1,3 @@
+from django.test import TestCase
+
+# Create your tests here.
diff --git a/ippisite/ippidb/urls.py b/ippisite/ippidb/urls.py
new file mode 100644
index 00000000..06e4b130
--- /dev/null
+++ b/ippisite/ippidb/urls.py
@@ -0,0 +1,11 @@
+from django.conf.urls import url
+
+from .views import BibliographyCreate, BibliographyUpdate, BibliographyDelete, BibliographyDetail, BibliographyList
+
+urlpatterns = [
+ url(r'biblio/$', BibliographyList.as_view(), name='list'),
+ url(r'biblio/add/$', BibliographyCreate.as_view(), name='biblio-add'),
+ url(r'biblio/(?P<pk>[0-9]+)/$', BibliographyDetail.as_view(), name='biblio-detail'),
+ url(r'biblio/(?P<pk>[0-9]+)/edit/$', BibliographyUpdate.as_view(), name='biblio-update'),
+ url(r'biblio/(?P<pk>[0-9]+)/delete/$', BibliographyDelete.as_view(), name='biblio-delete'),
+]
diff --git a/ippisite/ippidb/views.py b/ippisite/ippidb/views.py
new file mode 100644
index 00000000..83804259
--- /dev/null
+++ b/ippisite/ippidb/views.py
@@ -0,0 +1,26 @@
+from django.http import HttpResponse
+from django.views.generic.edit import CreateView, UpdateView, DeleteView
+from django.views.generic.detail import DetailView
+from django.views.generic import ListView
+from django.urls import reverse_lazy
+from .models import Bibliography
+
+class BibliographyCreate(CreateView):
+ model = Bibliography
+ fields = '__all__'
+
+class BibliographyUpdate(UpdateView):
+ model = Bibliography
+ fields = '__all__'
+
+class BibliographyDelete(DeleteView):
+ model = Bibliography
+ success_url = reverse_lazy('biblio-list')
+
+class BibliographyDetail(DetailView):
+ model = Bibliography
+ fields = '__all__'
+
+class BibliographyList(ListView):
+ model = Bibliography
+
diff --git a/ippisite/ippidb/ws.py b/ippisite/ippidb/ws.py
new file mode 100644
index 00000000..cc4807da
--- /dev/null
+++ b/ippisite/ippidb/ws.py
@@ -0,0 +1,15 @@
+from bioservices.eutils import EUtils
+
+def get_pubmed_info(pmid):
+ eu = EUtils()
+ r = eu.EFetch('pubmed', pmid, retmode='dict', rettype='abstract')
+ article = r['PubmedArticleSet']['PubmedArticle']['MedlineCitation']['Article']
+ title = article['ArticleTitle']
+ authors_list = [a['LastName']+ ' ' + a['Initials'] for a in article['AuthorList']['Author']]
+ authors = ', '.join(authors_list)
+ journal_name = article['Journal']['Title']
+ biblio_year = article['Journal']['JournalIssue']['PubDate']['Year']
+ return {'title':title,
+ 'journal_name':journal_name,
+ 'biblio_year':biblio_year,
+ 'authors_list': authors}
diff --git a/ippisite/ippisite/__init__.py b/ippisite/ippisite/__init__.py
new file mode 100644
index 00000000..e69de29b
diff --git a/ippisite/ippisite/settings.py b/ippisite/ippisite/settings.py
new file mode 100644
index 00000000..b7cf2bc6
--- /dev/null
+++ b/ippisite/ippisite/settings.py
@@ -0,0 +1,122 @@
+"""
+Django settings for ippisite project.
+
+Generated by 'django-admin startproject' using Django 1.10.5.
+
+For more information on this file, see
+https://docs.djangoproject.com/en/1.10/topics/settings/
+
+For the full list of settings and their values, see
+https://docs.djangoproject.com/en/1.10/ref/settings/
+"""
+
+import os
+
+# Build paths inside the project like this: os.path.join(BASE_DIR, ...)
+BASE_DIR = os.path.dirname(os.path.dirname(os.path.abspath(__file__)))
+
+
+# Quick-start development settings - unsuitable for production
+# See https://docs.djangoproject.com/en/1.10/howto/deployment/checklist/
+
+# SECURITY WARNING: keep the secret key used in production secret!
+SECRET_KEY = '&qc$2x5p&!qwvu2r=)sjp*jgg8a7ss97g8lwpennmu(q9ty4o$'
+
+# SECURITY WARNING: don't run with debug turned on in production!
+DEBUG = True
+
+ALLOWED_HOSTS = []
+
+
+# Application definition
+
+INSTALLED_APPS = [
+ 'django.contrib.admin',
+ 'django.contrib.auth',
+ 'django.contrib.contenttypes',
+ 'django.contrib.sessions',
+ 'django.contrib.messages',
+ 'django.contrib.staticfiles',
+ 'bootstrap3',
+ 'ippidb'
+]
+
+MIDDLEWARE = [
+ 'django.middleware.security.SecurityMiddleware',
+ 'django.contrib.sessions.middleware.SessionMiddleware',
+ 'django.middleware.common.CommonMiddleware',
+ 'django.middleware.csrf.CsrfViewMiddleware',
+ 'django.contrib.auth.middleware.AuthenticationMiddleware',
+ 'django.contrib.messages.middleware.MessageMiddleware',
+ 'django.middleware.clickjacking.XFrameOptionsMiddleware',
+]
+
+ROOT_URLCONF = 'ippisite.urls'
+
+TEMPLATES = [
+ {
+ 'BACKEND': 'django.template.backends.django.DjangoTemplates',
+ 'DIRS': [],
+ 'APP_DIRS': True,
+ 'OPTIONS': {
+ 'context_processors': [
+ 'django.template.context_processors.debug',
+ 'django.template.context_processors.request',
+ 'django.contrib.auth.context_processors.auth',
+ 'django.contrib.messages.context_processors.messages',
+ ],
+ },
+ },
+]
+
+WSGI_APPLICATION = 'ippisite.wsgi.application'
+
+
+# Database
+# https://docs.djangoproject.com/en/1.10/ref/settings/#databases
+
+DATABASES = {
+ 'default': {
+ 'ENGINE': 'django.db.backends.sqlite3',
+ 'NAME': os.path.join(BASE_DIR, 'db.sqlite3'),
+ }
+}
+
+
+# Password validation
+# https://docs.djangoproject.com/en/1.10/ref/settings/#auth-password-validators
+
+AUTH_PASSWORD_VALIDATORS = [
+ {
+ 'NAME': 'django.contrib.auth.password_validation.UserAttributeSimilarityValidator',
+ },
+ {
+ 'NAME': 'django.contrib.auth.password_validation.MinimumLengthValidator',
+ },
+ {
+ 'NAME': 'django.contrib.auth.password_validation.CommonPasswordValidator',
+ },
+ {
+ 'NAME': 'django.contrib.auth.password_validation.NumericPasswordValidator',
+ },
+]
+
+
+# Internationalization
+# https://docs.djangoproject.com/en/1.10/topics/i18n/
+
+LANGUAGE_CODE = 'en-us'
+
+TIME_ZONE = 'UTC'
+
+USE_I18N = True
+
+USE_L10N = True
+
+USE_TZ = True
+
+
+# Static files (CSS, JavaScript, Images)
+# https://docs.djangoproject.com/en/1.10/howto/static-files/
+
+STATIC_URL = '/static/'
diff --git a/ippisite/ippisite/urls.py b/ippisite/ippisite/urls.py
new file mode 100644
index 00000000..1cacf0ad
--- /dev/null
+++ b/ippisite/ippisite/urls.py
@@ -0,0 +1,22 @@
+"""ippisite URL Configuration
+
+The `urlpatterns` list routes URLs to views. For more information please see:
+ https://docs.djangoproject.com/en/1.10/topics/http/urls/
+Examples:
+Function views
+ 1. Add an import: from my_app import views
+ 2. Add a URL to urlpatterns: url(r'^$', views.home, name='home')
+Class-based views
+ 1. Add an import: from other_app.views import Home
+ 2. Add a URL to urlpatterns: url(r'^$', Home.as_view(), name='home')
+Including another URLconf
+ 1. Import the include() function: from django.conf.urls import url, include
+ 2. Add a URL to urlpatterns: url(r'^blog/', include('blog.urls'))
+"""
+from django.conf.urls import include, url
+from django.contrib import admin
+
+urlpatterns = [
+ url(r'^', include('ippidb.urls')),
+ url(r'^admin/', admin.site.urls),
+]
diff --git a/ippisite/ippisite/wsgi.py b/ippisite/ippisite/wsgi.py
new file mode 100644
index 00000000..125cc998
--- /dev/null
+++ b/ippisite/ippisite/wsgi.py
@@ -0,0 +1,16 @@
+"""
+WSGI config for ippisite project.
+
+It exposes the WSGI callable as a module-level variable named ``application``.
+
+For more information on this file, see
+https://docs.djangoproject.com/en/1.10/howto/deployment/wsgi/
+"""
+
+import os
+
+from django.core.wsgi import get_wsgi_application
+
+os.environ.setdefault("DJANGO_SETTINGS_MODULE", "ippisite.settings")
+
+application = get_wsgi_application()
diff --git a/ippisite/manage.py b/ippisite/manage.py
new file mode 100755
index 00000000..cbc3b8b3
--- /dev/null
+++ b/ippisite/manage.py
@@ -0,0 +1,22 @@
+#!/usr/bin/env python
+import os
+import sys
+
+if __name__ == "__main__":
+ os.environ.setdefault("DJANGO_SETTINGS_MODULE", "ippisite.settings")
+ try:
+ from django.core.management import execute_from_command_line
+ except ImportError:
+ # The above import may fail for some other reason. Ensure that the
+ # issue is really that Django is missing to avoid masking other
+ # exceptions on Python 2.
+ try:
+ import django
+ except ImportError:
+ raise ImportError(
+ "Couldn't import Django. Are you sure it's installed and "
+ "available on your PYTHONPATH environment variable? Did you "
+ "forget to activate a virtual environment?"
+ )
+ raise
+ execute_from_command_line(sys.argv)
--
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