From 28daf7692426f0dbf6b88e631cdccc4c27ea4e73 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Herv=C3=A9=20=20MENAGER?= <herve.menager@pasteur.fr>
Date: Fri, 16 Jun 2017 10:25:16 +0200
Subject: [PATCH] add code to retrieve proteins information from PDB
Former-commit-id: 9a7b9355ed06b75a23904ec12e070237b5f477f1
---
ippisite/ippidb/views.py | 16 ++++++++++++++++
1 file changed, 16 insertions(+)
diff --git a/ippisite/ippidb/views.py b/ippisite/ippidb/views.py
index e4b4b049..d3c6bfb0 100644
--- a/ippisite/ippidb/views.py
+++ b/ippisite/ippidb/views.py
@@ -2,7 +2,10 @@ import ippidb
from django.shortcuts import render
from django.http import HttpResponseRedirect
from formtools.wizard.views import SessionWizardView,NamedUrlSessionWizardView
+
from .forms import IdForm, BibliographyForm, PDBForm, ProteinForm, ProteinDomainComplexTypeForm, ProteinDomainComplexForm, PpiForm
+from .models import Protein
+from .ws import get_pdb_uniprot_mapping
def index(request):
return render(request, 'index.html')
@@ -48,6 +51,19 @@ class IppiWizard(SessionWizardView):
if self.steps.current=='IdForm':
form.instance.autofill()
self.instance_dict['BibliographyForm'] = form.instance
+ elif self.steps.current=='PDBForm':
+ uniprot_ids = get_pdb_uniprot_mapping(form.cleaned_data['pdb_id'])
+ proteins = []
+ for uniprot_id in uniprot_ids:
+ try:
+ p = Protein.objects.get(uniprot_id=uniprot_id)
+ except Protein.DoesNotExist:
+ p = Protein()
+ p.uniprot_id = uniprot_ids[0]
+ p.autofill()
+ proteins.append(p)
+ #TODO replace p with proteins as the instance_dict
+ self.instance_dict['ProteinForm'] = p
return self.get_form_step_data(form)
def done(self, form_list, **kwargs):
--
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