From 2e8935e4f254a1acbab2790e243f31e41b29639a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Herv=C3=A9=20=20MENAGER?= <herve.menager@pasteur.fr>
Date: Wed, 2 May 2018 18:03:59 +0200
Subject: [PATCH] enable listing and displaying PPI families for a compound
Former-commit-id: 8e38acc04f6bb2e703791158b930ee6699e18fec
---
ippisite/ippidb/models.py | 7 +++++++
ippisite/ippidb/templates/compound_v_item.html | 2 +-
2 files changed, 8 insertions(+), 1 deletion(-)
diff --git a/ippisite/ippidb/models.py b/ippisite/ippidb/models.py
index 2ec0acd0..1838e18f 100644
--- a/ippisite/ippidb/models.py
+++ b/ippisite/ippidb/models.py
@@ -471,6 +471,13 @@ class Compound(models.Model):
"""
return self.compoundactivityresult_set.all().filter(test_activity_description__test_type='CELL').count()
+ @property
+ def families(self):
+ """
+ return the all PPI families for PPIs involved in the compound activity of the compound
+ """
+ return list(set([ca.ppi.family for ca in self.compoundaction_set.all()]))
+
class LeLleBiplotData(models.Model):
le_lle_biplot_data = models.CharField('LE-LLE biplot JSON data', max_length=150000, blank=True, null=True)
diff --git a/ippisite/ippidb/templates/compound_v_item.html b/ippisite/ippidb/templates/compound_v_item.html
index e6e54ecd..5beb76ad 100644
--- a/ippisite/ippidb/templates/compound_v_item.html
+++ b/ippisite/ippidb/templates/compound_v_item.html
@@ -2,7 +2,7 @@
<a href="/compound/{{ compound.id }}">{% include "pubchem_img.html" %}</a>
<div class="card-body" style="overflow:hidden; word-wrap:break-word;">
<span class="badge badge-dark"><a href="/compound/{{ compound.id }}">{{ compound.id }}</a></span>
- <p>{% for pfam_id in compound.pfam_ids %}{{ pfam_id }}{% endfor %}</p>
+ <p>{% for family in compound.families %}{{ family.name }}{% endfor %}</p>
<p>Molecular Weight: {{ compound.molecular_weight }} g/mol</p>
</div>
</div>
--
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