diff --git a/ippisite/ippidb/tests/test_activity_computation_and_storage_pIC50_2380_002_e-9.yaml b/ippisite/ippidb/tests/test_activity_computation_and_storage_pIC50_2380_002_e-9.yaml index d23e8c9a7d11e94ced63753499e8129ef5fbcad1..e9b4af6c917854eadc83f64b1b47011fff9a9cd1 100644 --- a/ippisite/ippidb/tests/test_activity_computation_and_storage_pIC50_2380_002_e-9.yaml +++ b/ippisite/ippidb/tests/test_activity_computation_and_storage_pIC50_2380_002_e-9.yaml @@ -35,6 +35,7 @@ diseases: - ;titi;sfddf; - ;tata;3232; family_name: Menin (PF05053) +symmetry: AS id_source: '15072770' in_silico: true pdb_id: 3u85 diff --git a/ippisite/ippidb/tests/test_activity_computation_and_storage_pIC50_4_9846073_e-6.yaml b/ippisite/ippidb/tests/test_activity_computation_and_storage_pIC50_4_9846073_e-6.yaml index 963453ff916c5671abe90aa1a69dc0f6e5c655ab..1816cf3c497366c2da859d9693b1e37a1fc82125 100644 --- a/ippisite/ippidb/tests/test_activity_computation_and_storage_pIC50_4_9846073_e-6.yaml +++ b/ippisite/ippidb/tests/test_activity_computation_and_storage_pIC50_4_9846073_e-6.yaml @@ -35,6 +35,7 @@ diseases: - ;titi;sfddf; - ;tata;3232; family_name: Menin (PF05053) +symmetry: AS id_source: '15072770' in_silico: true pdb_id: 3u85 diff --git a/ippisite/ippidb/tests/test_activity_computation_and_storage_pIC50_639_39406_e-3.yaml b/ippisite/ippidb/tests/test_activity_computation_and_storage_pIC50_639_39406_e-3.yaml index 8dd666a74fe8f9106e69b46166e717156c4bca40..b4a2fa449f7f257dcbf21adf78b3ca8a59fbd804 100644 --- a/ippisite/ippidb/tests/test_activity_computation_and_storage_pIC50_639_39406_e-3.yaml +++ b/ippisite/ippidb/tests/test_activity_computation_and_storage_pIC50_639_39406_e-3.yaml @@ -35,6 +35,7 @@ diseases: - ;titi;sfddf; - ;tata;3232; family_name: Menin (PF05053) +symmetry: AS id_source: '15072770' in_silico: true pdb_id: 3u85 diff --git a/ippisite/ippidb/tests/test_activity_computation_and_storage_pIC50_6_85_e-0.yaml b/ippisite/ippidb/tests/test_activity_computation_and_storage_pIC50_6_85_e-0.yaml index a11ee0b690e376ef4253a0d0571575582f3fed1f..78e71ba7363df4a701b2ce4d19d3dfd67117db14 100644 --- a/ippisite/ippidb/tests/test_activity_computation_and_storage_pIC50_6_85_e-0.yaml +++ b/ippisite/ippidb/tests/test_activity_computation_and_storage_pIC50_6_85_e-0.yaml @@ -35,6 +35,7 @@ diseases: - ;titi;sfddf; - ;tata;3232; family_name: Menin (PF05053) +symmetry: AS id_source: '15072770' in_silico: true pdb_id: 3u85 diff --git a/ippisite/ippidb/tests/test_basic_entry.yaml b/ippisite/ippidb/tests/test_basic_entry.yaml index af3ac0d2a90e95ef8d83cf1c348a2d3f0946af0c..c2d2b159b1cb6cadc272d0ad6a1ae828620fa143 100644 --- a/ippisite/ippidb/tests/test_basic_entry.yaml +++ b/ippisite/ippidb/tests/test_basic_entry.yaml @@ -35,6 +35,7 @@ diseases: - ;titi;sfddf; - ;tata;3232; family_name: Menin (PF05053) +symmetry: AS id_source: '15072770' in_silico: true pdb_id: 3u85 diff --git a/ippisite/ippidb/tests/test_complex_no_pfam.yaml b/ippisite/ippidb/tests/test_complex_no_pfam.yaml index 9ff962bf4fae400a8dc91f2f37d0ddff0233227c..325f7a7cc94b9de4e326530ff3348f78e0048251 100644 --- a/ippisite/ippidb/tests/test_complex_no_pfam.yaml +++ b/ippisite/ippidb/tests/test_complex_no_pfam.yaml @@ -32,6 +32,7 @@ compounds: molecule_smiles: C diseases: [] family_name: WD40 (PF00400) +symmetry: AS id_source: '26958703' in_silico: true pdb_id: 3emh diff --git a/ippisite/ippidb/tests/test_entry_28.yaml b/ippisite/ippidb/tests/test_entry_28.yaml index 5923d9523d70ffdda832aea5ce80f94c55319a23..1ecc6012bf6b638ba6f3df02f495b80390493e74 100644 --- a/ippisite/ippidb/tests/test_entry_28.yaml +++ b/ippisite/ippidb/tests/test_entry_28.yaml @@ -33,6 +33,7 @@ compounds: diseases: - ;cancer;MONDO:0004992; family_name: KEAP1 / NRF2 +symmetry: AS id_source: '24512214 ' in_vitro: true pdb_id: 3wn7 diff --git a/ippisite/ippidb/tests/test_simple_heterodimer.yaml b/ippisite/ippidb/tests/test_simple_heterodimer.yaml index 31762772d1822d48aba3bb24f3cbd84864c7dd24..a866a7c2bebb560ee44921472f3e7f704d1dc167 100644 --- a/ippisite/ippidb/tests/test_simple_heterodimer.yaml +++ b/ippisite/ippidb/tests/test_simple_heterodimer.yaml @@ -41,6 +41,7 @@ compounds: molecule_smiles: C1CCC1 diseases: [] family_name: WD40 (PF00400) +symmetry: AS id_source: '26958703' in_silico: true in_vitro: true diff --git a/ippisite/ippidb/tests/test_simple_heterodimer_208.yaml b/ippisite/ippidb/tests/test_simple_heterodimer_208.yaml index 84608560d331b79483534668f836e6005f4c987f..946cda2acb84266f38764a70094ffeccb668ae77 100644 --- a/ippisite/ippidb/tests/test_simple_heterodimer_208.yaml +++ b/ippisite/ippidb/tests/test_simple_heterodimer_208.yaml @@ -20,6 +20,7 @@ complex: ppp_copy_nb_per_p: 1 uniprot_id: Q07817 family_name: BCL-XL / Bad +symmetry: AS diseases: - ;cancer;MONDO:0004992; compounds: diff --git a/ippisite/ippidb/tests/test_simple_stabilized_heterodimer.yaml b/ippisite/ippidb/tests/test_simple_stabilized_heterodimer.yaml index 3dc5abcd9777d0071b571fc4513c95b311e41a4b..c17c7ecc4ee2a10fd73ae9343a5b6a808502f765 100644 --- a/ippisite/ippidb/tests/test_simple_stabilized_heterodimer.yaml +++ b/ippisite/ippidb/tests/test_simple_stabilized_heterodimer.yaml @@ -34,6 +34,7 @@ compounds: diseases: - ;breast cancer;MONDO:0007254; family_name: 14-3-3 / ER +symmetry: AS id_source: '23676274' in_cellulo: true in_vitro: true diff --git a/ippisite/ippidb/tests/test_stabilizer_204.yaml b/ippisite/ippidb/tests/test_stabilizer_204.yaml index 32e3ded658e247ef496275ba8f0e5a63f38f1854..3f9acbf71ade1a40d5cf30ce25f36d01824dc263 100644 --- a/ippisite/ippidb/tests/test_stabilizer_204.yaml +++ b/ippisite/ippidb/tests/test_stabilizer_204.yaml @@ -19,6 +19,7 @@ complex: ppp_copy_nb_per_p: 1 uniprot_id: P04049 family_name: 14-3-3 / C-RAF +symmetry: AS diseases: - ;melanoma;(MONDO_0005105); compounds: diff --git a/ippisite/ippidb/tests/test_with_all_tests.yaml b/ippisite/ippidb/tests/test_with_all_tests.yaml index 73f7d142669596f3dbaa32968616253a733a9cc2..1892c39f18464572c31f3890d95e9a4388f9aba3 100644 --- a/ippisite/ippidb/tests/test_with_all_tests.yaml +++ b/ippisite/ippidb/tests/test_with_all_tests.yaml @@ -45,6 +45,7 @@ diseases: - ;tutu;5456456; - '' family_name: Menin (PF05053) +symmetry: AS id_source: '15072770' in_silico: true pdb_id: 3u85 diff --git a/ippisite/ippidb/tests/test_with_pk_test.yaml b/ippisite/ippidb/tests/test_with_pk_test.yaml index 60136f0575032511a6bf534735ce72bb99f60af6..cb852f220e3fa6b7cdd24b4a6406114044427405 100644 --- a/ippisite/ippidb/tests/test_with_pk_test.yaml +++ b/ippisite/ippidb/tests/test_with_pk_test.yaml @@ -37,6 +37,7 @@ diseases: - ;tutu;5456456; - '' family_name: Menin (PF05053) +symmetry: AS id_source: '15072770' pdb_id: 3u85 pharmacokinetic: true diff --git a/ippisite/ippidb/tests/tests_contribute_e2e.py b/ippisite/ippidb/tests/tests_contribute_e2e.py index a0408d48aacb9ff61e654f7328a27ffa40e1a9eb..1478378504012790b88069c131092f837805a0a0 100644 --- a/ippisite/ippidb/tests/tests_contribute_e2e.py +++ b/ippisite/ippidb/tests/tests_contribute_e2e.py @@ -325,11 +325,15 @@ class ContributionE2ETestCase(TestCase): return data def get_ppi_form(): + if "symmetry" in entry_data: + symmetry_id = models.Symmetry.objects.get( + code=entry_data["symmetry"] + ).id return { "family": "", "pdb_id": entry_data["pdb_id"], "family_name": entry_data["family_name"], - "symmetry": 1, # FIXME + "symmetry": symmetry_id, # FIXME "pockets_nb": 1, # FIXME "selected_diseases": "\n".join(entry_data["diseases"]), }