diff --git a/README.md b/README.md index cb870e2ef862d171a8c23074d9d7f0355cf88b10..731f6a2f79038b7eb40ea593d0cb1c43df05b4ef 100644 --- a/README.md +++ b/README.md @@ -1,32 +1,4 @@ -# iPPI-DB project repository +# ippidb-web -Refactoring and update of iPPIDB database - -### Description of the repository: - -- **ansible** - - ansible recipes to deploy ippidb web site automatically -- **ichem_module** - - module for IChem private tool. - INFO: to use IChem on TARS: - `#module load /pasteur/projets/policy01/IPPI-DB/sources/iPPIDB/ichem_module/5.2.8` -- **ippidb_backend** - - java codes a bit optimized and refactored by Hélenes Borges (a full refactoring is not mandatory but needed (can be done later) - (brainstorming and documentation available at https://docs.google.com/presentation/d/1-HZZiRmEtipNkKLxKpmAhNHmuBbsjCQ7jmcTdgmf88g/edit?usp=sharing) -- **ippidb_binaries** - - binaries used for the ippidb website backend calculations - - the galaxy subdirectory contains Galaxy XML for galaxy-dev.web.pasteur.fr instance - - the lib_lib subdirectory contains the jar dependancies for the Java Chemaxon based program (sources are in ippidb_backend dir) -- **ippidb_files** - - files mandatory for the binaries execution: - - the Chemaxon licenses (update here and with the same name of the license is updated in 2018) -- **ippidb_module** - - module for Chemaxon based private tools. - INFO: to use Chemaxon tools on TARS: - `#module load /pasteur/projets/policy01/IPPI-DB/sources/iPPIDB/ippidb_module/0.1` -- **ippidb_targetbased_binaries** - - python scripts for the tarbased based ippidb approach - - galaxy directory with the XMLs for the python scripts + gromacs protonation tools + IChem Volsite XML (not fonctional yet) -- **ippisite** (HM, and RT don't hesitate to fill this description) - - django web interface for ippidb - - front-end web interface +This repository contains the django web application that manages the iPPI-DB +database. \ No newline at end of file