diff --git a/ippisite/db.sqlite3 b/ippisite/db.sqlite3
index 7f26c319de03013d8a2ee4fd4574e563dd1dd02c..46aaf4b6776a9bf725d217f85d4bf10ccacee955 100644
Binary files a/ippisite/db.sqlite3 and b/ippisite/db.sqlite3 differ
diff --git a/ippisite/ippidb/migrations/0005_auto_20170327_1301.py b/ippisite/ippidb/migrations/0005_auto_20170327_1301.py
new file mode 100644
index 0000000000000000000000000000000000000000..0bab3b535d81083f6efd704bbcbcadc8c59fd0bd
--- /dev/null
+++ b/ippisite/ippidb/migrations/0005_auto_20170327_1301.py
@@ -0,0 +1,54 @@
+# -*- coding: utf-8 -*-
+# Generated by Django 1.10.5 on 2017-03-27 13:01
+from __future__ import unicode_literals
+
+from django.db import migrations, models
+import django.db.models.deletion
+
+
+class Migration(migrations.Migration):
+
+ dependencies = [
+ ('ippidb', '0004_auto_20170314_1449'),
+ ]
+
+ operations = [
+ migrations.CreateModel(
+ name='CellLine',
+ fields=[
+ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+ ('name', models.CharField(max_length=50, unique=True, verbose_name='Name')),
+ ],
+ ),
+ migrations.CreateModel(
+ name='TestActivityDescription',
+ fields=[
+ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+ ('test_name', models.CharField(max_length=100, verbose_name='Test name')),
+ ('test_type', models.CharField(choices=[('BIOCH', 'Biochemical assay'), ('CELL', 'Cellular assay')], max_length=5, verbose_name='Test type')),
+ ('test_modulation_type', models.CharField(choices=[('B', 'Binding'), ('I', 'Inhibition'), ('S', 'Stabilization')], max_length=1, verbose_name='Test modulation type')),
+ ('nb_active_compounds', models.IntegerField(verbose_name='Total number of active compounds')),
+ ('biblio_id', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.Bibliography')),
+ ('cell_line', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.CellLine')),
+ ('complex_id', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.ProteinDomainBoundComplex')),
+ ('ppi_id', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='ippidb.Ppi')),
+ ],
+ ),
+ migrations.AlterModelOptions(
+ name='mddrcompoundactivityclass',
+ options={'verbose_name_plural': 'MDDR compound activity classes'},
+ ),
+ migrations.AlterModelOptions(
+ name='mddrcompoundimport',
+ options={'verbose_name_plural': 'MDDR compound imports'},
+ ),
+ migrations.AlterModelOptions(
+ name='mddrsimilarity',
+ options={'verbose_name_plural': 'MDDR similarities'},
+ ),
+ migrations.AlterField(
+ model_name='taxonomy',
+ name='taxonomy_id',
+ field=models.DecimalField(decimal_places=0, max_digits=9, unique=True, verbose_name='NCBI TaxID'),
+ ),
+ ]
diff --git a/ippisite/ippidb/migrations/0006_auto_20170327_1439.py b/ippisite/ippidb/migrations/0006_auto_20170327_1439.py
new file mode 100644
index 0000000000000000000000000000000000000000..aaa0b9924e3fecdc779997b693fa56e0eb7dc7f4
--- /dev/null
+++ b/ippisite/ippidb/migrations/0006_auto_20170327_1439.py
@@ -0,0 +1,117 @@
+# -*- coding: utf-8 -*-
+# Generated by Django 1.10.5 on 2017-03-27 14:39
+from __future__ import unicode_literals
+
+from django.db import migrations, models
+import django.db.models.deletion
+
+
+class Migration(migrations.Migration):
+
+ dependencies = [
+ ('ippidb', '0005_auto_20170327_1301'),
+ ]
+
+ operations = [
+ migrations.CreateModel(
+ name='ActivityType',
+ fields=[
+ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+ ('name', models.CharField(max_length=50, unique=True, verbose_name='Name')),
+ ],
+ ),
+ migrations.CreateModel(
+ name='AdministrationMode',
+ fields=[
+ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+ ('name', models.CharField(blank=True, max_length=20, null=True, verbose_name='Administration mode')),
+ ],
+ ),
+ migrations.CreateModel(
+ name='CmpdAction',
+ fields=[
+ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+ ('activation_mode', models.CharField(choices=[('O', 'Orthosteric'), ('A', 'Allosteric'), ('U', 'Unspecified')], max_length=1, verbose_name='Activation mode')),
+ ('modulation_type', models.CharField(choices=[('I', 'Inhibition'), ('S', 'Stabilization')], max_length=1, verbose_name='Modulation type')),
+ ('complex_id', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.ProteinDomainBoundComplex')),
+ ('compound_id', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.Compound')),
+ ],
+ ),
+ migrations.CreateModel(
+ name='CompoundActivityResult',
+ fields=[
+ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+ ('activity', models.DecimalField(decimal_places=10, max_digits=12, verbose_name='Activity')),
+ ('activity_type_id', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.ActivityType')),
+ ('compound_id', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.Compound')),
+ ('test_activity_description_id', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.TestActivityDescription')),
+ ],
+ ),
+ migrations.CreateModel(
+ name='CompoundCytotoxicityResult',
+ fields=[
+ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+ ('toxicity', models.BooleanField(default=False, verbose_name='Toxicity')),
+ ('compound_id', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.Compound')),
+ ],
+ ),
+ migrations.CreateModel(
+ name='CompoundPKResult',
+ fields=[
+ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+ ('tolerated', models.NullBooleanField(verbose_name='Tolerated')),
+ ('auc', models.IntegerField(blank=True, null=True, verbose_name='Area under curve (ng.mL-1.hr)')),
+ ('clearance', models.DecimalField(blank=True, decimal_places=3, max_digits=7, null=True, verbose_name='Clearance (mL/hr)')),
+ ('cmax', models.DecimalField(blank=True, decimal_places=3, max_digits=7, null=True, verbose_name='Maximal concentration (ng/mL)')),
+ ('oral_bioavailability', models.IntegerField(blank=True, null=True, verbose_name='Oral Bioavailability (%F)')),
+ ('t_demi', models.IntegerField(blank=True, null=True, verbose_name='t½')),
+ ('t_max', models.IntegerField(blank=True, null=True, verbose_name='tmax')),
+ ('voldistribution', models.DecimalField(blank=True, decimal_places=2, max_digits=5, null=True, verbose_name='Volume distribution (Vd)')),
+ ('compound_id', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.Compound')),
+ ],
+ ),
+ migrations.CreateModel(
+ name='TestCytotoxDescription',
+ fields=[
+ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+ ('test_name', models.CharField(max_length=100, verbose_name='Cytotoxicity test name')),
+ ('compound_concentration', models.DecimalField(blank=True, decimal_places=3, max_digits=7, null=True, verbose_name='Compound concentration in μM')),
+ ('biblio_id', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.Bibliography')),
+ ('cell_line', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.CellLine')),
+ ],
+ ),
+ migrations.CreateModel(
+ name='TestPKDescription',
+ fields=[
+ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
+ ('test_name', models.CharField(max_length=100, verbose_name='Pharmacokinetic test name')),
+ ('dose', models.DecimalField(blank=True, decimal_places=4, max_digits=7, null=True, verbose_name='Dose in mg/kg')),
+ ('dose_interval', models.IntegerField(blank=True, null=True, verbose_name='Dose interval, in hours')),
+ ('administration_mode', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='ippidb.AdministrationMode')),
+ ('biblio_id', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.Bibliography')),
+ ('organism', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.Taxonomy')),
+ ],
+ ),
+ migrations.AddField(
+ model_name='compoundpkresult',
+ name='test_pk_description_id',
+ field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.TestPKDescription'),
+ ),
+ migrations.AddField(
+ model_name='compoundcytotoxicityresult',
+ name='test_cytotoxicity_description_id',
+ field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='ippidb.TestCytotoxDescription'),
+ ),
+ migrations.AlterUniqueTogether(
+ name='compoundpkresult',
+ unique_together=set([('compound_id', 'test_pk_description_id')]),
+ ),
+ migrations.AlterUniqueTogether(
+ name='compoundcytotoxicityresult',
+ unique_together=set([('compound_id', 'test_cytotoxicity_description_id')]),
+ ),
+ migrations.AlterUniqueTogether(
+ name='compoundactivityresult',
+ unique_together=set([('compound_id', 'test_activity_description_id', 'activity_type_id')]),
+ ),
+ ]
diff --git a/ippisite/ippidb/models.py b/ippisite/ippidb/models.py
index 5a5abf1b4c152854216596067dd03ed8bf5989b1..4ce93714c4252e463804ef049342e5a135f2f92d 100644
--- a/ippisite/ippidb/models.py
+++ b/ippisite/ippidb/models.py
@@ -245,187 +245,111 @@ class MDDRSimilarity(models.Model):
unique_together = (('canonical_smile_ippidb', 'canonical_smile_mddr'),)
verbose_name_plural = "MDDR similarities"
-"""
-class TestActivityDescription(models.Model):
- complex_id = models.ForeignKey(Complex)
- biblio_id = models.ForeignKey(Biblio)
- idppi = models.ForeignKey(Ppi, models.DO_NOTHING, ='IDPPI', blank=True, null=True)
- testnameactivity = models.CharField(='TestNameActivity', max_length=40)
- isprimary = models.CharField(='IsPrimary', max_length=1)
- protboundconstruct = models.CharField(='ProtBoundConstruct', max_length=11)
- testtype = models.CharField(='TestType', max_length=5)
- testmodulationtype = models.CharField(='TestModulationType', max_length=13)
- nbactivescmpdstot = models.IntegerField(='NbActivesCmpdsTot')
- conccmpds = models.DecimalField(='ConcCmpds', max_digits=7, decimal_places=3, blank=True, null=True)
- protocol = models.TextField(='Protocol', blank=True, null=True)
- concproteinbound = models.DecimalField(='ConcProteinBound', max_digits=7, decimal_places=3, blank=True, null=True)
- concprotein2 = models.DecimalField(='ConcProtein2', max_digits=7, decimal_places=3, blank=True, null=True)
- controlepos = models.CharField(='ControlePos', max_length=50, blank=True, null=True)
- controleneg = models.CharField(='ControleNeg', max_length=50, blank=True, null=True)
- cellline = models.CharField(='CellLine', max_length=50, blank=True, null=True)
- pepseq = models.CharField(='PepSeq', max_length=100, blank=True, null=True)
- marker = models.CharField(='Marker', max_length=35, blank=True, null=True)
-
-
-
-
-
-
-class Actionevidencetest(models.Model):
- idcmpdaction = models.ForeignKey('Cmpdaction', models.DO_NOTHING, ='IDCmpdAction')
- idtestactivity = models.ForeignKey('Testactivitydescription', models.DO_NOTHING, ='IDTestActivity')
- nbcopycompound = models.IntegerField(='NbCopyCompound', blank=True, null=True)
+class CellLine(models.Model):
+ name = models.CharField('Name', max_length=50, unique=True)
- class Meta:
-# managed = False
- db_table = 'actionEvidenceTest'
- unique_together = (('idcmpdaction', 'idtestactivity'),)
-
-
-class Actionevidencexray(models.Model):
- idcmpdaction = models.ForeignKey('Cmpdaction', models.DO_NOTHING, ='IDCmpdAction')
- codepdb = models.CharField(='CodePDB', max_length=4)
- nbcopycompound = models.IntegerField(='NbCopyCompound')
- idbindingsite = models.ForeignKey('Bindingsite', models.DO_NOTHING, ='IDBindingSite')
- idbiblio = models.ForeignKey('Biblio', models.DO_NOTHING, ='IDBiblio', blank=True, null=True)
+class TestActivityDescription(models.Model):
+ TEST_TYPES = (
+ ('BIOCH', 'Biochemical assay'),
+ ('CELL', 'Cellular assay')
+ )
+ TEST_MODULATION_TYPES = (
+ ('B', 'Binding'),
+ ('I', 'Inhibition'),
+ ('S', 'Stabilization')
+ )
+ complex_id = models.ForeignKey(ProteinDomainBoundComplex)
+ biblio_id = models.ForeignKey(Bibliography)
+ ppi_id = models.ForeignKey(Ppi, blank=True, null=True)
+ test_name = models.CharField('Test name', max_length=100)
+ test_type = models.CharField('Test type', max_length=5, choices=TEST_TYPES)
+ test_modulation_type = models.CharField('Test modulation type', max_length=1, choices=TEST_MODULATION_TYPES)
+ nb_active_compounds = models.IntegerField('Total number of active compounds')
+ cell_line = models.ForeignKey(CellLine)
+
+class ActivityType(models.Model):
+ name = models.CharField('Name', max_length=50, unique=True)
+
+class CompoundActivityResult(models.Model):
+ compound_id = models.ForeignKey(Compound)
+ test_activity_description_id = models.ForeignKey(TestActivityDescription)
+ activity_type_id = models.ForeignKey(ActivityType)
+ activity = models.DecimalField('Activity', max_digits=12, decimal_places=10)
class Meta:
-# managed = False
- db_table = 'actionEvidenceXRay'
- unique_together = (('idcmpdaction', 'codepdb'),)
+ unique_together = (('compound_id', 'test_activity_description_id', 'activity_type_id'),)
+class TestCytotoxDescription(models.Model):
+ biblio_id = models.ForeignKey(Bibliography)
+ test_name = models.CharField('Cytotoxicity test name', max_length=100)
+ cell_line = models.ForeignKey(CellLine)
+ compound_concentration = models.DecimalField('Compound concentration in μM', max_digits=7, decimal_places=3, blank=True, null=True)
-class Cmpdaction(models.Model):
- idcmpdaction = models.AutoField(='IDCmpdAction', primary_key=True)
- idcomplexebound = models.ForeignKey('Complexe', models.DO_NOTHING, ='IDComplexeBound')
- idcompound = models.ForeignKey('Compound', models.DO_NOTHING, ='IDCompound')
- activationmode = models.CharField(='ActivationMode', max_length=11)
- modulationtype = models.CharField(='ModulationType', max_length=10)
+class CompoundCytotoxicityResult(models.Model):
+ compound_id = models.ForeignKey(Compound)
+ test_cytotoxicity_description_id = models.ForeignKey(TestCytotoxDescription)
+ toxicity = models.BooleanField('Toxicity', default=False)
class Meta:
-# managed = False
- db_table = 'cmpdAction'
-
-
-class Cmpdactiveresult(models.Model):
- idcompound = models.ForeignKey('Compound', models.DO_NOTHING, ='IDCompound')
- idtestactivity = models.ForeignKey('Testactivitydescription', models.DO_NOTHING, ='IDTestActivity')
- activitytype = models.CharField(='ActivityType', max_length=5)
- activity = models.DecimalField(='Activity', max_digits=4, decimal_places=2)
- pourcentinhib = models.IntegerField(='PourcentInhib', blank=True, null=True)
+ unique_together = (('compound_id', 'test_cytotoxicity_description_id'),)
+
+class AdministrationMode(models.Model):
+ name = models.CharField('Administration mode', max_length=20, blank=True, null=True)
+
+class TestPKDescription(models.Model):
+ biblio_id = models.ForeignKey(Bibliography)
+ test_name = models.CharField('Pharmacokinetic test name', max_length=100)
+ organism = models.ForeignKey(Taxonomy)
+ administration_mode = models.ForeignKey(AdministrationMode, blank=True, null=True)
+ dose = models.DecimalField('Dose in mg/kg', max_digits=7, decimal_places=4, blank=True, null=True)
+ dose_interval = models.IntegerField('Dose interval, in hours', blank=True, null=True)
+
+class CompoundPKResult(models.Model):
+ compound_id = models.ForeignKey(Compound)
+ test_pk_description_id = models.ForeignKey(TestPKDescription)
+ tolerated = models.NullBooleanField('Tolerated', null=True)
+ auc = models.IntegerField('Area under curve (ng.mL-1.hr)', blank=True, null=True)
+ clearance = models.DecimalField('Clearance (mL/hr)', max_digits=7, decimal_places=3, blank=True, null=True)
+ cmax = models.DecimalField('Maximal concentration (ng/mL)', max_digits=7, decimal_places=3, blank=True, null=True)
+ oral_bioavailability = models.IntegerField('Oral Bioavailability (%F)', blank=True, null=True)
+ t_demi = models.IntegerField('t½', blank=True, null=True)
+ t_max = models.IntegerField('tmax', blank=True, null=True)
+ voldistribution = models.DecimalField('Volume distribution (Vd)', max_digits=5, decimal_places=2, blank=True, null=True)
class Meta:
-# managed = False
- db_table = 'cmpdActiveResult'
- unique_together = (('idcompound', 'idtestactivity', 'activitytype'),)
-
+ unique_together = (('compound_id', 'test_pk_description_id'),)
-class Cmpdcytotoxresult(models.Model):
- idcompound = models.ForeignKey('Compound', models.DO_NOTHING, ='IDCompound')
- idtestcytotox = models.ForeignKey('Testcytotoxdescription', models.DO_NOTHING, ='IDTestCytotox')
- toxicity = models.CharField(='Toxicity', max_length=1)
-
- class Meta:
-# managed = False
- db_table = 'cmpdCytotoxResult'
- unique_together = (('idcompound', 'idtestcytotox'),)
+class CmpdAction(models.Model):
+ ACTIVATION_MODES = (
+ ('O', 'Orthosteric'),
+ ('A', 'Allosteric'),
+ ('U', 'Unspecified')
+ )
+ MODULATION_TYPES = (
+ ('I', 'Inhibition'),
+ ('S', 'Stabilization')
+ )
+ complex_id = models.ForeignKey(ProteinDomainBoundComplex)
+ compound_id = models.ForeignKey(Compound)
+ activation_mode = models.CharField('Activation mode', max_length=1, choices=ACTIVATION_MODES)
+ modulation_type = models.CharField('Modulation type', max_length=1, choices=MODULATION_TYPES)
-class Cmpdinactiveresult(models.Model):
+""""
+class Actionevidencetest(models.Model):
+ idcmpdaction = models.ForeignKey('Cmpdaction', models.DO_NOTHING, ='IDCmpdAction')
idtestactivity = models.ForeignKey('Testactivitydescription', models.DO_NOTHING, ='IDTestActivity')
- idcompound = models.ForeignKey('Compound', models.DO_NOTHING, ='IDCompound')
- pourcentinhib = models.IntegerField(='PourcentInhib', blank=True, null=True)
-
- class Meta:
-# managed = False
- db_table = 'cmpdInactiveResult'
- unique_together = (('idtestactivity', 'idcompound'),)
-
-
-class Cmpdpkresult(models.Model):
- idcompound = models.ForeignKey('Compound', models.DO_NOTHING, ='IDCompound')
- idtestpk = models.ForeignKey('Testpkdescription', models.DO_NOTHING, ='IDTestPK')
- tolerated = models.CharField(='Tolerated', max_length=1)
- auc = models.IntegerField(='AUC', blank=True, null=True)
- clearance = models.DecimalField(='Clearance', max_digits=7, decimal_places=3, blank=True, null=True)
- cmax = models.DecimalField(='Cmax', max_digits=7, decimal_places=3, blank=True, null=True)
- oralbioavailability = models.IntegerField(='OralBioavailability', blank=True, null=True)
- tdemi = models.IntegerField(='Tdemi', blank=True, null=True)
- tmax = models.IntegerField(='Tmax', blank=True, null=True)
- voldistribution = models.DecimalField(='VolDistribution', max_digits=5, decimal_places=2, blank=True, null=True)
-
- class Meta:
-# managed = False
- db_table = 'cmpdPKResult'
- unique_together = (('idcompound', 'idtestpk'),)
-
-
-
- class Meta:
-# managed = False
- db_table = 'disease'
- unique_together = (('idppi', 'disease'),)
-
-
-class DjangoMigrations(models.Model):
- app = models.CharField(max_length=255)
- name = models.CharField(max_length=255)
- applied = models.DateTimeField()
-
- class Meta:
-# managed = False
- db_table = 'django_migrations'
-
-
-class Domain(models.Model):
- iddomain = models.AutoField(='IDDomain', primary_key=True)
- pfamid = models.CharField(='PfamID', max_length=20)
- pfamnumaccession = models.CharField(='PfamNumAccession', unique=True, max_length=10)
- domaindescription = models.CharField(='DomainDescription', max_length=100)
- domainfamily = models.CharField(='DomainFamily', max_length=25)
-
- class Meta:
-# managed = False
- db_table = 'domain'
-
-class Mddrsimilarity(models.Model):
- idcompound = models.ForeignKey(Compound, models.DO_NOTHING, ='IDCompound')
- idmddrcompound = models.ForeignKey(Mddrcompound, models.DO_NOTHING, ='IDMDDRCompound')
- versionmddr = models.CharField(='VersionMDDR', max_length=7)
- tanimoto = models.DecimalField(='Tanimoto', max_digits=6, decimal_places=5)
+ nbcopycompound = models.IntegerField(='NbCopyCompound', blank=True, null=True)
class Meta:
# managed = False
- db_table = 'mDDRSimilarity'
- unique_together = (('idcompound', 'idmddrcompound', 'versionmddr'),)
+ db_table = 'actionEvidenceTest'
+ unique_together = (('idcmpdaction', 'idtestactivity'),)
-class Ppi(models.Model):
- idppi = models.AutoField(='IDPPI', primary_key=True)
- idcomplexe1 = models.ForeignKey(Complexe, models.DO_NOTHING, ='IDComplexe1', related_name='cplx_id_1')
- idcomplexe2 = models.ForeignKey(Complexe, models.DO_NOTHING, ='IDComplexe2', related_name='cplx_id_2')
- idbindingsite1 = models.ForeignKey(Bindingsite, models.DO_NOTHING, ='IDBindingSite1', related_name='bs_id_1')
- idbindingsite2 = models.ForeignKey(Bindingsite, models.DO_NOTHING, ='IDBindingSite2', related_name='bs_id_2')
- family = models.CharField(='Family', max_length=25)
- class Meta:
-# managed = False
- db_table = 'ppi'
- unique_together = (('idcomplexe1', 'idcomplexe2', 'idbindingsite1', 'idbindingsite2'),)
-class Protein(models.Model):
- idprotein = models.AutoField(='IDProtein', primary_key=True)
- numuniprot = models.CharField(='NumUniprot', unique=True, max_length=10)
- protnamelg = models.CharField(='ProtNameLg', max_length=75)
- protnamesh = models.CharField(='ProtNameSh', max_length=50)
- protalias = models.CharField(='ProtAlias', unique=True, max_length=30)
- protnamesp = models.CharField(='ProtNameSp', max_length=30)
- organism = models.CharField(='Organism', max_length=80)
-
- class Meta:
-# managed = False
- db_table = 'protein'
class Refcmpdbiblio(models.Model):
@@ -438,46 +362,4 @@ class Refcmpdbiblio(models.Model):
db_table = 'refCmpdBiblio'
unique_together = (('idcompound', 'idbiblio'),)
-
-class Refproteinfonction(models.Model):
- idprotein = models.ForeignKey(Protein, models.DO_NOTHING, ='IDProtein')
- protfonctionsp = models.CharField(='ProtFonctionSP', max_length=200)
-
- class Meta:
-# managed = False
- db_table = 'refProteinFonction'
- unique_together = (('protfonctionsp', 'idprotein'),)
-
-
-
- class Meta:
-# managed = False
- db_table = 'testActivityDescription'
-
-
-class Testcytotoxdescription(models.Model):
- idtestcytotox = models.AutoField(='IDTestCytotox', primary_key=True)
- idbiblio = models.ForeignKey(Biblio, models.DO_NOTHING, ='IDBiblio')
- testnamecytotox = models.CharField(='TestNameCytotox', max_length=40)
- cellline = models.CharField(='CellLine', max_length=50)
- conccmpd = models.DecimalField(='ConcCmpd', max_digits=7, decimal_places=3, blank=True, null=True)
-
- class Meta:
-# managed = False
- db_table = 'testCytotoxDescription'
-
-
-class Testpkdescription(models.Model):
- idtestpk = models.AutoField(='IDTestPK', primary_key=True)
- idbiblio = models.ForeignKey(Biblio, models.DO_NOTHING, ='IDBiblio')
- testnamepk = models.CharField(='TestNamePK', max_length=40)
- animal = models.CharField(='Animal', max_length=100)
- administrationmode = models.CharField(='AdministrationMode', max_length=2, blank=True, null=True)
- concentration = models.DecimalField(='Concentration', max_digits=7, decimal_places=3, blank=True, null=True)
- dose = models.DecimalField(='Dose', max_digits=7, decimal_places=2, blank=True, null=True)
- doseinterval = models.IntegerField(='DoseInterval', blank=True, null=True)
-
- class Meta:
-# managed = False
- db_table = 'testPKDescription'
"""