diff --git a/ippisite/ippidb/forms.py b/ippisite/ippidb/forms.py
index 12e9955684d1fcf9aeb97bfd3aad5ebb72355aaf..412314e2c107b76e3b93748732f912c72d4b1104 100644
--- a/ippisite/ippidb/forms.py
+++ b/ippisite/ippidb/forms.py
@@ -31,10 +31,6 @@ class PDBForm(forms.Form):
validate_pdb_exists
])
-PDBFormSet = formset_factory(PDBForm)
-formset = PDBFormSet()
-
-
class ProteinForm(ModelForm):
class Meta:
@@ -81,11 +77,12 @@ class ProteinDomainComplexForm(ModelForm):
class Meta:
model = ProteinDomainComplex
fields = ['protein','domain']
-
- def __init__(self, *args, **kwargs):
+
+ def __init__(self, id, *args, **kwargs):
super(ProteinDomainComplexForm, self).__init__(*args, **kwargs)
- self.fields['protein'].queryset = ProteinDomainComplex.objects.filter(id='953')
- self.fields['domain'].queryset = ProteinDomainComplex.objects.filter(id='953')
+ self.fields['protein'].queryset = ProteinDomainComplex.objects.filter(id=id)
+ self.fields['domain'].queryset = ProteinDomainComplex.objects.filter(id=id)
+
class PpiForm(ModelForm):
diff --git a/ippisite/ippidb/static/css/ippidb.css b/ippisite/ippidb/static/css/ippidb.css
index 794a9f7c0330f1280320d8e4a772c4565e0dae68..c15578b667fb45bd477dff178704991370f61bfa 100644
--- a/ippisite/ippidb/static/css/ippidb.css
+++ b/ippisite/ippidb/static/css/ippidb.css
@@ -170,10 +170,13 @@ div.tabs {
}
.jumbotron {
- padding: 40px 15px;
+ padding: 50px;
margin-bottom: 0px;
color: inherit;
background-image: url("../images/banner.png");
+ background-repeat: no-repeat;
+ background-color: #F9F9F9;
+ background-size: cover;
}
#home div.jumbotron{
@@ -544,6 +547,10 @@ font-size: 42px;
width:80%;
}
+table {
+ width:100%;
+}
+
button {
font-family:"BrandonGrotesqueReg";
}
@@ -630,6 +637,8 @@ display:block;
.box {
margin-top: 50px;
position: relative;
+ width: 1200px;
+ height: 500px;
}
.box__inner {
@@ -711,6 +720,11 @@ display:block;
/* FORMS */
+.form_div {
+ margin: 0 auto;
+ width: 43%
+}
+
#Form{
border: 1px solid;
padding: 15px;
@@ -719,10 +733,6 @@ display:block;
min-height: 350px;
}
-form {
- width : 80%;
-}
-
.readonly {
background-color: #E8E0E0;
color: #8D8889;
@@ -771,7 +781,6 @@ body {
#id_IdForm-source {
overflow: hidden;
- width: 400px;
padding-bottom: 5px;
}
@@ -818,7 +827,7 @@ body {
}
#ck-button label {
- width: 400px;
+ width: 100%;
}
#ck-button label span {
@@ -1004,7 +1013,6 @@ body {
#id_ProteinDomainComplexTypeForm-stabilized {
overflow: hidden;
- width: 600px;
padding-bottom: 5px;
display: flex;
flex-wrap: wrap;
@@ -1437,17 +1445,19 @@ body {
margin: 5px;
padding: 10px;
display: inline-flex;
+ margin-left: -150px;
+ margin-right: -150px;
}
button, input, select, textarea {
line-height: inherit;
font-family: "BrandonGrotesqueReg";
- width: 400px;
border-bottom: 1px solid #2d96fa;
border-top: 1px solid #E3E9EB;
border-left: 1px solid #E3E9EB;
border-right: 1px solid #E3E9EB;
text-align: center;
+ width: 100%
}
[type="reset"], [type="submit"], button, html [type="button"] {
@@ -1491,6 +1501,13 @@ button, input, select, textarea {
margin-bottom: 15px;
}
+.step_step_desc {
+ padding: 15px;
+ margin-bottom: 15px;
+ margin-left: -150px;
+ margin-right: -150px;
+}
+
.small_icon {
width:30%;
@@ -1516,6 +1533,8 @@ button, input, select, textarea {
background-color: rgb(227, 233, 235);
padding: 10px;
margin: 10px;
+ margin-left: -81px;
+ margin-right: -81px;
}
#type_title h1{
diff --git a/ippisite/ippidb/templates/BibliographyForm.html b/ippisite/ippidb/templates/BibliographyForm.html
index 6fcb804c5871a2296581bb91ad632932b7c997cf..cf11a4bdc0cfaab6b1d7baa645d80eb1fda86876 100644
--- a/ippisite/ippidb/templates/BibliographyForm.html
+++ b/ippisite/ippidb/templates/BibliographyForm.html
@@ -15,61 +15,63 @@
<div class="step_desc">
<p> Please provide a valid ID for your bibliographic source, either a PubMed ID or WIPO ID. This ID should correspond to a bibliographic source in its final format. Therefore, PubMed articles in « Just Accepted » format should not be used as a source of data as they are not considered the official version of record. </p>
</div>
- <form action="" method="post">
- {% csrf_token %}
- <table>
- {{ wizard.management_form }}
- {{ wizard.form.errors}}
- {{ wizard.form.non_field_errors}}
- {% block custom_form %}{% endblock %}
-
- {% if wizard.form.forms %}
- {{ wizard.form.management_form }}
- {% for form in wizard.form.forms %}
- {{ form }}
- {% endfor %}
- {% else %}
- <div>
- <div id="id_IdForm-source">
- {% for radio in wizard.form.source %}
- {{ radio.tag }}
- <label for="{{ radio.id_for_label }}">
- <span>{{ radio.choice_label }}</span>
- </label>
- {% endfor %}
+ <div class="form_div">
+ <form action="" method="post">
+ {% csrf_token %}
+ <table>
+ {{ wizard.management_form }}
+ {{ wizard.form.errors}}
+ {{ wizard.form.non_field_errors}}
+ {% block custom_form %}{% endblock %}
+
+ {% if wizard.form.forms %}
+ {{ wizard.form.management_form }}
+ {% for form in wizard.form.forms %}
+ {{ form }}
+ {% endfor %}
+ {% else %}
+ <div>
+ <div id="id_IdForm-source">
+ {% for radio in wizard.form.source %}
+ {{ radio.tag }}
+ <label for="{{ radio.id_for_label }}">
+ <span>{{ radio.choice_label }}</span>
+ </label>
+ {% endfor %}
+ </div>
+ {{ wizard.form.id_source}}
</div>
- {{ wizard.form.id_source}}
- </div>
- <a> Get infos </a>
- <div id="publi_infos"> blablabla publi
- <p> This publication contains :<br/></p>
- <div id="ck-button">
- <label>
- <input type="checkbox"><span>{{ wizard.form.cytotox.label }}</span>
- </label>
- <label>
- <input type="checkbox"><span>{{ wizard.form.in_silico.label }}</span>
- </label>
- <label>
- <input type="checkbox"><span>{{ wizard.form.in_vitro.label }}</span>
- </label>
- <label>
- <input type="checkbox"><span>{{ wizard.form.in_vivo.label }}</span>
- </label>
- <label>
- <input type="checkbox"><span>{{ wizard.form.in_cellulo.label }}</span>
- </label>
- <label>
- <input type="checkbox"><span>{{ wizard.form.pharmacokinetic.label }}</span>
- </label>
- <label>
- <input type="checkbox"><span>{{ wizard.form.xray.label }}</span>
- </label>
+ <a> Get infos </a>
+ <div id="publi_infos"> blablabla publi
+ <p> This publication contains :<br/></p>
+ <div id="ck-button">
+ <label>
+ <input type="checkbox"><span>{{ wizard.form.cytotox.label }}</span>
+ </label>
+ <label>
+ <input type="checkbox"><span>{{ wizard.form.in_silico.label }}</span>
+ </label>
+ <label>
+ <input type="checkbox"><span>{{ wizard.form.in_vitro.label }}</span>
+ </label>
+ <label>
+ <input type="checkbox"><span>{{ wizard.form.in_vivo.label }}</span>
+ </label>
+ <label>
+ <input type="checkbox"><span>{{ wizard.form.in_cellulo.label }}</span>
+ </label>
+ <label>
+ <input type="checkbox"><span>{{ wizard.form.pharmacokinetic.label }}</span>
+ </label>
+ <label>
+ <input type="checkbox"><span>{{ wizard.form.xray.label }}</span>
+ </label>
+ </div>
</div>
- </div>
- {% endif %}
- </table>
- <input type="submit" value="{% trans "Next step" %}"/>
- </form>
+ {% endif %}
+ </table>
+ <input type="submit" value="{% trans "Next step" %}"/>
+ </form>
+ </div>
</div>
{% endblock %}
\ No newline at end of file
diff --git a/ippisite/ippidb/templates/PDBForm.html b/ippisite/ippidb/templates/PDBForm.html
index 69d40bf9c6adbfbe41376bcb2dd1caea89d30807..701676fe34d90ad6d1b87df8a46bd08b05c43fc4 100644
--- a/ippisite/ippidb/templates/PDBForm.html
+++ b/ippisite/ippidb/templates/PDBForm.html
@@ -15,22 +15,26 @@
<div class="step_desc">
<p>Please provide a valid PDB code that contains the structure of the full PPI complex for which you have data. If you have several PDB codes please list them all as they may contain information about homologous protein partners. The information within the PDB file will be used to prefill information of the corresponding proteins and domains participating to the PPI.</p>
</div>
- <form action="" method="post">
- {% csrf_token %}
- <table>
- {{ wizard.management_form }}
- {{ wizard.form.non_field_errors}}
- {% block custom_form %}{% endblock %}
-
- {% if wizard.form.forms %}
- {{ wizard.form.management_form }}
- {{ formset.management_form }}
- {% for form in wizard.form.forms %}
- {{ form }}
- {% endfor %}
- {% endif %}
- </table>
- <input type="submit" value="{% trans "Next step" %}"/>
- </form>
+ <div class="form_div">
+ <form action="" method="post">
+ {% csrf_token %}
+ <table>
+ {{ wizard.management_form }}
+ {{ wizard.form.non_field_errors}}
+ {% block custom_form %}{% endblock %}
+
+ {% if wizard.form.forms %}
+ {{ wizard.form.management_form }}
+ {{ formset.management_form }}
+ {% for form in wizard.form.forms %}
+ test {{ form }}
+ {% endfor %}
+ {% else %}
+ {{form.pdb_id}}
+ {% endif %}
+ </table>
+ <input type="submit" value="{% trans "Next step" %}"/>
+ </form>
+ </div>
</div>
{% endblock %}
diff --git a/ippisite/ippidb/templates/PpiForm.html b/ippisite/ippidb/templates/PpiForm.html
index 243a2393865db96cca83470089f2430f04a3e982..a65384f996fae0d0e53b692e75fdf7afe584b4f4 100644
--- a/ippisite/ippidb/templates/PpiForm.html
+++ b/ippisite/ippidb/templates/PpiForm.html
@@ -16,28 +16,31 @@
<p>You have selected a <span style="color:#2d96fa;">{{ complex_type }}</span> that is <span style="color:#2d96fa;">{{ complex_choice }}</span> by the binding of PPI modulator. <br/>
Now that you have created a complexe that participate to the formation of the PPI, please choose the stoichiometry of the PPI.</p>
</div>
- <form action="" method="post">
- {% csrf_token %}
- <table>
- {{ wizard.management_form }}
- {{ wizard.form.errors}}
- {{ wizard.form.non_field_errors}}
- {% block custom_form %}{% endblock %}
-
- {% if wizard.form.forms %}
- {{ wizard.form.management_form }}
- {% for form in wizard.form.forms %}
- {{ form }}
- {% endfor %}
- {% else %}
- <div class="inline_box_complex">
- <div class="inline_label"> Symmetry: </div>
- <div class="PperPocket">{{ pdb_id }}</div>
- <div class="inline_field"> {{ form.symmetry }}</div>
- </div>
- {% endif %}
- </table>
- <input type="submit" value="{% trans "submit" %}"/>
- </form>
+ <div class="form_div">
+ <form action="" method="post">
+ {% csrf_token %}
+ <table>
+ {{ wizard.management_form }}
+ {{ wizard.form.errors}}
+ {{ wizard.form.non_field_errors}}
+ {% block custom_form %}{% endblock %}
+
+ {% if wizard.form.forms %}
+ {{ wizard.form.management_form }}
+ {% for form in wizard.form.forms %}
+ {{ form }}
+ {% endfor %}
+ {% else %}
+ <div class="inline_box_complex">
+ <div class="inline_label"> PPI: </div>
+ <div class="PperPocket">{{ form.pdb_id }}</div>
+ <div clas="inline_label">{{ form.pockets_nb}}</div>
+ <div class="inline_field"> {{ form.symmetry }}</div>
+ </div>
+ {% endif %}
+ </table>
+ <input type="submit" value="{% trans "submit" %}"/>
+ </form>
+ <div>
</div>
{% endblock %}
\ No newline at end of file
diff --git a/ippisite/ippidb/templates/ProteinDomainComplexForm.html b/ippisite/ippidb/templates/ProteinDomainComplexForm.html
index 9284a87ec3658cc84a3d0623d7bfab52d0190c8e..6c28a1af92c6eb612288c438b8d1246e9be4777a 100644
--- a/ippisite/ippidb/templates/ProteinDomainComplexForm.html
+++ b/ippisite/ippidb/templates/ProteinDomainComplexForm.html
@@ -13,6 +13,7 @@
</div>
<div id="Form">
+ <div class="form_div">
<form action="" method="post">
{% csrf_token %}
{{ wizard.management_form }}
@@ -26,7 +27,7 @@
{{ form }}
{% endfor %}
{% else %}
- <div class="step_desc">
+ <div class="step_step_desc">
<p>You have selected a <span style="color:#2d96fa;">{{ complex_type }}</span> that is <span style="color:#2d96fa;">{{ complex_choice }}</span> by the binding of PPI modulator.<br/>
According to this architecture you need to specify:<br/>
</p>
@@ -90,5 +91,6 @@
<input type="submit" value="{% trans "Next step" %}"/>
</form>
+ </div>
</div>
{% endblock %}
\ No newline at end of file
diff --git a/ippisite/ippidb/templates/ProteinDomainComplexTypeForm.html b/ippisite/ippidb/templates/ProteinDomainComplexTypeForm.html
index d92f0787a2486c598eee9ff8e9d12e819f6c5f29..95945d7032f1810dcf6e19b0a1f75976346972c2 100644
--- a/ippisite/ippidb/templates/ProteinDomainComplexTypeForm.html
+++ b/ippisite/ippidb/templates/ProteinDomainComplexTypeForm.html
@@ -14,77 +14,79 @@
<div id="Form">
<div class="step_desc">
<p>Now you need to select an architecture for the PPI complex among the proposed schematics below.</br>
-If your PPI complex is not among them, please select « Custom »</p>
+If your PPI complex is not among them, please select « Custom » {{ pdb }}</p>
</div>
- <form action="" method="post">
- {% csrf_token %}
- <table>
- {{ wizard.management_form }}
- {{ wizard.form.non_field_errors}}
- {% block custom_form %}{% endblock %}
-
- {% if wizard.form.forms %}
- {{ wizard.form.management_form }}
- {% for form in wizard.form.forms %}
- {% endfor %}
- {% else %}
- <div id="id_ProteinDomainComplexTypeForm-stabilized">
- PPI Complex Type: {{ form.complexChoice }}
- <!--<select>
- <option value="inhibited">Inhibited</option>
- <option value="stabilized">Stabilized</option>
- </select>-->
- </div>
- <div id="type_style" class="inhibited box">
- <div id="type_title">
- <h1>Inhibited</h1>
- </div>
- <div id="id_ProteinDomainComplexTypeForm-inhibited">
- {% for radio in wizard.form.complexType %}
- <!-- I'm sorry for this bad/ugly code but I couldn't figure how to do it in a proper way - If you have a better idea feel free to let me know rachel.torchet@pasteur.fr -->
- {% if "Inhib_" in radio.choice_label%}
- <!-- If the label of the radio button start with Inhib (I had to put a prefix to seperate Inhibitor and Stabilizator) -->
- {% with LabelName=radio.choice_label|cut:"Inhib_" %}
- <!-- Then cut this prefix to create a better label -->
- {% with InhibClass=LabelName|cut:" " %}
- <!-- Then discard the blank spaces to get a tag for the corresponding CSS Class -->
- <div class="imageBack_Inhib_{{InhibClass}}">
- <!-- For each radio option there is a separate CSS class -->
- {{ radio.tag }}
- <label for="{{ radio.id_for_label }}">
- <span>{{InhibClass}}</span>
- </label>
- </div>
- {% endwith %}
- {% endwith %}
- {% endif %}
- {% endfor %}
+ <div class="form_div">
+ <form action="" method="post">
+ {% csrf_token %}
+ <table>
+ {{ wizard.management_form }}
+ {{ wizard.form.non_field_errors}}
+ {% block custom_form %}{% endblock %}
+
+ {% if wizard.form.forms %}
+ {{ wizard.form.management_form }}
+ {% for form in wizard.form.forms %}
+ {% endfor %}
+ {% else %}
+ <div id="id_ProteinDomainComplexTypeForm-stabilized">
+ PPI Complex Type: {{ form.complexChoice }}
+ <!--<select>
+ <option value="inhibited">Inhibited</option>
+ <option value="stabilized">Stabilized</option>
+ </select>-->
</div>
- </div>
- <div id="type_style" class="stabilized box">
- <div id="type_title">
- <h1>Stabilized</h1>
+ <div id="type_style" class="inhibited box">
+ <div id="type_title">
+ <h1>Inhibited</h1>
+ </div>
+ <div id="id_ProteinDomainComplexTypeForm-inhibited">
+ {% for radio in wizard.form.complexType %}
+ <!-- I'm sorry for this bad/ugly code but I couldn't figure how to do it in a proper way - If you have a better idea feel free to let me know rachel.torchet@pasteur.fr -->
+ {% if "Inhib_" in radio.choice_label%}
+ <!-- If the label of the radio button start with Inhib (I had to put a prefix to seperate Inhibitor and Stabilizator) -->
+ {% with LabelName=radio.choice_label|cut:"Inhib_" %}
+ <!-- Then cut this prefix to create a better label -->
+ {% with InhibClass=LabelName|cut:" " %}
+ <!-- Then discard the blank spaces to get a tag for the corresponding CSS Class -->
+ <div class="imageBack_Inhib_{{InhibClass}}">
+ <!-- For each radio option there is a separate CSS class -->
+ {{ radio.tag }}
+ <label for="{{ radio.id_for_label }}">
+ <span>{{InhibClass}}</span>
+ </label>
+ </div>
+ {% endwith %}
+ {% endwith %}
+ {% endif %}
+ {% endfor %}
+ </div>
</div>
- <div id="id_ProteinDomainComplexTypeForm-stabilized">
- {% for radio in wizard.form.complexType %}
- {% if "Stab_" in radio.choice_label%}
- {% with LabelName=radio.choice_label|cut:"Stab_" %}
- {% with StabClass=LabelName|cut:" " %}
- <div class="imageBack_Stab_{{StabClass}}">
- {{ radio.tag }}
- <label for="{{ radio.id_for_label }}">
- <span>{{ StabClass}}</span>
- </label>
- </div>
- {% endwith %}
- {% endwith %}
- {% endif %}
- {% endfor %}
+ <div id="type_style" class="stabilized box">
+ <div id="type_title">
+ <h1>Stabilized</h1>
+ </div>
+ <div id="id_ProteinDomainComplexTypeForm-stabilized">
+ {% for radio in wizard.form.complexType %}
+ {% if "Stab_" in radio.choice_label%}
+ {% with LabelName=radio.choice_label|cut:"Stab_" %}
+ {% with StabClass=LabelName|cut:" " %}
+ <div class="imageBack_Stab_{{StabClass}}">
+ {{ radio.tag }}
+ <label for="{{ radio.id_for_label }}">
+ <span>{{ StabClass}}</span>
+ </label>
+ </div>
+ {% endwith %}
+ {% endwith %}
+ {% endif %}
+ {% endfor %}
+ </div>
</div>
- </div>
- {% endif %}
- </table>
- <input type="submit" value="{% trans "Next step" %}"/>
- </form>
+ {% endif %}
+ </table>
+ <input type="submit" value="{% trans "Next step" %}"/>
+ </form>
+ </div>
</div>
{% endblock %}
\ No newline at end of file
diff --git a/ippisite/ippidb/templates/about.html b/ippisite/ippidb/templates/about.html
index 8c80686f515f29efd79c1715e5d86252247256fd..6bd09a8efbf3ca8751569a115488d8eda0fb020e 100644
--- a/ippisite/ippidb/templates/about.html
+++ b/ippisite/ippidb/templates/about.html
@@ -1,9 +1,10 @@
-{% extends "base.html" %}
+{% extends "index.html" %}
{% block title %}inhibitors of Protein-Protein Interaction Database{% endblock %}
{% block content %}
+{% block secondarynav %}
<div id="mainnav">
<nav class="secondary-nav">
<div class="inner-wrap">
@@ -18,17 +19,19 @@
<a href="/about/physicochemistry">Physicochemistry</a>
</li>
<li>
- <a href="/about/drug-candidate">Drug Candidate</a>
+ <a href="/about/drug-candidate">Drug candidate</a>
</li>
</ul>
</div>
</nav>
</div>
+{% endblock %}
+
<div class="inner-wrap">
<nav class="breadcrumb" role="navigation">
<div id="breadcrumb-label" class="breadcrumb-label">You are here</div>
<div aria-labelledby="breadcrumb-label">
- Fonction Fil d'Arianne
+ {% block breadcrumb %} {{block.super}} About {% endblock %}
</div>
</nav>
<div id="main-wrapper" class="page">
diff --git a/ippisite/ippidb/templates/add.html b/ippisite/ippidb/templates/add.html
index 604a9568854d47e706dfdd050d480d58379da88a..2e6b988eb61458071fdf407d1d3ae5873b576d45 100644
--- a/ippisite/ippidb/templates/add.html
+++ b/ippisite/ippidb/templates/add.html
@@ -1,4 +1,4 @@
-{% extends "base.html" %}
+{% extends "admin-session.html" %}
{% block title %}inhibitors of Protein-Protein Interaction Database{% endblock %}
@@ -25,7 +25,7 @@
<nav class="breadcrumb" role="navigation">
<div id="breadcrumb-label" class="breadcrumb-label">You are here</div>
<div aria-labelledby="breadcrumb-label">
- Fonction Fil d'Arianne
+ {% block breadcrumb %} {{block.super}} > Add New Content{% endblock %}
</div>
</nav>
<div id="main-wrapper" class="page">
diff --git a/ippisite/ippidb/templates/admin-session.html b/ippisite/ippidb/templates/admin-session.html
index df0c6dd9cf3b9709e61a524b797f648bcf78d484..9885374b932664c83e02cedfcc9cfdc40eb1a899 100644
--- a/ippisite/ippidb/templates/admin-session.html
+++ b/ippisite/ippidb/templates/admin-session.html
@@ -1,4 +1,4 @@
-{% extends "base.html" %}
+{% extends "index.html" %}
{% block title %}inhibitors of Protein-Protein Interaction Database{% endblock %}
@@ -15,7 +15,7 @@
<a href="/admin-session/add/BibliographyForm">Add New Content</a>
</li>
<li>
- <a hfref="/admin-session/update">Update Content</a>
+ <a href="/admin-session/update">Update Content</a>
</li>
</ul>
</div>
@@ -25,7 +25,7 @@
<nav class="breadcrumb" role="navigation">
<div id="breadcrumb-label" class="breadcrumb-label">You are here</div>
<div aria-labelledby="breadcrumb-label">
- Fonction Fil d'Arianne
+ {% block breadcrumb %} {{block.super}} Admin {% endblock %}
</div>
</nav>
<div id="main-wrapper" class="page">
diff --git a/ippisite/ippidb/templates/done.html b/ippisite/ippidb/templates/done.html
new file mode 100644
index 0000000000000000000000000000000000000000..4db4edb7f4702febb2f2fcc056408093272c653f
--- /dev/null
+++ b/ippisite/ippidb/templates/done.html
@@ -0,0 +1,22 @@
+{% extends "add.html" %}
+{% load i18n %}
+
+{% block form %}
+<div id="step">
+ <ul>
+ <li><a href='/admin-session/add/BibliographyForm/'>{% trans "Bibliography" %}</a></li>
+ <li><a href='/admin-session/add/PDBForm/'>{% trans "PDB id" %}</a></li>
+ <li><a href='/admin-session/add/ProteinDomainComplexTypeForm/'>{% trans "Architecture" %}</a></li>
+ <li><a href='/admin-session/add/ProteinDomainComplexForm/'>{% trans "Composition" %}</a></li>
+ <li><a href='/admin-session/add/PPIForm/'>{% trans "PPI" %}</a></li>
+ </ul>
+</div>
+<div id="Form">
+ <div class="form_div">
+ CONGRATULATIONS!!! New publication added
+ {% for form in form_data %}
+ {{ form.id_source }}
+ {% endfor %}
+ </div>
+</div>
+{% endblock %}
diff --git a/ippisite/ippidb/templates/drug-candidate.html b/ippisite/ippidb/templates/drug-candidate.html
index cb12b7ed87a4aa505bdea5b76b621510fc39fcc3..f6d5d96e5885840f6fff1e30ade6c04add9dd36a 100644
--- a/ippisite/ippidb/templates/drug-candidate.html
+++ b/ippisite/ippidb/templates/drug-candidate.html
@@ -1,4 +1,4 @@
-{% extends "base.html" %}
+{% extends "about.html" %}
{% block title %}inhibitors of Protein-Protein Interaction Database{% endblock %}
@@ -18,7 +18,7 @@
<a href="/about/physicochemistry">Physicochemistry</a>
</li>
<li>
- <a href="/about/drug-candidate">Drug Candidate</a>
+ <a href="/about/drug-candidate">Drug candidate</a>
</li>
</ul>
</div>
@@ -28,7 +28,7 @@
<nav class="breadcrumb" role="navigation">
<div id="breadcrumb-label" class="breadcrumb-label">You are here</div>
<div aria-labelledby="breadcrumb-label">
- Fonction Fil d'Arianne
+ {% block breadcrumb %} {{block.super}} > Drug candidate {% endblock %}
</div>
</nav>
<div id="main-wrapper" class="page">
diff --git a/ippisite/ippidb/templates/general.html b/ippisite/ippidb/templates/general.html
index 8cede2decda95cc90aca2ecb8e02be41270a24d6..792716bf636e01370d4c8d42b18008070ed5ee1c 100644
--- a/ippisite/ippidb/templates/general.html
+++ b/ippisite/ippidb/templates/general.html
@@ -1,4 +1,4 @@
-{% extends "base.html" %}
+{% extends "about.html" %}
{% block title %}inhibitors of Protein-Protein Interaction Database{% endblock %}
@@ -28,7 +28,7 @@
<nav class="breadcrumb" role="navigation">
<div id="breadcrumb-label" class="breadcrumb-label">You are here</div>
<div aria-labelledby="breadcrumb-label">
- Fonction Fil d'Arianne
+ {% block breadcrumb %} {{block.super}} > General informations {% endblock %}
</div>
</nav>
<div id="main-wrapper" class="page">
diff --git a/ippisite/ippidb/templates/index.html b/ippisite/ippidb/templates/index.html
index ec88e4b02e1e74ddc0c882bf39923acae30ef4df..1d9aa96e95d689e4dca1e363093676cf5a18eb17 100644
--- a/ippisite/ippidb/templates/index.html
+++ b/ippisite/ippidb/templates/index.html
@@ -5,12 +5,6 @@
{% block content %}
<div class="inner-wrap">
- <nav class="breadcrumb" role="navigation">
- <div id="breadcrumb-label" class="breadcrumb-label">You are here</div>
- <div aria-labelledby="breadcrumb-label">
- Fonction Fil d'Arianne
- </div>
- </nav>
<div id="main-wrapper" class="page">
<div id="main">
<div id="content" class="main-content">
@@ -21,8 +15,10 @@
<div class="main__inner">
<div class="region region-content">
<div class="page-intro">
+ {% block pageintro %}
Lorem ipsum dolor sit amet, consectetur adipiscing elit. Nullam vulputate felis ac augue pretium, ac blandit lectus mattis. Vestibulum iaculis consequat facilisis. Duis porttitor erat mauris, non porttitor eros feugiat eu. Pellentesque id nisl vel nisl imperdiet convallis vel sed lectus. Class aptent taciti sociosqu ad litora torquent per conubia nostra, per inceptos himenaeos. Donec dolor urna, posuere vitae leo quis, hendrerit imperdiet enim. Nunc nec euismod nisi. Phasellus ut ante ante. <br/>
Maecenas sodales egestas porta. Sed et posuere justo. Nullam lectus lacus, gravida quis justo ac, convallis rhoncus orci. Mauris commodo risus at sapien malesuada, eget semper purus feugiat. Aliquam ut cursus ex. Donec vitae odio a sapien efficitur mattis in id enim. Maecenas pulvinar nunc ornare ligula condimentum elementum blandit at arcu. Donec id tincidunt turpis. Proin eu nisl iaculis, ultrices odio vitae, pharetra felis. Donec pellentesque non tellus vel porta. <br/>
+ {% endblock %}
</div>
<div class="main-publi">
<div class="latest-publi"> Latest publication</div>
diff --git a/ippisite/ippidb/templates/pharmacology.html b/ippisite/ippidb/templates/pharmacology.html
index b8b91875b06cbcc5cb3476829759a52ebdce9112..fd4c21ef3e35e17fb15270e7fc531d08ea5c3d5d 100644
--- a/ippisite/ippidb/templates/pharmacology.html
+++ b/ippisite/ippidb/templates/pharmacology.html
@@ -1,4 +1,4 @@
-{% extends "base.html" %}
+{% extends "about.html" %}
{% block title %}inhibitors of Protein-Protein Interaction Database{% endblock %}
@@ -18,7 +18,7 @@
<a href="/about/physicochemistry">Physicochemistry</a>
</li>
<li>
- <a href="/about/drug-candidate">Drug Candidate</a>
+ <a href="/about/drug-candidate">Drug candidate</a>
</li>
</ul>
</div>
@@ -28,7 +28,7 @@
<nav class="breadcrumb" role="navigation">
<div id="breadcrumb-label" class="breadcrumb-label">You are here</div>
<div aria-labelledby="breadcrumb-label">
- Fonction Fil d'Arianne
+ {% block breadcrumb %} {{block.super}} > Pharmacology {% endblock %}
</div>
</nav>
<div id="main-wrapper" class="page">
diff --git a/ippisite/ippidb/templates/physicochemistry.html b/ippisite/ippidb/templates/physicochemistry.html
index a388313c587f4ac484f01d9d8b553e854fcdff3a..7965b2fd797cc6ff0abce1e9f14f0e38577251ad 100644
--- a/ippisite/ippidb/templates/physicochemistry.html
+++ b/ippisite/ippidb/templates/physicochemistry.html
@@ -1,4 +1,4 @@
-{% extends "base.html" %}
+{% extends "about.html" %}
{% block title %}inhibitors of Protein-Protein Interaction Database{% endblock %}
@@ -18,7 +18,7 @@
<a href="/about/physicochemistry">Physicochemistry</a>
</li>
<li>
- <a href="/about/drug-candidate">Drug Candidate</a>
+ <a href="/about/drug-candidate">Drug candidate</a>
</li>
</ul>
</div>
@@ -28,7 +28,7 @@
<nav class="breadcrumb" role="navigation">
<div id="breadcrumb-label" class="breadcrumb-label">You are here</div>
<div aria-labelledby="breadcrumb-label">
- Fonction Fil d'Arianne
+ {% block breadcrumb %} {{block.super}} > Physicochemistry {% endblock %}
</div>
</nav>
<div id="main-wrapper" class="page">
diff --git a/ippisite/ippidb/views.py b/ippisite/ippidb/views.py
index 7e8e889edb07a45dbd59f1123b2dae5ab4ff296b..668943c08f314eac660abcc7c4828ef9520ef766 100644
--- a/ippisite/ippidb/views.py
+++ b/ippisite/ippidb/views.py
@@ -3,7 +3,7 @@ import ippidb
from django.shortcuts import render
from django.http import HttpResponseRedirect, Http404
from formtools.wizard.views import SessionWizardView, NamedUrlSessionWizardView
-from .forms import BibliographyForm, PDBForm, ProteinForm, ProteinDomainComplexTypeForm, ProteinDomainComplexForm, PpiForm, ProteinFormSet, PDBFormSet
+from .forms import BibliographyForm, PDBForm, ProteinForm, ProteinDomainComplexTypeForm, ProteinDomainComplexForm, PpiForm, ProteinFormSet
from .models import Protein, Bibliography, ProteinDomainComplex, RefCompoundBiblio
from .ws import get_pdb_uniprot_mapping
@@ -51,17 +51,18 @@ def adminSession(request):
return render(request, 'admin-session.html')
FORMS = [("BibliographyForm", ippidb.forms.BibliographyForm),
- ("PDBForm", ippidb.forms.PDBFormSet),
+ ("PDBForm", ippidb.forms.PDBForm),
("ProteinDomainComplexTypeForm",
ippidb.forms.ProteinDomainComplexTypeForm),
("ProteinDomainComplexForm", ippidb.forms.ProteinDomainComplexForm),
- ("PpiForm", ippidb.forms.PpiForm)]
+ ("PpiForm", ippidb.forms.PpiForm),]
TEMPLATES = {"BibliographyForm": "BibliographyForm.html",
"PDBForm": "PDBForm.html",
"ProteinDomainComplexTypeForm": "ProteinDomainComplexTypeForm.html",
"ProteinDomainComplexForm": "ProteinDomainComplexForm.html",
- "PpiForm": "PpiForm.html"}
+ "PpiForm": "PpiForm.html",
+ }
class IppiWizard(NamedUrlSessionWizardView):
@@ -69,64 +70,34 @@ class IppiWizard(NamedUrlSessionWizardView):
def get_context_data(self, **kwargs):
context=super(IppiWizard, self).get_context_data(**kwargs)
if self.steps.current == 'ProteinDomainComplexForm':
- context['complex_type']=self.storage.get_step_data('ProteinDomainComplexTypeForm').get('complex_type')
- context['complex_choice']=self.storage.get_step_data('ProteinDomainComplexTypeForm').get('complex_choice')
+ context['complex_choice']=self.storage.get_step_data('ProteinDomainComplexTypeForm').get('ProteinDomainComplexTypeForm-complexChoice')
+ context['complex_type']=self.storage.get_step_data('ProteinDomainComplexTypeForm').get('ProteinDomainComplexTypeForm-complexType')
+ context['pdb']=self.storage.get_step_data('PDBForm').get('PDBForm-pdb_id')
+ print("test2", self.storage.get_step_data('PDBForm').get('PDBForm-pdb_id'))
+
if self.steps.current == 'PpiForm':
- context['complex_type']=self.storage.get_step_data('ProteinDomainComplexTypeForm').get('complex_type')
- context['complex_choice']=self.storage.get_step_data('ProteinDomainComplexTypeForm').get('complex_choice')
- context['pdb_id']=self.storage.get_step_data('PDBForm').get('pdb_id')
- context['pdb_id']=context['pdb_id'][0]
+ context['complex_choice']=self.storage.get_step_data('ProteinDomainComplexTypeForm').get('ProteinDomainComplexTypeForm-complexChoice')
+ context['complex_type']=self.storage.get_step_data('ProteinDomainComplexTypeForm').get('ProteinDomainComplexTypeForm-complexType')
+ context['pdb_id']=self.storage.get_step_data('PDBForm').get('PDBForm-pdb_id')
return context
+ def get_form_initial(self, step):
+ initial = {}
+
+ # If at second step, add image path to initial data for canvas field
+ if step == 'PpiForm':
+ initial['pdb_id'] = self.storage.get_step_data('PDBForm').get('PDBForm-pdb_id')
+
+ return self.initial_dict.get(step, initial)
+
def get_template_names(self):
return [TEMPLATES[self.steps.current]]
- def get_form_instance(self, step):
- if self.steps.current == 'PDBForm':
- pk = self.storage.get_step_data('BibliographyForm').get('pk')
- return Bibliography.objects.get(pk=pk)
- if self.steps.current == 'ProteinForm':
- pks = self.storage.get_step_data('PDBForm').get('pks')
- print(Protein.objects.filter(id__in=pks))
- return Protein.objects.filter(id__in=pks)
-
- def process_step(self, form):
- """
- This method overrides the one used to postprocess the form data.
- The added code just sets the form model for use in later forms
- when appropriate
- """
- data = super(IppiWizard, self).process_step(form).copy()
- if self.steps.current == 'Bibliography':
- form.instance.autofill()
- if self.steps.current == 'Bibliography':
- form.instance.save()
- data['pk'] = form.instance.id
- if self.steps.current == 'PDBForm':
- pdb_ids = [form['pdb_id'] for form in form.cleaned_data]
- uniprot_ids = []
- protein_ids = []
- for pdb_id in pdb_ids:
- uniprot_ids += get_pdb_uniprot_mapping(pdb_id)
- for uniprot_id in uniprot_ids:
- try:
- p = Protein.objects.get(uniprot_id=uniprot_id)
- except Protein.DoesNotExist:
- p = Protein()
- p.uniprot_id = uniprot_ids[0]
- p.autofill()
- p.save()
- protein_ids.append(p.id)
- data['pks'] = protein_ids
- if self.steps.current=='ProteinDomainComplexTypeForm':
- data['complex_type']=data['ProteinDomainComplexTypeForm-complexType']
- data['complex_choice']=data['ProteinDomainComplexTypeForm-complexChoice']
- return data
-
def done(self, form_list, **kwargs):
- return render(self.request, '/admin-session/add.html', {
- 'form_data': [form.cleaned_data for form in form_list],
- })
+ return render(self.request, 'done.html', {
+ 'form_data': [form.cleaned_data for form in form_list],
+ })
+
def ppi_card(request, biblio_id):
try: