From c6213854c6fac8dffc65795341620f22138becef Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Herv=C3=A9=20=20MENAGER?= <herve.menager@pasteur.fr>
Date: Thu, 23 Mar 2017 21:34:39 +0100
Subject: [PATCH] retrieve info from Uniprot for Protein class
---
ippisite/ippidb/models.py | 13 +++++++++++--
1 file changed, 11 insertions(+), 2 deletions(-)
diff --git a/ippisite/ippidb/models.py b/ippisite/ippidb/models.py
index 326dcfbb..b02bf2f2 100644
--- a/ippisite/ippidb/models.py
+++ b/ippisite/ippidb/models.py
@@ -75,9 +75,18 @@ class Protein(models.Model):
molecular_functions = models.ManyToManyField(MolecularFunction)
def save(self, *args, **kwargs):
- info = get_epo_info(self.id_source)
+ info = get_uniprot_info(self.uniprot_id)
self.recommended_name_long = info['recommended_name']
- self.organism = info['organism']
+ self.gene_name = info['gene']
+ self.entry_name = info['entry_name']
+ try:
+ taxonomy = Taxonomy.objects.get(taxonomy_id=info['organism'])
+ except Taxonomy.DoesNotExist:
+ tax_info = get_taxonomy_info(info['organism'])
+ taxonomy = Taxonomy()
+ taxonomy.taxonomy_id = info['organism']
+ taxonomy.save()
+ self.organism = taxonomy
super(Protein, self).save(*args, **kwargs)
class Domain(models.Model):
--
GitLab