From caba9899ff00484e7fc9b53c66462ba944c6729b Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Herv=C3=A9=20=20MENAGER?= <herve.menager@pasteur.fr>
Date: Fri, 27 Jul 2018 08:58:01 +0200
Subject: [PATCH] convert canonical_smiles from CharField(500) to TextField
to think these could only be 500 chars long was a pipe dream...
Former-commit-id: a7b7445303b98f64de0edff49e623b9ba01fff9a
---
ippisite/db.sqlite3.REMOVED.git-id | 2 +-
.../migrations/0004_auto_20180727_0656.py | 35 +++++++++++++++++++
ippisite/ippidb/models.py | 16 ++++-----
3 files changed, 44 insertions(+), 9 deletions(-)
create mode 100644 ippisite/ippidb/migrations/0004_auto_20180727_0656.py
diff --git a/ippisite/db.sqlite3.REMOVED.git-id b/ippisite/db.sqlite3.REMOVED.git-id
index c1bdd067..b036b8e8 100644
--- a/ippisite/db.sqlite3.REMOVED.git-id
+++ b/ippisite/db.sqlite3.REMOVED.git-id
@@ -1 +1 @@
-3c03e4dd1b0b5391fa56e19cb7c4c3740ce690cd
\ No newline at end of file
+d24a740b4ee4b892f35e7e1471fec79142340ad3
\ No newline at end of file
diff --git a/ippisite/ippidb/migrations/0004_auto_20180727_0656.py b/ippisite/ippidb/migrations/0004_auto_20180727_0656.py
new file mode 100644
index 00000000..98ce6d06
--- /dev/null
+++ b/ippisite/ippidb/migrations/0004_auto_20180727_0656.py
@@ -0,0 +1,35 @@
+# -*- coding: utf-8 -*-
+# Generated by Django 1.11 on 2018-07-27 06:56
+from __future__ import unicode_literals
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+ dependencies = [
+ ('ippidb', '0003_auto_20180726_1755'),
+ ]
+
+ operations = [
+ migrations.AlterField(
+ model_name='compound',
+ name='canonical_smile',
+ field=models.TextField(unique=True, verbose_name='Canonical Smile'),
+ ),
+ migrations.AlterField(
+ model_name='mddrcompoundimport',
+ name='canonical_smile',
+ field=models.TextField(blank=True, null=True, verbose_name='Canonical Smile'),
+ ),
+ migrations.AlterField(
+ model_name='mddrsimilarity',
+ name='canonical_smile_ippidb',
+ field=models.TextField(blank=True, null=True, unique=True, verbose_name='Canonical Smile for IPPIDB compound'),
+ ),
+ migrations.AlterField(
+ model_name='mddrsimilarity',
+ name='canonical_smile_mddr',
+ field=models.TextField(blank=True, null=True, unique=True, verbose_name='Canonical Smile for MDDR Compound'),
+ ),
+ ]
diff --git a/ippisite/ippidb/models.py b/ippisite/ippidb/models.py
index 8d4c4aaa..0547a562 100644
--- a/ippisite/ippidb/models.py
+++ b/ippisite/ippidb/models.py
@@ -264,8 +264,8 @@ class PpiComplex(models.Model):
class Compound(models.Model):
- canonical_smile = models.CharField(
- 'Canonical Smile', unique=True, max_length=500)
+ canonical_smile = models.TextField(
+ 'Canonical Smile', unique=True)
is_macrocycle = models.BooleanField('Contains one or more macrocycles')
aromatic_ratio = models.DecimalField(
'Aromatic ratio', max_digits=3, decimal_places=2)
@@ -540,8 +540,8 @@ class MDDRCompoundImport(models.Model):
mddr_name = models.CharField('MDDR name', max_length=40)
dvpmt_phase = models.CharField(
'Development phase', max_length=20, choices=MDDR_DEVELOPMENT_PHASES)
- canonical_smile = models.CharField(
- 'Canonical Smile', max_length=500, blank=True, null=True)
+ canonical_smile = models.TextField(
+ 'Canonical Smile', blank=True, null=True)
# TODO index this table on canonical_smile
db_import_date = models.DateTimeField('MDDR release year/month')
activity_classes = models.ManyToManyField(MDDRActivityClass)
@@ -558,10 +558,10 @@ class MDDRCompoundImport(models.Model):
class MDDRSimilarity(models.Model):
- canonical_smile_ippidb = models.CharField(
- 'Canonical Smile for IPPIDB compound', max_length=500, unique=True, blank=True, null=True)
- canonical_smile_mddr = models.CharField(
- 'Canonical Smile for MDDR Compound', max_length=500, unique=True, blank=True, null=True)
+ canonical_smile_ippidb = models.TextField(
+ 'Canonical Smile for IPPIDB compound', unique=True, blank=True, null=True)
+ canonical_smile_mddr = models.TextField(
+ 'Canonical Smile for MDDR Compound', unique=True, blank=True, null=True)
tanimoto = models.DecimalField('Tanimoto', max_digits=6, decimal_places=5)
class Meta:
--
GitLab