From e7bb7b20e31292aaa3ba5a15d393815dc049ccaf Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Herv=C3=A9=20=20MENAGER?= <herve.menager@pasteur.fr>
Date: Wed, 13 Mar 2019 22:22:12 +0100
Subject: [PATCH] completely remove useless CompoundAction code in the import
script
fix #59
---
.../management/commands/import_v1_data.py | 24 -------------------
1 file changed, 24 deletions(-)
diff --git a/ippisite/ippidb/management/commands/import_v1_data.py b/ippisite/ippidb/management/commands/import_v1_data.py
index 38a2c920..0fa4d928 100644
--- a/ippisite/ippidb/management/commands/import_v1_data.py
+++ b/ippisite/ippidb/management/commands/import_v1_data.py
@@ -293,30 +293,6 @@ class PpiImportTask(IppiDBMySQLImportTask):
ppi_complex.complex = c
ppi_complex.cc_nb = 1
ppi_complex.save()
- if row[3] is not None:
- sql_ca_string = '''select distinct c.CanonicalSmile from cmpdAction as ca
- inner join compound as c on ca.IDCompound=c.IDCompound where ca.IDComplexeBound='''\
- + str(row[3])
- cursor_aux.execute(sql_ca_string)
- self.rows_aux = cursor_aux.fetchall()
- for row_aux in self.rows_aux:
- canonical_smile = row_aux[0]
- #TODO!!!!!!
- sql_bse_string = '''select CodePDB from bindingSiteEvidence where IDPPI=''' + str(ppi.id)
- cursor_aux2.execute(sql_bse_string)
- row_aux2 = cursor_aux2.fetchone()
- if row_aux2 is None:
- pdb_id_ca = None
- else:
- pdb_id_ca = row_aux2[0]
-# c = Compound.objects.get(canonical_smile=canonical_smile)
-# ca = CompoundAction()
-# ca.compound = c
-# ca.ppi = ppi
-# ca.activation_mode = 'U'
-# ca.nb_copy_compounds = 1
-# ca.pdb_id = pdb_id_ca
-# ca.save()
return ppi
def post_process(self):
--
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