Commits · 209-celery-issue · iPPIDB / ippidb-web

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23 Apr, 2020 5 commits
- remove the need to specify "protein bound construct" in Test step · 2af7683b
  Hervé MENAGER authored Apr 23, 2020
```
the value for the field is:
- automatically deducted if there is only one ProteinDomainBoundComplex
  in the PPI
- NULL otherwise

WIP on #204
```
  2af7683b
- remore protein_bound_construct from contribution E2E test data · 0e1b6ab0
  Hervé MENAGER authored Apr 23, 2020
  
  0e1b6ab0
- fix extra code copied by mistake in tests_contribute.py · 136e93d4
  Hervé MENAGER authored Apr 23, 2020
  
  136e93d4
- remove protein_bound_construct field from test data (part 2) · 252e7075
  Hervé MENAGER authored Apr 23, 2020
```
WIP on #204
```
  252e7075
- remove protein_bound_construct field from test data. · d8133113
  Hervé MENAGER authored Apr 23, 2020
```
WIP on #204
```
  d8133113
22 Apr, 2020 4 commits
- discard "Kd ratio" compound activities from "best activity" · 6f43989a
  Hervé MENAGER authored Apr 22, 2020
```
this complements work in a075f990
related to #204
```
  6f43989a
- Efficiency plot - Add caption box · dd172263
  Rachel TORCHET authored Apr 22, 2020
  
  dd172263
- Merge branch 'master' of gitlab.pasteur.fr:ippidb/ippidb-web · b03ff67d
  Rachel TORCHET authored Apr 22, 2020
  
  b03ff67d
- Compound page : Add caption for Physicochemical filter and radar chart · c38e1f80
  Rachel TORCHET authored Apr 22, 2020
  
  c38e1f80
21 Apr, 2020 9 commits
- add debug instruction to understand what happens on the server · 97f9141b
  Hervé MENAGER authored Apr 21, 2020
  
  97f9141b
- code gardening (make flake8/black happy) · 19204e23
  Hervé MENAGER authored Apr 21, 2020
  
  19204e23
- Merge branch 'master' of https://gitlab.pasteur.fr/ippidb/ippidb-web · 3a3021d3
  Hervé MENAGER authored Apr 21, 2020
  
  3a3021d3
- add Kd ratio activity to compound activity test types · a075f990
  Hervé MENAGER authored Apr 21, 2020
```
as discussed with @osperand following up on #204
```
  a075f990
- code gardening · 1d2b29eb
  Hervé MENAGER authored Apr 21, 2020
  
  1d2b29eb
- show ligand id control in compound form if xray data · ab393cd3
  Hervé MENAGER authored Apr 21, 2020
```
this is an additional fix for ligand issue raised in #204 and #208
```
  ab393cd3
- Update celeryd config to set task max life to 48hrs · 44e2ed15
  Hervé MENAGER authored Apr 21, 2020
  
  44e2ed15
- Merge branch 'master' of gitlab.pasteur.fr:ippidb/ippidb-web · cc84631c
  Rachel TORCHET authored Apr 21, 2020
  
  cc84631c
- contribute-detail page update · c5fa782c
  Rachel TORCHET authored Apr 21, 2020
  
  c5fa782c
20 Apr, 2020 1 commit
- add option to sort compounds by PPI Family · 21457ae3
  Hervé MENAGER authored Apr 20, 2020
```
FIX #11
```
  21457ae3
19 Apr, 2020 6 commits
- add E2E yaml test data for issue #208 · 798aa3b8
  Hervé MENAGER authored Apr 19, 2020
  
  798aa3b8
- add consistency tests to E2E contribution interface · 15a197bb
  Hervé MENAGER authored Apr 19, 2020
  
  15a197bb
- reactivate proposing a list of PPI families in wizard · 1827f588
  Hervé MENAGER authored Apr 19, 2020
```
as requested by @lchecaru in #208
```
  1827f588
- correct CellLine to not remove TestActivityDescription upon delete · 9a0b9aeb
  Hervé MENAGER authored Apr 19, 2020
  
  9a0b9aeb
- fix saving "cell line" information if test_type is cellular · 8b8ee8b8
  Hervé MENAGER authored Apr 19, 2020
```
- if test_type is "CELL", we DO need to keep the cell line name
- only create an entry in CellLine if name is not blank
```
  8b8ee8b8
- change labels for pIC50, pEC50 etc. to IC50, EC50 · c56d91b5
  Hervé MENAGER authored Apr 19, 2020
```
FIX #200
```
  c56d91b5
18 Apr, 2020 5 commits
- restructure and improve tests · 4f763df5
  Hervé MENAGER authored Apr 18, 2020
  
  4f763df5
- code gardening · 61a02845
  Hervé MENAGER authored Apr 18, 2020
  
  61a02845
- modify the format of the activity reported for Compounds · 5b37f71d
  Hervé MENAGER authored Apr 18, 2020
```
new format is XXXXX,XXXXXXXXXX
```
  5b37f71d
- show ligand_id if Xray data selected · c0814f35
  Hervé MENAGER authored Apr 18, 2020
```
problem raised in #204
```
  c0814f35
- code reformat · 589f4877
  Hervé MENAGER authored Apr 18, 2020
  
  589f4877
17 Apr, 2020 5 commits
- make sure we do not crash on best activity during compound validation · 016f6566
  Hervé MENAGER authored Apr 17, 2020
```
fix #207
```
  016f6566
- remove unused property from Compound: best_pXC50_activity · 271245df
  Hervé MENAGER authored Apr 17, 2020
```
(replaced by cached best_activity)
```
  271245df
- minor reformat · da82f21b
  Hervé MENAGER authored Apr 17, 2020
  
  da82f21b
- minor reformat · 16654dd9
  Hervé MENAGER authored Apr 17, 2020
  
  16654dd9
- make sure Compound-Drugbank similarities does not allow duplicates · 32066979
  Hervé MENAGER authored Apr 17, 2020
```
- add unique constraint in the model
- remove existing similarity entries before to recompute

FIX #206
```
  32066979
16 Apr, 2020 5 commits
- move all tests to a dedicated folder · 4a8b249d
  Hervé MENAGER authored Apr 16, 2020
  
  4a8b249d
- minor style correction · 452b747b
  Hervé MENAGER authored Apr 16, 2020
  
  452b747b
- change Compound's type from CharField to TextField · 46afb50b
  Hervé MENAGER authored Apr 16, 2020
```
WIP on #205
```
  46afb50b
- write full traceback in the job log in case of MonitorTask failure · 4869ddd3
  Hervé MENAGER authored Apr 16, 2020
```
WIP on #205
```
  4869ddd3
- avoid exceptions when updating jobs if "message" is not a string · 3e74f667
  Hervé MENAGER authored Apr 16, 2020
```
WIP on #205
```
  3e74f667