Commits · 4cebe0c478b963ca2389779b698b30a67891dccb · iPPIDB / ippidb-web

02 May, 2018 1 commit
- add PPI family field to PPIs. · 4cebe0c4
  Hervé MENAGER authored May 02, 2018
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Former-commit-id: a5b2d51710ea8e062168e7e40676d0c86cf7ec4a
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  4cebe0c4
11 Apr, 2018 3 commits

add model and template code for compound pharmacology tab · 5c7fd64c

Hervé MENAGER authored Apr 11, 2018

still missing:
- sort pXC50 with ki > kd > ic50 > ec50 rule
- add PPI families in the model (and migrate them)


Former-commit-id: 222c0792c744baa037d5c109337d865669e4fa1a

5c7fd64c

minor comments and style improvements · c7e0ad5b
Hervé MENAGER authored Apr 11, 2018
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Former-commit-id: a3a34d0f32125c4da18744b97da796a16d8e056f
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c7e0ad5b
compound best pXC50 activity is for all types of activity registered · d82ea146
Hervé MENAGER authored Apr 11, 2018
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and not only pIC50+pEC50 (discussed with @osperand)


Former-commit-id: b5e46f34952deba8ed94ecddee199e999f9940de
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d82ea146

08 Apr, 2018 3 commits
- filter LE-LLE biplot data for only pXC50 activity results · eebeef8d
  Hervé MENAGER authored Apr 08, 2018
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and try to take into account if no data for this activity


Former-commit-id: 62ae7b8832a9bd9e372ff59c43a6ef2dfcaa329f
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  eebeef8d
- add "compound target family" to the LE-LLE plot · ca80e1ec
  Hervé MENAGER authored Apr 08, 2018
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Former-commit-id: a8980972bc9fdf6728a1b910230b59734d4311ff
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  ca80e1ec
- precompute and store the LE-LLE biplot data in the database · 3e2b9dd3
  Hervé MENAGER authored Apr 08, 2018
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precompute with python manage lle_le


Former-commit-id: c831ad2782e66bdbf4127ee870d5748b89a67abe
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  3e2b9dd3
07 Apr, 2018 1 commit
- add computing of LE and LLE in Compound · 0880187d
  Hervé MENAGER authored Apr 07, 2018
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Former-commit-id: b1a17d4f65dc933c11891cee60d91e12334e41be
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  0880187d
04 Apr, 2018 1 commit
- started working on compound LE vs LLE biplot, WIP · a663f6d5
  Hervé MENAGER authored Apr 04, 2018
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Former-commit-id: 76a8d4129343edf8f59505cd3317ad37a2cde881
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  a663f6d5
03 Apr, 2018 1 commit
- add table for "Physicochemical filters" in compound page · 1384f36a
  Hervé MENAGER authored Apr 03, 2018
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Former-commit-id: 7cd557d92730d0d98533ebf3c5a434ac60cf796e
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  1384f36a
09 Mar, 2018 1 commit
- migrate compound PK results (fix #17) · 9b2b88fa
  Hervé MENAGER authored Mar 09, 2018
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Former-commit-id: f198b586ce9d22b1e60e2dfa294e061f24dfa076
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  9b2b88fa
08 Mar, 2018 3 commits
- migrate Compound cytotoxicity results (fix #16) · 13fb0c8d
  Hervé MENAGER authored Mar 08, 2018
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Former-commit-id: cf03962fb888e7a55f9339b784c83b754c46a5c1
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  13fb0c8d
- migrate Compound activity results (fix #15) · cf66a659
  Hervé MENAGER authored Mar 08, 2018
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Former-commit-id: 5a5f698c25d82c03c96cb49900bd47282946fe9c
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  cf66a659
- migrate TestPKDescription (fix #29) · e77216cc
  Hervé MENAGER authored Mar 08, 2018
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Former-commit-id: 1acca29b42cdc5370aeb1b0f13eb6a37f82e440f
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  e77216cc
07 Mar, 2018 1 commit
- change model for TestActivityDescription fol. conv. with @osperand · e2bc2c8a
  Hervé MENAGER authored Mar 07, 2018
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WIP for #27


Former-commit-id: 0a396477406508e1634db8beee067d8885510b1e
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  e2bc2c8a
10 Feb, 2018 2 commits

continue working on compound query interface (#43), WIP · c280cccc

Hervé MENAGER authored Feb 10, 2018

- three visualization modes now
- most of the requested primary information is there


Former-commit-id: 9d5310f273011035e53643d4baf153d4769b6ca8

c280cccc

new designs for compound query page, WIP · ac3d82b8
Hervé MENAGER authored Feb 10, 2018
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see #43


Former-commit-id: 6863d32646dcfe64d3ad51c428dd28c6358665c4
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ac3d82b8

06 Dec, 2017 1 commit
- add select on bound complex to compounds list · adb7bfb9
  Hervé MENAGER authored Dec 06, 2017
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Former-commit-id: 4519106f57e981f615014827ca5f2f841cc2f477
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  adb7bfb9
04 Dec, 2017 1 commit
- add models.CASCADE as on_delete in ForeignKey fields of models · 715b9e7d
  Hervé MENAGER authored Dec 04, 2017
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Former-commit-id: 3c15969fda531d1b7128c5a34395f34a008e3bad
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  715b9e7d
10 Nov, 2017 1 commit
- modifications to CompoundAction model · 1e933a50
  Hervé MENAGER authored Nov 10, 2017
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Former-commit-id: 4678a1c73aee4b4f1348db6ab23387076523b8b9
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  1e933a50
08 Nov, 2017 1 commit
- compounds list, WIP · 0f39aece
  Hervé MENAGER authored Nov 08, 2017
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Former-commit-id: adeba92bffdb7d35210e3ac43a7247352d04dd47
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  0f39aece
07 Nov, 2017 2 commits
- add new "name" property for the PPI based on proteins in complexes · 138172fb
  Hervé MENAGER authored Nov 07, 2017
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Former-commit-id: cac6d4ec52af22686f1f100b4b6662ebd5b7c2ee
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  138172fb
- save protein short name from uniprot web service · 550edccc
  Hervé MENAGER authored Nov 07, 2017
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Former-commit-id: 752018e923beb01a6697e913769c1402813bab3d
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  550edccc
14 Sep, 2017 2 commits
- autopep8 code · c5fb2869
  Hervé MENAGER authored Sep 14, 2017
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Former-commit-id: e4a2b89495247a4954b8046c445d85df5888f0b5
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  c5fb2869
- correct small error in models code · a0c493d7
  Hervé MENAGER authored Sep 14, 2017
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Former-commit-id: 86cbfb7ecd83e8560695d670c9ed6cf9c67ebfe4
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  a0c493d7
16 Jun, 2017 3 commits
- syntax correction · 072502fd
  Hervé MENAGER authored Jun 16, 2017
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Former-commit-id: ea9d393c173328aebfc050cb85a5ebb783decbd8
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  072502fd
- remove debug print · 53ea44f6
  Hervé MENAGER authored Jun 16, 2017
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Former-commit-id: 09fdc261b15dc7d6c05dcd811ee28de9f6bd1226
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  53ea44f6
- correct AutoFillableModel save() method · 7a90f0c2
  Hervé MENAGER authored Jun 16, 2017
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Former-commit-id: 12c1287962b7745bd096b3988ea9d663cdb6e050
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  7a90f0c2
15 Jun, 2017 1 commit
- update form buttons · 88d26fdf
  Rachel TORCHET authored Jun 15, 2017
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Former-commit-id: 6996fe071ef5690df5958c6a3b26c3031096755c
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  88d26fdf
13 Jun, 2017 1 commit
- tiny changes in form text placeholder · 149988fe
  Rachel TORCHET authored Jun 13, 2017
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Former-commit-id: 05e17f3c7cfc33c143b0dbea1feab83240b12b17
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  149988fe
12 Jun, 2017 2 commits
- refactor model data ws retrieval in AutoFillableModel · 40a2ecaa
  Hervé MENAGER authored Jun 12, 2017
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Former-commit-id: 6ce2b8f1ac3abdb736089b328505f7ed0992fa61
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  40a2ecaa
- set str representation for MDDRCompoundImport model · fce2cbad
  Hervé MENAGER authored Jun 12, 2017
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Former-commit-id: c0e7a23d6eecbd553815db5d4d25a2ad4046aae4
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  fce2cbad
23 May, 2017 5 commits
- set text description for bibliography objects · f5769f95
  Hervé MENAGER authored May 23, 2017
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Former-commit-id: 597653983920124084343ec32ccc26a13cef7067
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  f5769f95
- set string description for CellLine objects · 28581c3f
  Hervé MENAGER authored May 23, 2017
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Former-commit-id: 439a5ae1d63237da9601299acb377972a55cdb3e
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  28581c3f
- migrate TestActivityDescription and CellLine · 1b6dcfbd
  Hervé MENAGER authored May 23, 2017
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- CellLine is an optional field in TestActivityDescription
- fixes #12, fixes #27


Former-commit-id: 0d2cf5154164153b3047befd87a46a1b6885b60c
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  1b6dcfbd
- administration modes are an enumerated type, not a external table. · 84a8469a
  Hervé MENAGER authored May 23, 2017
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indirectly fixes #10


Former-commit-id: 752a49eea7d413544f8ad74478924847edb1c959
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  84a8469a
- add imported MDDR and define MDDR activity classes as an enum type · 8efe9f64
  Hervé MENAGER authored May 23, 2017
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closes #40


Former-commit-id: 7d5595a4c6209b146a27f09a8151d6734b9d9660
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  8efe9f64
22 May, 2017 2 commits
- refine MDDR model, and implement MDDR import · 49b17318
  Hervé MENAGER authored May 22, 2017
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fixes #21
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  49b17318
- remodel MDDR activity classes through a ManyToMany field · d7519b44
  Hervé MENAGER authored May 22, 2017
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fixes #39
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  d7519b44
19 May, 2017 1 commit
- adjust Compound model and finish the migration for it · fb93eaf0
  Hervé MENAGER authored May 19, 2017
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fixes #18
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  fb93eaf0