Commits · 7cb76db4185f0a1ac2c034ab62841117caa239e6 · iPPIDB / ippidb-web

02 Dec, 2018 1 commit
- improve code docstrings and Sphinx documentation · 7cb76db4
  Hervé MENAGER authored Dec 02, 2018
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Former-commit-id: afcd004395586bedc7b56193c0a63167346bd2f5
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  7cb76db4
28 Nov, 2018 1 commit
- First draft of iPPI-DB documentation · b5ab7368
  Hervé MENAGER authored Nov 28, 2018
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Former-commit-id: c5cf57b8237ac0ecb3e78c97f44ff3d333379b75
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  b5ab7368
26 Nov, 2018 3 commits
- correct Drugbank similarity computation settings · 66bc1df8
  Hervé MENAGER authored Nov 26, 2018
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Former-commit-id: be2fc631b7f308072897e5de8dc097217fdfdc47
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  66bc1df8
- set a configuration for fingerprints used for drugbank similarity · 001962ad
  Hervé MENAGER authored Nov 26, 2018
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see #96


Former-commit-id: f15dcfbe2583970f422c7b3c8f3536ea911a37ab
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  001962ad
- DB with FP4-computed fingerprints · a0a78b94
  Hervé MENAGER authored Nov 26, 2018
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Former-commit-id: f16908fb8db6625fca077d660bcf69d40273b5f9
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  a0a78b94
25 Nov, 2018 4 commits

modify unit tests according to ... · bc78027f

Hervé MENAGER authored Nov 25, 2018

modify unit tests according to cd607709 [formerly 7f0a26180c2fb18638e0293c5ecbc123b4a9271f]


Former-commit-id: 96be0abb7a66b2f590a093efb660a7d89f985b90

bc78027f

fix drugbank similarities computation · cd607709
Hervé MENAGER authored Nov 25, 2018
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see #96


Former-commit-id: 7f0a26180c2fb18638e0293c5ecbc123b4a9271f
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cd607709
display compound name in biblio in compound pharma tab · 400877c3
Hervé MENAGER authored Nov 25, 2018
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fix #112


Former-commit-id: 796b90220568670e837797c7fedb9123e424cb44
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400877c3

try removing useless param in lineinfile · c2e55665

Hervé MENAGER authored Nov 25, 2018

parameter "regexp" is useless (or should be) for BOF and EOF

Former-commit-id: 28d3fc25e832c1c8055bac57e1ba22a7b8d58614

c2e55665

24 Nov, 2018 3 commits

try another order in httpd.conf ansible inserts · 468b1911

Hervé MENAGER authored Nov 24, 2018

if performing insertafter then insertbefore, ansible does not perform 2nd insert correctly, probably due to something like https://github.com/ansible/ansible/issues/38219

Former-commit-id: 491848e5523deb9052ad545be2b10387a097f7a8

468b1911

ansible deploy file correction · 577f0813
Hervé MENAGER authored Nov 24, 2018
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(still on #115)

Former-commit-id: 985f99177fe0dc99b3cc16ff9e2693b59103eb94
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577f0813

set a higher size limit for GET URLs · f5d4a674

Hervé MENAGER authored Nov 24, 2018

this should solve the problem reported in #115

Former-commit-id: 465d0b971cd4987c0ab677c2401f1ef4bd768b18

f5d4a674

23 Nov, 2018 2 commits
- celery ippidb update · 217af39d
  Fabien MAREUIL authored Nov 23, 2018
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Former-commit-id: 2f5daa6d22fc125101c802ee3bce65f112ff0b2a
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  217af39d
- finalize drugbank compounds similarity computation · d27302bb
  Hervé MENAGER authored Nov 23, 2018
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Former-commit-id: 5f1bf6c840c68c4dbcc059f24b102d10efed5579
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  d27302bb
22 Nov, 2018 3 commits
- add bootstrap slider distributed js and css files · 72cd14f3
  Hervé MENAGER authored Nov 22, 2018
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Former-commit-id: d45b21f20933cbc726de41343d3e6fe91f21e59e
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  72cd14f3
- correct display problem for similar drugbank compounds in compound card · b3f653ec
  Hervé MENAGER authored Nov 22, 2018
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Former-commit-id: 5fe439b20c1b0cd5b3a39451dd9c6f21565f91a0
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  b3f653ec
- update smilesdrawer js component · 202d8949
  Hervé MENAGER authored Nov 22, 2018
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Former-commit-id: bc94749ae92391ca302d061e0218a52b76270ee0
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  202d8949
20 Nov, 2018 3 commits
- first draft to show similar drugbank compounds · ba83798f
  Hervé MENAGER authored Nov 20, 2018
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WIP on #96


Former-commit-id: ae2cb02a8bd669efa51c98bbf4d759cd78519434
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  ba83798f
- uncomment code from the import-drugbank command · cd7afec5
  Hervé MENAGER authored Nov 20, 2018
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see #96


Former-commit-id: d6eb71d8ac8a82292fb0b8fd591772440a7ac1f5
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  cd7afec5
- add Drugbank compound similarity computation · 0a597cbb
  Hervé MENAGER authored Nov 20, 2018
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Former-commit-id: 528aac3f93450a16ae1fb8cc56dda0cf0080afb2
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  0a597cbb
19 Nov, 2018 5 commits
- add drugbank model code and import command · 41fa613a
  Hervé MENAGER authored Nov 19, 2018
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see #96 and #113


Former-commit-id: 18ff7229eb1ae0c806a4da4bc49c64b6a1bde99e
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  41fa613a
- remove MDDR-related models and references · d17fb125
  Hervé MENAGER authored Nov 19, 2018
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see #96


Former-commit-id: 90abafc4f53301e38e9fac6171416587aba94288
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  d17fb125
- remove unused "biblio" templates · 370a259f
  Hervé MENAGER authored Nov 19, 2018
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Former-commit-id: cb77e25a11f95282320971b9fb61c358b4aaca91
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  370a259f
- remove MDDR phase from compounds list · 4cf22dca
  Hervé MENAGER authored Nov 19, 2018
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because MDDR is not in iPPI-DB anymore (see #96)


Former-commit-id: e68c8dfcff2dcdea8a76689fed23416a93216b85
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  4cf22dca
- correct radar chart values · 40ff2076
  Hervé MENAGER authored Nov 19, 2018
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fix #73


Former-commit-id: bbf2f3cdd029f706e3561b41c435f29851ab39a0
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  40ff2076
05 Nov, 2018 1 commit

add the misssing compoundactions in the initial db · a25721a6

Hervé MENAGER authored Nov 05, 2018

these are the compound actions missing from the mysql DB,
and mentionned in #95.
fix ##95


Former-commit-id: 68ddea67a27903bf4b0d797179e21aa6b8b1803d

a25721a6

27 Oct, 2018 1 commit
- link biblio with pubmed for PMIDs and WIPO for patents · ea2c6b7d
  Hervé MENAGER authored Oct 27, 2018
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fix #107


Former-commit-id: b842ee4abf9306f5db1639e9d9b101c183bfe03b
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  ea2c6b7d
26 Oct, 2018 3 commits

correct number of publications in Compounds query · 6f74b8cf
Hervé MENAGER authored Oct 26, 2018
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fix #106


Former-commit-id: ded88dd2ab20e4095bb869fd1f46b6d409f7a8fd
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6f74b8cf
correct bad formatting in compound bibliography names · b6b75e90
Hervé MENAGER authored Oct 26, 2018
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fix #109


Former-commit-id: b862044b1273cfe656503ee9964b43860498d714
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b6b75e90

create a new patent retrieval function (Google URL) · a503a3d3

Hervé MENAGER authored Oct 26, 2018

1- the old RIS url is not functional anymore, so need to
   parse HTML...
2- require BeautifulSoup to do it
3- the authors list is properly comma-joined this time

fix #110


Former-commit-id: e05195236de8b2f1c44fc216900b5257b01c0b39

a503a3d3

24 Oct, 2018 4 commits

add all the files forgotten in the previous commit · ce6b67f1

Hervé MENAGER authored Oct 24, 2018

(previous: f9b2c669 [formerly a108a6cf9ca61ae58c2f90dcf0c58e7b11875171])


Former-commit-id: 66283e0289a162acb441f6a25ae0f3f87c716dff

ce6b67f1

add external links in a new "compound tab" for the compound card · f9b2c669
Hervé MENAGER authored Oct 24, 2018
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fix #98


Former-commit-id: a108a6cf9ca61ae58c2f90dcf0c58e7b11875171
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f9b2c669

fix the broken table view · b748664c

Hervé MENAGER authored Oct 24, 2018

the table view was broken after renaming CompoundAction.pdb_id to
CompoundAction.ligand_id (see #105 and 15d01400). This should fix it.

Former-commit-id: 64511739b98e4b23b7104a0a1b19842b2520d3d2

b748664c

set ordering of compounds to ID · da051084

Hervé MENAGER authored Oct 24, 2018

to solve the problem mentioned by @osperand in #95


Former-commit-id: 1dd831faf2409f485309234f46fffc4a13ace043

da051084

23 Oct, 2018 2 commits

Merge branch 'master' of https://gitlab.pasteur.fr/hub/iPPIDB · 48334718
Hervé MENAGER authored Oct 23, 2018
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Former-commit-id: cf8280c35a74754ab916bb8a244c5606779a4c96
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48334718

multiple database and model adjustments · ed144d21

Hervé MENAGER authored Oct 23, 2018

- Set string representation of compound to show compound ID
  (fix #102)
- Set PPI string representation to PPI ID - PPI name
  (fix #103)
- Set string representation of CompoundAction to "Compound ID"
  on "PPI" (fix #104)
- PDB ID in CompoundAction is actually PDB ligand ID
  (fix #105)


Former-commit-id: f91d63f3a9091f6da14673c0eb9015ffcfc5b087

ed144d21

19 Oct, 2018 2 commits
- Merge branch 'master' of https://gitlab.pasteur.fr/hub/iPPIDB · 5f28f803
  Rachel TORCHET authored Oct 19, 2018
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Former-commit-id: d45cc3365561a47e9f22875801b0c84b82346c8c
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  5f28f803
- Add Empty form to TestsForm step · 4eaf8961
  Rachel TORCHET authored Oct 19, 2018
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Former-commit-id: fc45d50aa3ed6c9407d47b673e00e36e5c14e16c
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  4eaf8961
14 Oct, 2018 2 commits
- fix layout problem for some compounds in the scatter plots · e2b6ed50
  Hervé MENAGER authored Oct 14, 2018
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fix #99


Former-commit-id: ec292fa624347b8a78e2e6c780a694ae40eeebf1
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  e2b6ed50
- Merge branch 'master' of https://gitlab.pasteur.fr/hub/iPPIDB · 0932056a
  Hervé MENAGER authored Oct 14, 2018
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Former-commit-id: cc6923aa38c039ce2b467ec527c317b5691633a4
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  0932056a