Commits · celery · iPPIDB / ippidb-web

13 Jan, 2020 1 commit
- deploy celery with ansible, WIP · 4b3c5074
  Hervé MENAGER authored Jan 13, 2020
```
WIP on #174 and #175
```
  4b3c5074
09 Jan, 2020 7 commits
- add missing Galaxy settings variable · dbebbef7
  Hervé MENAGER authored Jan 09, 2020
  
  dbebbef7
- black-format some celery code · 8b524aed
  Hervé MENAGER authored Jan 09, 2020
```
WIP on #174 and #175
```
  8b524aed
- run redis as a service during tests · d596f367
  Hervé MENAGER authored Jan 09, 2020
```
WIP on #174 and #175
```
  d596f367
- remove unused imports from admin module · 65cc1f83
  Hervé MENAGER authored Jan 09, 2020
```
WIP on #174 and #175
```
  65cc1f83
- install and start/stop redis for celery in test step · 07dd5661
  Hervé MENAGER authored Jan 09, 2020
```
WIP on #174 and #175
```
  07dd5661
- add celery requirement · 2be1514d
  Hervé MENAGER authored Jan 09, 2020
```
WIP on #174 #175
```
  2be1514d
- add code to run compound validation task in celery · bf0e7109
  Hervé MENAGER authored Jan 09, 2020
```
WIP on #174
this runs on a set of selected compounds:
- compute compound properties
- cache compound properties
- compute drugbank similarity
- validate the compound(s)
- compute LE-LLE and PCA plots
```
  bf0e7109
06 Jan, 2020 2 commits
- display correctly link to RCSB PDB ligand if relevant · 42608eb6
  Hervé MENAGER authored Jan 06, 2020
```
fix #57
```
  42608eb6
- black formatting · 07630c09
  Hervé MENAGER authored Jan 06, 2020
  
  07630c09
03 Jan, 2020 9 commits
- add a custom action in Compound to compute compound properties · 422c5729
  Hervé MENAGER authored Jan 03, 2020
  
  422c5729
- improve robustness of cache_compound_properties · 33049388
  Hervé MENAGER authored Jan 03, 2020
```
handle undefined PPI family name
```
  33049388
- improve robustness of compute_compound_properties · 854ec0e5
  Hervé MENAGER authored Jan 03, 2020
```
by handling undefined property values in Compound model
```
  854ec0e5
- correct code style in admin module · 3cfdf03b
  Hervé MENAGER authored Jan 03, 2020
  
  3cfdf03b
- add actions "cache properties" and "validate" to compound · 29eaab95
  Hervé MENAGER authored Jan 03, 2020
  
  29eaab95
- Compound.is_validated is now a boolean method · 3774f726
  Hervé MENAGER authored Jan 03, 2020
```
to enable displaying it as icons in the admin interface
```
  3774f726
- correct search fields for contributions · 61cc2eac
  Hervé MENAGER authored Jan 03, 2020
  
  61cc2eac
- use local bootstrap JS and CSS in admin interface · 3af7a8b4
  Hervé MENAGER authored Jan 03, 2020
  
  3af7a8b4
- remove obsolete FIXME comment · 8bddcec2
  Hervé MENAGER authored Jan 03, 2020
  
  8bddcec2
02 Jan, 2020 5 commits
- black pass on admin module · ca3a5b0e
  Hervé MENAGER authored Jan 02, 2020
  
  ca3a5b0e
- rename admin classes to avoid class name collisions · 2004298b
  Hervé MENAGER authored Jan 02, 2020
```
bad things happening like in
https://gitlab.pasteur.fr/ippidb/ippidb-web/-/jobs/46983
```
  2004298b
- improve displaying contributions in admin interface · d8a007cb
  Hervé MENAGER authored Jan 02, 2020
  
  d8a007cb
- black pass on admin.py · 35fbc5b0
  Hervé MENAGER authored Jan 02, 2020
  
  35fbc5b0
- use font-awesome from the local assets · 5f42405f
  Hervé MENAGER authored Jan 02, 2020
```
had to update the icon, as external-link is now pro-only
```
  5f42405f
27 Dec, 2019 3 commits
- add screenshots for GitHub allauth conf documentation · 64f16909
  Hervé MENAGER authored Dec 27, 2019
  
  64f16909
- add documentation for GitHub allauth configuration · 9803b328
  Hervé MENAGER authored Dec 27, 2019
```
related to #58
```
  9803b328
- Add documentation for ORCID authentication conf · ae5d9671
  Hervé MENAGER authored Dec 27, 2019
```
should facilitate solving #58 in the future
```
  ae5d9671
26 Dec, 2019 13 commits
- reformatted tests.py with black · 1ae89da2
  Hervé MENAGER authored Dec 26, 2019
  
  1ae89da2
- correct the behaviour of Compound.is_validated property · 2de64b19
  Hervé MENAGER authored Dec 26, 2019
```
and add unit tests for it
```
  2de64b19
- remove debug prints · f9c80cf4
  Hervé MENAGER authored Dec 26, 2019
  
  f9c80cf4
- firwalld open port · 401437ca
  Fabien MAREUIL authored Dec 20, 2019 and Hervé MENAGER committed Dec 26, 2019
  
  401437ca
- template location bug fix · e056085a
  Fabien MAREUIL authored Dec 20, 2019 and Hervé MENAGER committed Dec 26, 2019
  
  e056085a
- path to template · 99287ba3
  Fabien MAREUIL authored Dec 20, 2019 and Hervé MENAGER committed Dec 26, 2019
  
  99287ba3
- delegate template to localhost · 3c3b402b
  Fabien MAREUIL authored Dec 20, 2019 and Hervé MENAGER committed Dec 26, 2019
  
  3c3b402b
- need template for ippidb-web.service · 59cf3695
  Fabien MAREUIL authored Dec 20, 2019 and Hervé MENAGER committed Dec 26, 2019
  
  59cf3695
- add branch for checkout · 2fca0706
  Fabien MAREUIL authored Dec 20, 2019 and Hervé MENAGER committed Dec 26, 2019
  
  2fca0706
- bug fix: set service start with dynamic port · 92d1ba32
  Fabien MAREUIL authored Dec 20, 2019 and Hervé MENAGER committed Dec 26, 2019
  
  92d1ba32
- include only validated compounds in LE-LLE and PCA computations · da169664
  Hervé MENAGER authored Dec 26, 2019
```
WIP on #68
```
  da169664
- fix bug introduced by removing "validated" from CompoundManager · 53128da8
  Hervé MENAGER authored Dec 26, 2019
```
bug introduced in 0ab38431 and
visible here: https://gitlab.pasteur.fr/ippidb/ippidb-web/-/jobs/46382
WIP on #68
```
  53128da8
- control compound visibility in query mode · 0ab38431
  Hervé MENAGER authored Dec 26, 2019
```
compounds are visible only if validated or if the user is the creator
or an admin.
WIP on #67
```
  0ab38431