ippidb-web merge requestshttps://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests2023-08-21T15:48:13+02:00https://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests/46use bullseye2023-08-21T15:48:13+02:00Bryan BRANCOTTEuse bullseyehttps://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests/45Async near cavities2022-06-29T17:58:44+02:00Bryan BRANCOTTEAsync near cavitiesBryan BRANCOTTEBryan BRANCOTTEhttps://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests/44use a single container as web-container subsume celery-container2022-06-17T15:33:47+02:00Bryan BRANCOTTEuse a single container as web-container subsume celery-containerBryan BRANCOTTEBryan BRANCOTTEhttps://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests/43K8S deployments of release branche, and other updates2023-08-18T15:47:33+02:00Bryan BRANCOTTEK8S deployments of release branche, and other updatesBryan BRANCOTTEBryan BRANCOTTEhttps://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests/42build the doc2022-06-17T10:00:06+02:00Bryan BRANCOTTEbuild the docBryan BRANCOTTEBryan BRANCOTTEhttps://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests/41return the coverage to gitlab2022-06-15T17:00:00+02:00Bryan BRANCOTTEreturn the coverage to gitlabBryan BRANCOTTEBryan BRANCOTTEhttps://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests/40Use zolando2022-06-15T12:45:15+02:00Bryan BRANCOTTEUse zolandoBryan BRANCOTTEBryan BRANCOTTEhttps://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests/39remove dependencies2022-03-17T16:48:40+01:00Bryan BRANCOTTEremove dependenciesBryan BRANCOTTEBryan BRANCOTTEhttps://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests/38Dockerize app, and k8s2022-06-16T13:54:26+02:00Bryan BRANCOTTEDockerize app, and k8sreduce lib installed, collect static during build
* keep app and test related libs but remove sphinx and django-extensions related dependencies.
* remove apache2-dev
* collect static, and get ready to copy it on startup if needed t...reduce lib installed, collect static during build
* keep app and test related libs but remove sphinx and django-extensions related dependencies.
* remove apache2-dev
* collect static, and get ready to copy it on startup if needed to be serve by another container
* gunicorn only reload when used in docker-compose
* none root user
* run migration on startup
* copy static files to $STATIC_ROOT_ON_STARTUP_COPY when mounted
* add helm chart
* use PostgreSQL from zolando
Closes #271
Closes #272Bryan BRANCOTTEBryan BRANCOTTEhttps://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests/37provide email as recommended by Bioservice2022-03-15T14:07:50+01:00Bryan BRANCOTTEprovide email as recommended by BioserviceBryan BRANCOTTEBryan BRANCOTTEhttps://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests/36Master2022-03-14T14:59:51+01:00Hervé MENAGERMasterhttps://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests/35migrate iPPI-DB to Django 4.02022-03-14T17:28:03+01:00Bryan BRANCOTTEmigrate iPPI-DB to Django 4.0- fix a few problems due to Django upgrades
- using an expression to sort a list view: F('-tanimoto')->F('-tanimoto')
- all calls to translation calls ugettext*** replaced with gettext**
- moved admin site config to a separate modu...- fix a few problems due to Django upgrades
- using an expression to sort a list view: F('-tanimoto')->F('-tanimoto')
- all calls to translation calls ugettext*** replaced with gettext**
- moved admin site config to a separate module
- forgotten migration added
- dev environment now uses docker-compose
- delete ansible deployment code now obsoleteHervé MENAGERHervé MENAGERhttps://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests/34freeze psycopg2-binary to 2.82021-10-04T11:43:39+02:00Hervé MENAGERfreeze psycopg2-binary to 2.8for the sake of compatibility with Django 2.2for the sake of compatibility with Django 2.2https://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests/33Master2021-10-04T10:25:26+02:00Hervé MENAGERMaster- allow API search by code (245b41b37f45a0dc2c34ef206faec7d35501eabb)
- add Inception logo (90af7434f09b7a7085bcfff17d1732057bd531fd_
- correct deployment to install postgresql development headers (2a7590c747af932100ea3a3b5fa958b252109552)- allow API search by code (245b41b37f45a0dc2c34ef206faec7d35501eabb)
- add Inception logo (90af7434f09b7a7085bcfff17d1732057bd531fd_
- correct deployment to install postgresql development headers (2a7590c747af932100ea3a3b5fa958b252109552)https://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests/32Prepare for v1.1.32021-04-13T20:18:53+02:00Fabien MAREUILPrepare for v1.1.3Bug fix:
- fix pip version, requests-cache==0.5.2 and chembl_webresource_client==0.10.2Bug fix:
- fix pip version, requests-cache==0.5.2 and chembl_webresource_client==0.10.2Fabien MAREUILFabien MAREUILhttps://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests/31Prepare for v1.1.22021-04-13T18:27:51+02:00Fabien MAREUILPrepare for v1.1.2Bug fix:
- ascii error during sphinx process, set LC_CTYPE environment variable to en_US.UTF-8
Update:
- add chain id in json response from api requestBug fix:
- ascii error during sphinx process, set LC_CTYPE environment variable to en_US.UTF-8
Update:
- add chain id in json response from api requestFabien MAREUILFabien MAREUILhttps://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests/30Prepare for v1.1.12021-03-30T17:47:27+02:00Fabien MAREUILPrepare for v1.1.1Upgrade user interface
- Add research button from pockets to network
- Add help sections with tooltip
- Correct texts
- Add pocket pages into homepageUpgrade user interface
- Add research button from pockets to network
- Add help sections with tooltip
- Correct texts
- Add pocket pages into homepagehttps://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests/29Prepare for v1.1.02021-02-12T10:42:47+01:00Hervé MENAGERPrepare for v1.1.0Add iPPI-DB target-centric mode:
- add research and visualization for detected cavities
- add explore mode for PPI pocketome
This new version includes new DB models to store the target-centric information.Add iPPI-DB target-centric mode:
- add research and visualization for detected cavities
- add explore mode for PPI pocketome
This new version includes new DB models to store the target-centric information.https://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests/28prepare for v1.0.82021-01-28T19:21:01+01:00Hervé MENAGERprepare for v1.0.8Add reference to the iPPI-DB paper (https://doi.org/10.1093/bioinformatics/btaa1091)Add reference to the iPPI-DB paper (https://doi.org/10.1093/bioinformatics/btaa1091)https://gitlab.pasteur.fr/ippidb/ippidb-web/-/merge_requests/27prepare for v1.0.7 continued part 22020-12-25T13:53:09+01:00Hervé MENAGERprepare for v1.0.7 continued part 2fix bioschemas syntax for compound card
we now generate all of bioschemas json from the model.
also related to #267 and #268.fix bioschemas syntax for compound card
we now generate all of bioschemas json from the model.
also related to #267 and #268.