diff --git a/scripts/paris/run-maestro.sh b/scripts/paris/run-maestro.sh deleted file mode 100755 index 62d2df55bf15c37adf1134d1fc1698b0f0e67c56..0000000000000000000000000000000000000000 --- a/scripts/paris/run-maestro.sh +++ /dev/null @@ -1,9 +0,0 @@ -#!/bin/sh - -module load Python/3.8.1 -module load snakemake - -mkdir -p slurmout - -sbatch --job-name "PARIS" snakemake --configfile config.yaml --jobs 15000 - diff --git a/scripts/paris/run-maestro_slurm.sh b/scripts/paris/run-maestro_slurm.sh deleted file mode 100755 index 5352b17d22e2eee524d890944c3115512ba09af4..0000000000000000000000000000000000000000 --- a/scripts/paris/run-maestro_slurm.sh +++ /dev/null @@ -1,24 +0,0 @@ -#!/bin/sh - -runs=5000 - -#SBATCH --natsks=15000 -#SBATCH --cpu-per-task=1 - -mkdir -p logs - -FRICTIONLESSER="../../release/app/frictionlesser" - -for size in 10 20 30; do - mkdir -p signature_of_${size}-genes -done - - -for seed in $(seq $runs); do - for size in 10 20 30; do - srun --quiet --job-name z${size}_s${seed} --mem 16G --cpus-per-task=1 --partition common --qos normal --output signature_of_${size}-genes/signature_${seed} --error logs/%j.log ${FRICTIONLESSER} --ranks=ranks.tsv --cache-transcriptome=cache/trans.cache.dat --cache-size=cache/size_${size}.cache.dat --ngenes=${size} --seed=${seed} & - done -done -# wait for all the steps to end before terminating the sbatch script -wait -