From c7d720fa31c50a2d1567107ef843de6ff9f30bbd Mon Sep 17 00:00:00 2001
From: Johann Dreo <johann.dreo@pasteur.fr>
Date: Mon, 27 Mar 2023 14:58:17 +0200
Subject: [PATCH] remove run-maestro scripts
---
scripts/paris/run-maestro.sh | 9 ---------
scripts/paris/run-maestro_slurm.sh | 24 ------------------------
2 files changed, 33 deletions(-)
delete mode 100755 scripts/paris/run-maestro.sh
delete mode 100755 scripts/paris/run-maestro_slurm.sh
diff --git a/scripts/paris/run-maestro.sh b/scripts/paris/run-maestro.sh
deleted file mode 100755
index 62d2df5..0000000
--- a/scripts/paris/run-maestro.sh
+++ /dev/null
@@ -1,9 +0,0 @@
-#!/bin/sh
-
-module load Python/3.8.1
-module load snakemake
-
-mkdir -p slurmout
-
-sbatch --job-name "PARIS" snakemake --configfile config.yaml --jobs 15000
-
diff --git a/scripts/paris/run-maestro_slurm.sh b/scripts/paris/run-maestro_slurm.sh
deleted file mode 100755
index 5352b17..0000000
--- a/scripts/paris/run-maestro_slurm.sh
+++ /dev/null
@@ -1,24 +0,0 @@
-#!/bin/sh
-
-runs=5000
-
-#SBATCH --natsks=15000
-#SBATCH --cpu-per-task=1
-
-mkdir -p logs
-
-FRICTIONLESSER="../../release/app/frictionlesser"
-
-for size in 10 20 30; do
- mkdir -p signature_of_${size}-genes
-done
-
-
-for seed in $(seq $runs); do
- for size in 10 20 30; do
- srun --quiet --job-name z${size}_s${seed} --mem 16G --cpus-per-task=1 --partition common --qos normal --output signature_of_${size}-genes/signature_${seed} --error logs/%j.log ${FRICTIONLESSER} --ranks=ranks.tsv --cache-transcriptome=cache/trans.cache.dat --cache-size=cache/size_${size}.cache.dat --ngenes=${size} --seed=${seed} &
- done
-done
-# wait for all the steps to end before terminating the sbatch script
-wait
-
--
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