diff --git a/README.md b/README.md index 774c49c1d08a7e76f3341743f50bd910b91f5efa..435c6440a60c906f82efa6ed31e5ed805475e117 100644 --- a/README.md +++ b/README.md @@ -24,6 +24,11 @@ chmod +x wGRR* ``` ## Usage +### Example +```bash +./wGRR -i example/test_0.prt -o TEST0 +``` + ### On a local machine ```bash ./wGRR -i $fasta [-p $mmseqs2_path -o $output_prefix -t $threads -a $comparisons -T -f] diff --git a/wGRR b/wGRR index 01e5f6844954a2a906ab91992cb663a88489eff7..0a9efd71161e33dde83418a7d86544b3a355444d 100755 --- a/wGRR +++ b/wGRR @@ -16,7 +16,7 @@ ALL_ARGS=($@) display_usage() { echo "wGRR version ${VERSION}" - echo "${bold}USAGE:${normal} $ZSH_ARGZERO -f <fasta_file> [OPTIONS]" + echo "${bold}USAGE:${normal} $ZSH_ARGZERO -i <fasta_file> [OPTIONS]" echo "" echo "${bold}MANDATORY PARAMETERS:${normal}" echo " -i <string> fasta file with all proteins of all the compared genetic elements."