From 8cc227c6cc884d3746a94fa2090690eee763b97a Mon Sep 17 00:00:00 2001
From: jgugliel <julien.guglielmini@pasteur.fr>
Date: Thu, 24 Feb 2022 22:53:58 +0100
Subject: [PATCH] small fixes
---
wGRR | 1 -
wGRR.awk | 2 +-
2 files changed, 1 insertion(+), 2 deletions(-)
diff --git a/wGRR b/wGRR
index bfa5988..d61bfbf 100755
--- a/wGRR
+++ b/wGRR
@@ -303,7 +303,6 @@ else
REQMEM=""
echo "[INFO] -- Estimating required memory"
M1=$(awk -f wGRR.awk -v MINP=1 -v MAXP=10 -v OUT=$OUT -v MEM=1 $OUT.allpairs.txt $PRT $OUT.m8)
- echo $M1
REQMEM=$(bc -l <<< $(numfmt --from=iec $M1)*($ARRAYSIZE/10) | numfmt --to=iec | awk '{U=$0;gsub(/[^A-Za-z]/,"",U);V=$0;gsub(/[A-Za-z]+$/,"",V);split(V,a,".");n=split(a[1],b,"");c=b[1]+1;i=1;while(++i<=n){c=c"0"}print c""U}')
echo "[INFO] -- $REQMEM per job required"
duration=$SECONDS
diff --git a/wGRR.awk b/wGRR.awk
index 4f91142..0b97c1d 100755
--- a/wGRR.awk
+++ b/wGRR.awk
@@ -296,6 +296,6 @@ END {
}
}
if(MEM){
- system("ps -wo rss,comm | grep wGRR.awk | grep "OUT" | sort -rn | awk '{print $1;exit}' | numfmt --from-unit=1024 --to=iec" )
+ system("ps T -wo rss,command | grep wGRR.awk | grep "OUT" | sort -rn | awk '{print $1;exit}' | numfmt --from-unit=1024 --to=iec" )
}
}
--
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