diff --git a/wGRR b/wGRR index 185e8aa936aaf4024877f6aad4d779e55a499c4d..0b57da680dcd8007a111ae91e033538eb559a016 100755 --- a/wGRR +++ b/wGRR @@ -236,7 +236,6 @@ duration=$SECONDS if [[ -f $OUT.allpairs.txt ]] ; then printf "%-10s -- %s %s%s\n" "[INFO]" "Using existing file" $OUT ".allpairs.txt" | tee -a ${OUT}.wgrr.log else - printf "%-10s -- %s\n" "[ELAPSED]" $(textifyDuration $duration) | tee -a ${OUT}.wgrr.log printf "%-10s -- %s\n" "[INFO]" "Writing genomes pairs" | tee -a ${OUT}.wgrr.log $AWKEXE 'BEGIN{x=1}/^>/{g=substr($1,2);gsub(/_[^_]+$/,"",g);if(FNR==1){a[x]=g;++x;currg=g;next}if(g!=currg){a[x]=g;x++;currg=g}}END{i=0;while(++i in a){j=i;while(++j in a){print a[i]"\t"a[j]}}}' $PRT > $OUT.allpairs.txt printf "%-10s -- %s\n" "[INFO]" "$(wc -l $OUT.allpairs.txt | $AWKEXE '{print $1}') pairs written" | tee -a ${OUT}.wgrr.log