From adc7be470f6ffc9b30d55f5aea41da15aa3307e4 Mon Sep 17 00:00:00 2001
From: jgugliel <julien.guglielmini@pasteur.fr>
Date: Sat, 19 Feb 2022 11:30:44 +0100
Subject: [PATCH] Removed default for reqmem
---
wGRR | 15 ++++++---------
1 file changed, 6 insertions(+), 9 deletions(-)
diff --git a/wGRR b/wGRR
index 00a1533..95821f3 100755
--- a/wGRR
+++ b/wGRR
@@ -302,15 +302,12 @@ if [[ $BATCHFLAG == 0 ]] ; then
fi
else
REQMEM=""
- if [[ $ARRAYSIZE -le 10000 ]] ; then
- REQMEM="1G"
- else
- echo "[INFO] -- Estimating required memory"
- M1=$(awk -f wGRR_mem.awk -v MINP=1 -v MAXP=10000 $OUT.allpairs.txt $OUT.m8)
- REQMEM=$(bc -l <<< "$ARRAYSIZE/10000*$M1*100" | numfmt --to=iec | awk '{U=$0;gsub(/[^A-Za-z]/,"",U);V=$0;gsub(/[A-Za-z]+$/,"",V);split(V,a,".");n=split(a[1],b,"");c=b[1]+1;i=1;while(++i<=n){c=c"0"}print c""U}')
- echo "[INFO] -- $REQMEM per job required"
- duration=$SECONDS
- printf "%-10s -- %s\n" "[TIME]" $(textifyDuration $duration)
+ echo "[INFO] -- Estimating required memory"
+ M1=$(awk -f wGRR_mem.awk -v MINP=1 -v MAXP=10000 $OUT.allpairs.txt $OUT.m8)
+ REQMEM=$(bc -l <<< "$ARRAYSIZE/10000*$M1*100" | numfmt --to=iec | awk '{U=$0;gsub(/[^A-Za-z]/,"",U);V=$0;gsub(/[A-Za-z]+$/,"",V);split(V,a,".");n=split(a[1],b,"");c=b[1]+1;i=1;while(++i<=n){c=c"0"}print c""U}')
+ echo "[INFO] -- $REQMEM per job required"
+ duration=$SECONDS
+ printf "%-10s -- %s\n" "[TIME]" $(textifyDuration $duration)
fi
echo "[INFO] -- Submitting $NJOBS jobs for wGRR calculation"
if [[ $PARTITION == "common" ]] ; then
--
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