From 0ad77c74cc0e8db86f52222907b3318582a7188f Mon Sep 17 00:00:00 2001
From: Cyril NERIN <cnerin@pasteur.fr>
Date: Tue, 27 Jul 2021 17:15:16 +0200
Subject: [PATCH] FIX #92 FEAT #93 FEAT #94
---
jass/server.py | 41 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
diff --git a/jass/server.py b/jass/server.py
index 7f931125..a2c7969e 100644
--- a/jass/server.py
+++ b/jass/server.py
@@ -40,6 +40,7 @@ class LocalProjectParamsSchema(ma.Schema):
chromosome = ma.fields.Integer()
start = ma.fields.Integer()
end = ma.fields.Integer()
+ to_init = ma.fields.Integer()
class ProjectStatusSchema(ma.Schema):
@@ -120,6 +121,7 @@ class LocalProjectCreateMethodView(MethodView):
str(parameters["chromosome"]),
str(parameters["start"]),
str(parameters["end"]),
+ str(parameters["to_init"]),
)
@@ -396,6 +398,45 @@ class ProjectZoomPlotMethodView(MethodView):
abort(500)
+@blp_projects.route("/<project_id>/gene_exon")
+class ProjectGeneExonMethodView(MethodView):
+ def get(self, project_id):
+ try:
+ return (
+ Project(id=project_id).get_project_gene_exon_data(),
+ 200,
+ {"Content-Type": "text/plain; charset=utf-8"},
+ )
+ except FileNotFoundError:
+ status = Project(id=project_id).status
+ if status == Project.DOES_NOT_EXIST:
+ return (
+ f"project {project_id} does not exist",
+ 404,
+ {"Content-Type": "text/plain; charset=utf-8"},
+ )
+ elif status["worktable"] == Project.CREATING:
+ return (
+ "data not ready yet",
+ 202,
+ {"Content-Type": "text/plain; charset=utf-8"},
+ )
+ else:
+ abort(500)
+
+
+@blp_projects.route("/<project_id>/error_msg")
+class ProjectErrorMsgMethodView(MethodView):
+ def get(self, project_id):
+ return Project(id=project_id).get_error_msg()
+
+
+@blp_projects.route("/<project_id>/dispo_gene_exon")
+class ProjectDispoGeneExonMethodView(MethodView):
+ def get(self, project_id):
+ return Project(id=project_id).get_dispo_gene_exon()
+
+
class JassApp(Flask):
"""
JassApp builds the JASS Flask application
--
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