From 338f5c8ccde1b24077241087042e44a8adc9c01c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Herv=C3=A9=20=20MENAGER?= <herve.menager@pasteur.fr>
Date: Wed, 21 Mar 2018 23:00:38 +0100
Subject: [PATCH] correct parameter name in read_dataframe_and_stringize()
---
jass/models/worktable.py | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/jass/models/worktable.py b/jass/models/worktable.py
index dfdd1c04..a60bd1b3 100755
--- a/jass/models/worktable.py
+++ b/jass/models/worktable.py
@@ -182,15 +182,15 @@ def create_worktable_file(phenotype_ids: List[str], init_file_path: str, project
format='table', data_columns=True) # Summary Table (contigency table)
hdf_work.close()
-def read_dataframe_and_stringize(hdf_path: str, frame: str):
+def read_dataframe_and_stringize(project_hdf_path: str, frame: str):
"""
Read a dataframe from a worktable file and reformat Region and Chromosome
numbers as strings.
This will eventually be deprecated once the js code accepts integers instead
of strings
- :param hdf_path: path to the worktable file
- :type hdf_path: str
+ :param project_hdf_path: path to the worktable file
+ :type project_hdf_path: str
:param frame: name of the frame to be read
:type frame: str
:return: The dataframe with converted Region and CHR columns
--
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