From 45a6cfcd156872f52bdb5a93cd99c6b846a16c2e Mon Sep 17 00:00:00 2001
From: Veronique Legrand <vlegrand@pasteur.fr>
Date: Mon, 3 Mar 2025 10:52:50 +0100
Subject: [PATCH] added test for get_inittable_metadata function that seems to
cause a problem in production
---
jass/test/test_init_table.py | 9 ++++++++-
1 file changed, 8 insertions(+), 1 deletion(-)
diff --git a/jass/test/test_init_table.py b/jass/test/test_init_table.py
index bb400510..c2be0c5e 100644
--- a/jass/test/test_init_table.py
+++ b/jass/test/test_init_table.py
@@ -6,7 +6,7 @@ import os, shutil, tempfile
from pandas.testing import assert_frame_equal
from pandas import read_hdf
-from jass.models.inittable import create_inittable_file
+from jass.models.inittable import create_inittable_file,get_inittable_meta
from . import JassTestCase
@@ -68,6 +68,13 @@ class TestInitTable(object):
"""
assert_frame_equal(self.expected_cov, self.result_cov, check_like=True)
+ def test_get_inittable_meta(self):
+ m_data=get_inittable_meta(self.get_file_path_fn("initTable.hdf5"))
+ self.assertEqual(m_data['nb_snps'],737)
+ self.assertEqual(m_data['nb_phenotypes'],4)
+ self.assertEqual(m_data['assembly'],'hg99')
+ self.assertEqual(m_data['name'],'Small subset of Curated GWAS data')
+ #print(m_data)
class TestInitTableNoNans(TestInitTable, JassTestCase):
computed_cov = True
--
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