diff --git a/jass/models/worktable.py b/jass/models/worktable.py index 767af535183a2ec74480a57a63a3a4f9e99cbc16..bdac8ac9e61d84db0e245fad725cdfe993ac269c 100755 --- a/jass/models/worktable.py +++ b/jass/models/worktable.py @@ -51,7 +51,7 @@ def create_worktable_file(phenotype_ids: List[str], init_file_path: str, project region_sub_table_min_itemsizes = {'Region': 10, 'index': 10, 'CHR': 5} smart_na_computation = not(remove_nan) if smart_na_computation: - compute_jost = make_compute_jost_withnan(sub_cov) + compute_jost = make_compute_jost_withnan_dumb(sub_cov) else: compute_jost = make_compute_jost_nonan(sub_cov) for region_number in regions: @@ -116,7 +116,7 @@ def make_compute_jost_withnan_dumb(cov): p = znonan.shape[0] chi = np.sum(np.multiply(znonan, znonan.dot(invcov))) return spst.chi2.sf(chi, df=p) - return compute_jost_nonan + return compute_jost_withnan_dumb def make_compute_jost_withnan(cov, nb_patterns=10): """