From 7dad1721345d906cf79ac62de4482a1de6fb93e4 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Herv=C3=A9=20=20MENAGER?= <herve.menager@pasteur.fr>
Date: Thu, 28 Dec 2017 13:47:56 +0100
Subject: [PATCH] minor corrections on temp version of dumb version for jost
compute
---
jass/models/worktable.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/jass/models/worktable.py b/jass/models/worktable.py
index 767af535..bdac8ac9 100755
--- a/jass/models/worktable.py
+++ b/jass/models/worktable.py
@@ -51,7 +51,7 @@ def create_worktable_file(phenotype_ids: List[str], init_file_path: str, project
region_sub_table_min_itemsizes = {'Region': 10, 'index': 10, 'CHR': 5}
smart_na_computation = not(remove_nan)
if smart_na_computation:
- compute_jost = make_compute_jost_withnan(sub_cov)
+ compute_jost = make_compute_jost_withnan_dumb(sub_cov)
else:
compute_jost = make_compute_jost_nonan(sub_cov)
for region_number in regions:
@@ -116,7 +116,7 @@ def make_compute_jost_withnan_dumb(cov):
p = znonan.shape[0]
chi = np.sum(np.multiply(znonan, znonan.dot(invcov)))
return spst.chi2.sf(chi, df=p)
- return compute_jost_nonan
+ return compute_jost_withnan_dumb
def make_compute_jost_withnan(cov, nb_patterns=10):
"""
--
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