diff --git a/doc/source/data_import.rst b/doc/source/data_import.rst index 8953ca7ecf57e6ef16efcadb6833409cccd8e503..00aa2d3eac553d5ea9a79fb670c7d8d16138cafb 100644 --- a/doc/source/data_import.rst +++ b/doc/source/data_import.rst @@ -84,6 +84,8 @@ The init table generation is performed using JASS with the previously-mentionned # import GWAS data into JASS jass create-inittable --input-data-path "GWAS/*.txt" --init-covariance-path "COV.txt" --regions-map-path "regions.txt" --description-file-path "description.txt" --init-table-path "inittable.hdf5" +.. _Create initTable: + How to generate input data for JASS ----------------------------------- diff --git a/doc/source/install.rst b/doc/source/install.rst index 23328fc9268658c532e8b258583dba89deed834c..f01b156766e0ce3a3caee3a21396bff0dfd742dd 100644 --- a/doc/source/install.rst +++ b/doc/source/install.rst @@ -113,7 +113,7 @@ If using docker-compose is not an option, you need to launch two servers in two Launching with docker compose (recommended) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -Once docker and docker-compose installed, just run +Once docker and docker-compose installed, copy the :ref:`initTable.hdf5 you created <Create initTable>` in data/ folder and then run .. code-block:: shell @@ -123,6 +123,15 @@ Once docker and docker-compose installed, just run docker-compose up # then visit http://0.0.0.0:3000/ +If you just want to try jass with test data (i.e without creating an initTable), run: + +.. code-block:: shell + + # build the application + docker-compose build + # launch the whole application with + docker-compose -f docker-compose.yaml -f docker-compose.test.yaml up + # then visit http://0.0.0.0:3000/ launching the two servers on Linux ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~