diff --git a/README.md b/README.md
deleted file mode 100644
index 5f93a03e6acafe74f55a1ecf541ac4819690412e..0000000000000000000000000000000000000000
--- a/README.md
+++ /dev/null
@@ -1,5 +0,0 @@
-Contents of the repository:
-* Swagger definition files for the server API:
- * `swagger-pcmaweb.yaml`
- * `swagger-pcmaweb.json`
- These can easily be edited on http://editor.swagger.io
diff --git a/swagger-pcmaweb.json b/swagger-pcmaweb.json
deleted file mode 100644
index 5975f7bcd1bcc58187cbb3f9a86881aa693c9610..0000000000000000000000000000000000000000
--- a/swagger-pcmaweb.json
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@@ -1,196 +0,0 @@
-{
- "swagger": "2.0",
- "info": {
- "version": "0.0.0",
- "title": "PCMAWeb API Specification"
- },
- "paths": {
- "/phenotypes": {
- "get": {
- "description": "Gets the list of available phenotypes\n",
- "responses": {
- "200": {
- "description": "List of the available phenotypes",
- "schema": {
- "title": "ArrayOfPhenotypes",
- "type": "array",
- "items": {
- "title": "Phenotype",
- "type": "object",
- "properties": {
- "id": {
- "type": "string"
- },
- "label": {
- "type": "string"
- }
- }
- }
- }
- }
- }
- }
- },
- "/projects": {
- "post": {
- "description": "Create a new project from a selection of phenotypes\n",
- "parameters": [
- {
- "name": "phenotypeID",
- "in": "formData",
- "description": "IDs of the phenotypes selected for the project",
- "required": true,
- "type": "array",
- "items": {
- "type": "string"
- }
- }
- ],
- "responses": {
- "200": {
- "description": "Project created",
- "schema": {
- "title": "ProjectID",
- "type": "string"
- }
- }
- }
- },
- "get": {
- "description": "Gets `Project` characteristics (listed phenotypes).\n",
- "responses": {
- "200": {
- "description": "Retrieved project",
- "schema": {
- "title": "ArrayOfPhenotypes",
- "type": "array",
- "items": {
- "title": "Phenotype",
- "type": "object",
- "properties": {
- "id": {
- "type": "string"
- },
- "label": {
- "type": "string"
- }
- }
- }
- }
- }
- }
- }
- },
- "/projects/{projectID}": {
- "get": {
- "description": "Retrieve a project definition\n",
- "parameters": [
- {
- "in": "path",
- "name": "projectID",
- "description": "project ID",
- "required": true,
- "type": "string"
- }
- ],
- "responses": {
- "200": {
- "description": "Retrieved project",
- "schema": {
- "title": "Phenotype",
- "type": "object",
- "properties": {
- "id": {
- "type": "string"
- },
- "label": {
- "type": "string"
- }
- }
- }
- }
- }
- }
- },
- "/projects/{projectID}/genome": {
- "get": {
- "description": "Retrieve genome panel data for a given project\n",
- "parameters": [
- {
- "in": "path",
- "name": "projectID",
- "description": "project ID",
- "required": true,
- "type": "string"
- },
- {
- "name": "threshold",
- "in": "query",
- "description": "significance threshold for the SNPs",
- "required": false,
- "type": "number"
- }
- ],
- "produces": [
- "text/tab-separated-values; charset=utf-8"
- ],
- "responses": {
- "200": {
- "description": "Genome panel data in TSV format, where each column is position:chrid:p-value\n",
- "schema": {
- "title": "Genome panel data",
- "type": "string"
- }
- }
- }
- }
- },
- "/projects/{projectID}/datazoom": {
- "get": {
- "description": "Manhattan plot and heatmap data\n",
- "parameters": [
- {
- "in": "path",
- "name": "projectID",
- "description": "project ID",
- "required": true,
- "type": "string"
- },
- {
- "name": "threshold",
- "in": "query",
- "description": "significance threshold for the SNPs",
- "required": false,
- "type": "number"
- },
- {
- "name": "start-pos",
- "in": "query",
- "description": "start position for the SNPs",
- "required": false,
- "type": "number"
- },
- {
- "name": "end-pos",
- "in": "query",
- "description": "end position for the SNPs",
- "required": false,
- "type": "number"
- }
- ],
- "produces": [
- "text/tab-separated-values; charset=utf-8"
- ],
- "responses": {
- "200": {
- "description": "Manhattan plot and heatmap data in TSV format\nEach line is a SNP with the first column containing the SNP ID, the second the Chromosome ID and the third the position (absolute or relative in the chromosome?), the fourth the joint statistic, and the 5th and following columns the phenotype-specific statistics.\n",
- "schema": {
- "title": "Manhattan plot/Heatmap data",
- "type": "string"
- }
- }
- }
- }
- }
- }
-}
\ No newline at end of file
diff --git a/swagger-pcmaweb.yaml b/swagger-pcmaweb.yaml
deleted file mode 100644
index 0ebb4c730d201c8be3e45627341c2b8184e3b664..0000000000000000000000000000000000000000
--- a/swagger-pcmaweb.yaml
+++ /dev/null
@@ -1,140 +0,0 @@
-swagger: '2.0'
-
-info:
- version: "0.0.0"
- title: PCMAWeb API Specification
-
-paths:
- /phenotypes:
- get:
- description: |
- Gets the list of available phenotypes
- responses:
- 200:
- description: List of the available phenotypes
- schema:
- title: ArrayOfPhenotypes
- type: array
- items:
- title: Phenotype
- type: object
- properties:
- id:
- type: string
- label:
- type: string
- /projects:
- post:
- description: |
- Create a new project from a selection of phenotypes
- parameters:
- - name: phenotypeID
- in: formData
- description: IDs of the phenotypes selected for the project
- required: true
- type: array
- items:
- type: string
- responses:
- 200:
- description: Project created
- schema:
- title: ProjectID
- type: string
- get:
- description: |
- Gets `Project` characteristics (listed phenotypes).
- responses:
- 200:
- description: Retrieved project
- schema:
- title: ArrayOfPhenotypes
- type: array
- items:
- title: Phenotype
- type: object
- properties:
- id:
- type: string
- label:
- type: string
- /projects/{projectID}:
- get:
- description: |
- Retrieve a project definition
- parameters:
- - in: path
- name: projectID
- description: project ID
- required: true
- type: string
- responses:
- 200:
- description: Retrieved project
- schema:
- title: Phenotype
- type: object
- properties:
- id:
- type: string
- label:
- type: string
- /projects/{projectID}/genome:
- get:
- description: |
- Retrieve genome panel data for a given project
- parameters:
- - in: path
- name: projectID
- description: project ID
- required: true
- type: string
- - name: threshold
- in: query
- description: significance threshold for the SNPs
- required: false
- type: number
- produces:
- - "text/tab-separated-values; charset=utf-8"
- responses:
- 200:
- description: |
- Genome panel data in TSV format, where each column is position:chrid:p-value
- schema:
- title: Genome panel data
- type: string
- /projects/{projectID}/datazoom:
- get:
- description: |
- Manhattan plot and heatmap data
- parameters:
- - in: path
- name: projectID
- description: project ID
- required: true
- type: string
- - name: threshold
- in: query
- description: significance threshold for the SNPs
- required: false
- type: number
- - name: start-pos
- in: query
- description: start position for the SNPs
- required: false
- type: number
- - name: end-pos
- in: query
- description: end position for the SNPs
- required: false
- type: number
- produces:
- - "text/tab-separated-values; charset=utf-8"
- responses:
- 200:
- description: |
- Manhattan plot and heatmap data in TSV format
- Each line is a SNP with the first column containing the SNP ID, the second the Chromosome ID and the third the position (absolute or relative in the chromosome?), the fourth the joint statistic, and the 5th and following columns the phenotype-specific statistics.
- schema:
- title: Manhattan plot/Heatmap data
- type: string
\ No newline at end of file