From d8d788648a38b68db7428f2222884360867e74f1 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Herv=C3=A9=20=20MENAGER?= <herve.menager@pasteur.fr>
Date: Wed, 29 Mar 2017 22:52:30 +0200
Subject: [PATCH] remove old files
---
README.md | 5 --
swagger-pcmaweb.json | 196 -------------------------------------------
swagger-pcmaweb.yaml | 140 -------------------------------
3 files changed, 341 deletions(-)
delete mode 100644 README.md
delete mode 100644 swagger-pcmaweb.json
delete mode 100644 swagger-pcmaweb.yaml
diff --git a/README.md b/README.md
deleted file mode 100644
index 5f93a03e..00000000
--- a/README.md
+++ /dev/null
@@ -1,5 +0,0 @@
-Contents of the repository:
-* Swagger definition files for the server API:
- * `swagger-pcmaweb.yaml`
- * `swagger-pcmaweb.json`
- These can easily be edited on http://editor.swagger.io
diff --git a/swagger-pcmaweb.json b/swagger-pcmaweb.json
deleted file mode 100644
index 5975f7bc..00000000
--- a/swagger-pcmaweb.json
+++ /dev/null
@@ -1,196 +0,0 @@
-{
- "swagger": "2.0",
- "info": {
- "version": "0.0.0",
- "title": "PCMAWeb API Specification"
- },
- "paths": {
- "/phenotypes": {
- "get": {
- "description": "Gets the list of available phenotypes\n",
- "responses": {
- "200": {
- "description": "List of the available phenotypes",
- "schema": {
- "title": "ArrayOfPhenotypes",
- "type": "array",
- "items": {
- "title": "Phenotype",
- "type": "object",
- "properties": {
- "id": {
- "type": "string"
- },
- "label": {
- "type": "string"
- }
- }
- }
- }
- }
- }
- }
- },
- "/projects": {
- "post": {
- "description": "Create a new project from a selection of phenotypes\n",
- "parameters": [
- {
- "name": "phenotypeID",
- "in": "formData",
- "description": "IDs of the phenotypes selected for the project",
- "required": true,
- "type": "array",
- "items": {
- "type": "string"
- }
- }
- ],
- "responses": {
- "200": {
- "description": "Project created",
- "schema": {
- "title": "ProjectID",
- "type": "string"
- }
- }
- }
- },
- "get": {
- "description": "Gets `Project` characteristics (listed phenotypes).\n",
- "responses": {
- "200": {
- "description": "Retrieved project",
- "schema": {
- "title": "ArrayOfPhenotypes",
- "type": "array",
- "items": {
- "title": "Phenotype",
- "type": "object",
- "properties": {
- "id": {
- "type": "string"
- },
- "label": {
- "type": "string"
- }
- }
- }
- }
- }
- }
- }
- },
- "/projects/{projectID}": {
- "get": {
- "description": "Retrieve a project definition\n",
- "parameters": [
- {
- "in": "path",
- "name": "projectID",
- "description": "project ID",
- "required": true,
- "type": "string"
- }
- ],
- "responses": {
- "200": {
- "description": "Retrieved project",
- "schema": {
- "title": "Phenotype",
- "type": "object",
- "properties": {
- "id": {
- "type": "string"
- },
- "label": {
- "type": "string"
- }
- }
- }
- }
- }
- }
- },
- "/projects/{projectID}/genome": {
- "get": {
- "description": "Retrieve genome panel data for a given project\n",
- "parameters": [
- {
- "in": "path",
- "name": "projectID",
- "description": "project ID",
- "required": true,
- "type": "string"
- },
- {
- "name": "threshold",
- "in": "query",
- "description": "significance threshold for the SNPs",
- "required": false,
- "type": "number"
- }
- ],
- "produces": [
- "text/tab-separated-values; charset=utf-8"
- ],
- "responses": {
- "200": {
- "description": "Genome panel data in TSV format, where each column is position:chrid:p-value\n",
- "schema": {
- "title": "Genome panel data",
- "type": "string"
- }
- }
- }
- }
- },
- "/projects/{projectID}/datazoom": {
- "get": {
- "description": "Manhattan plot and heatmap data\n",
- "parameters": [
- {
- "in": "path",
- "name": "projectID",
- "description": "project ID",
- "required": true,
- "type": "string"
- },
- {
- "name": "threshold",
- "in": "query",
- "description": "significance threshold for the SNPs",
- "required": false,
- "type": "number"
- },
- {
- "name": "start-pos",
- "in": "query",
- "description": "start position for the SNPs",
- "required": false,
- "type": "number"
- },
- {
- "name": "end-pos",
- "in": "query",
- "description": "end position for the SNPs",
- "required": false,
- "type": "number"
- }
- ],
- "produces": [
- "text/tab-separated-values; charset=utf-8"
- ],
- "responses": {
- "200": {
- "description": "Manhattan plot and heatmap data in TSV format\nEach line is a SNP with the first column containing the SNP ID, the second the Chromosome ID and the third the position (absolute or relative in the chromosome?), the fourth the joint statistic, and the 5th and following columns the phenotype-specific statistics.\n",
- "schema": {
- "title": "Manhattan plot/Heatmap data",
- "type": "string"
- }
- }
- }
- }
- }
- }
-}
\ No newline at end of file
diff --git a/swagger-pcmaweb.yaml b/swagger-pcmaweb.yaml
deleted file mode 100644
index 0ebb4c73..00000000
--- a/swagger-pcmaweb.yaml
+++ /dev/null
@@ -1,140 +0,0 @@
-swagger: '2.0'
-
-info:
- version: "0.0.0"
- title: PCMAWeb API Specification
-
-paths:
- /phenotypes:
- get:
- description: |
- Gets the list of available phenotypes
- responses:
- 200:
- description: List of the available phenotypes
- schema:
- title: ArrayOfPhenotypes
- type: array
- items:
- title: Phenotype
- type: object
- properties:
- id:
- type: string
- label:
- type: string
- /projects:
- post:
- description: |
- Create a new project from a selection of phenotypes
- parameters:
- - name: phenotypeID
- in: formData
- description: IDs of the phenotypes selected for the project
- required: true
- type: array
- items:
- type: string
- responses:
- 200:
- description: Project created
- schema:
- title: ProjectID
- type: string
- get:
- description: |
- Gets `Project` characteristics (listed phenotypes).
- responses:
- 200:
- description: Retrieved project
- schema:
- title: ArrayOfPhenotypes
- type: array
- items:
- title: Phenotype
- type: object
- properties:
- id:
- type: string
- label:
- type: string
- /projects/{projectID}:
- get:
- description: |
- Retrieve a project definition
- parameters:
- - in: path
- name: projectID
- description: project ID
- required: true
- type: string
- responses:
- 200:
- description: Retrieved project
- schema:
- title: Phenotype
- type: object
- properties:
- id:
- type: string
- label:
- type: string
- /projects/{projectID}/genome:
- get:
- description: |
- Retrieve genome panel data for a given project
- parameters:
- - in: path
- name: projectID
- description: project ID
- required: true
- type: string
- - name: threshold
- in: query
- description: significance threshold for the SNPs
- required: false
- type: number
- produces:
- - "text/tab-separated-values; charset=utf-8"
- responses:
- 200:
- description: |
- Genome panel data in TSV format, where each column is position:chrid:p-value
- schema:
- title: Genome panel data
- type: string
- /projects/{projectID}/datazoom:
- get:
- description: |
- Manhattan plot and heatmap data
- parameters:
- - in: path
- name: projectID
- description: project ID
- required: true
- type: string
- - name: threshold
- in: query
- description: significance threshold for the SNPs
- required: false
- type: number
- - name: start-pos
- in: query
- description: start position for the SNPs
- required: false
- type: number
- - name: end-pos
- in: query
- description: end position for the SNPs
- required: false
- type: number
- produces:
- - "text/tab-separated-values; charset=utf-8"
- responses:
- 200:
- description: |
- Manhattan plot and heatmap data in TSV format
- Each line is a SNP with the first column containing the SNP ID, the second the Chromosome ID and the third the position (absolute or relative in the chromosome?), the fourth the joint statistic, and the 5th and following columns the phenotype-specific statistics.
- schema:
- title: Manhattan plot/Heatmap data
- type: string
\ No newline at end of file
--
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