From fdef625c79b4c7eac91ca3ae6f04f6aedfcd591c Mon Sep 17 00:00:00 2001
From: hjulienn <hanna.julienne@pasteur.fr>
Date: Tue, 23 Jan 2024 16:00:58 +0100
Subject: [PATCH] fixed issue in __main__.py
---
jass/__main__.py | 6 +++++-
jass/models/inittable.py | 2 --
2 files changed, 5 insertions(+), 3 deletions(-)
diff --git a/jass/__main__.py b/jass/__main__.py
index 8779f1fe..586b489b 100644
--- a/jass/__main__.py
+++ b/jass/__main__.py
@@ -231,7 +231,11 @@ def w_create_inittable(args):
regions_map_path = absolute_path_of_the_file(args.regions_map_path)
description_file_path = absolute_path_of_the_file(args.description_file_path)
- init_table_metadata_path = absolute_path_of_the_file(args.init_table_metadata_path)
+
+ if args.init_table_metadata_path is not None:
+ init_table_metadata_path = absolute_path_of_the_file(args.init_table_metadata_path)
+ else:
+ init_table_metadata_path = None
init_table_path = absolute_path_of_the_file(args.init_table_path, True)
create_inittable_file(
diff --git a/jass/models/inittable.py b/jass/models/inittable.py
index 72785ee3..0ae5d961 100644
--- a/jass/models/inittable.py
+++ b/jass/models/inittable.py
@@ -94,7 +94,6 @@ def create_pheno_summary(description):
"Reference",
"ReferenceLink",
"dataLink",
- "internalDataLink",
"Nsample",
"Ncase",
"Ncontrol",
@@ -130,7 +129,6 @@ def create_pheno_summary(description):
"Reference",
"ReferenceLink",
"dataLink",
- "internalDataLink",
"Nsample",
"Ncase",
"Ncontrol",
--
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