From 713691a28a32e576cabe94bc3dbb4bdc5b7f8b6f Mon Sep 17 00:00:00 2001 From: Hanna JULIENNE <hanna.julienne@pasteur.fr> Date: Fri, 10 Jan 2025 10:47:18 +0100 Subject: [PATCH] Update file compute_score.py --- jass_preprocessing/compute_score.py | 8 ++------ 1 file changed, 2 insertions(+), 6 deletions(-) diff --git a/jass_preprocessing/compute_score.py b/jass_preprocessing/compute_score.py index 1a1217a..fe7425c 100644 --- a/jass_preprocessing/compute_score.py +++ b/jass_preprocessing/compute_score.py @@ -25,13 +25,9 @@ def compute_z_score(mgwas): print(mgwas.columns) mgwas["computed_z"] = np.sqrt(ss.chi2.isf(mgwas['pval'], 1)) - if 'z' in mgwas.columns: - sign_vect = np.sign(mgwas.z) - - mgwas.loc[mgwas["computed_z"].isin([np.inf]), 'computed_z'] = mgwas["z"] - elif 'beta_or_Z' in mgwas.columns: - sign_vect = np.sign(mgwas.beta) + if 'beta_or_Z' in mgwas.columns: + sign_vect = np.sign(mgwas.beta_or_Z) mgwas["computed_z"] = mgwas["computed_z"].replace(np.inf, 37.537836095576054) else: if "OR" in mgwas.columns: -- GitLab