From b13fe091da8bf917251f1ccc6006f14327ec12a5 Mon Sep 17 00:00:00 2001 From: Hanna JULIENNE <hanna.julienne@pasteur.fr> Date: Thu, 9 Jan 2025 18:30:12 +0100 Subject: [PATCH] Fixed beta_or_Z column name --- jass_preprocessing/compute_score.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/jass_preprocessing/compute_score.py b/jass_preprocessing/compute_score.py index 7e026c0..1a1217a 100644 --- a/jass_preprocessing/compute_score.py +++ b/jass_preprocessing/compute_score.py @@ -30,7 +30,7 @@ def compute_z_score(mgwas): mgwas.loc[mgwas["computed_z"].isin([np.inf]), 'computed_z'] = mgwas["z"] - elif 'beta' in mgwas.columns: + elif 'beta_or_Z' in mgwas.columns: sign_vect = np.sign(mgwas.beta) mgwas["computed_z"] = mgwas["computed_z"].replace(np.inf, 37.537836095576054) else: -- GitLab