diff --git a/R/coGSEA.r b/R/coGSEA.r index 76e39f3344853b18fd8f8a624fce4e5168d45e71..3f8ce980a9adda5ce987d9a2357b6b7361193aef 100644 --- a/R/coGSEA.r +++ b/R/coGSEA.r @@ -3,7 +3,7 @@ #' #' @param ElistObject An Elist object. #' @param contrastMatrix A contrast matrix. -#' @param geneSetCollection H, C2_KEGG, or C2_REACTOME, default to H (character). +#' @param geneSetCollection H, C2_KEGG, or C2_REACTOME, default to H (character). Can be custom of class list. #' @param specie Mus musculus or Homo sapiens, default to Mus Musculus (character). #' @param ENTREZGenesIds vector of gene ENTREZ identifiers. #' @param directoryPath path to existing directory where to save the results ("character"). diff --git a/man/coGSEA.Rd b/man/coGSEA.Rd index 09befb5ffa1091bc219bdafb1a57db932fbacc53..686f7a9474b158e5f925a2ce247cad063f646ae4 100644 --- a/man/coGSEA.Rd +++ b/man/coGSEA.Rd @@ -18,7 +18,7 @@ coGSEA(ElistObject, contrastMatrix, ENTREZGenesIds, geneSetCollection = "H", \item{ENTREZGenesIds}{vector of gene ENTREZ identifiers.} -\item{geneSetCollection}{H, C2_KEGG, or C2_REACTOME, default to H (character).} +\item{geneSetCollection}{H, C2_KEGG, or C2_REACTOME, default to H (character). Can be custom of class list.} \item{specie}{Mus musculus or Homo sapiens, default to Mus Musculus (character).}