diff --git a/frontend/components/Navbar.vue b/frontend/components/Navbar.vue
index 058cf045ad94bb994d92f7bb7078a84e5dad479f..2c331f6682a587a8272a70504efa393bb9e8e92c 100644
--- a/frontend/components/Navbar.vue
+++ b/frontend/components/Navbar.vue
@@ -32,9 +32,9 @@ const sections = ref([
to: '/',
},
{ id: "wiki", label: "Wiki", toWiki: "/" },
- { id: "refseq", label: "RefSeq DB", toWiki: '/refseq/' },
- { id: "structure", label: "Structure DB", toWiki: '/structure/' },
- { id: "help", label: "Help", toWiki: "/help/defensefinder/" },
+ { id: "refseq", label: "RefSeq DB", toWiki: '/refseq' },
+ { id: "structure", label: "Structure DB", toWiki: '/structure' },
+ { id: "help", label: "Help", toWiki: "/help/defensefinder" },
]);
const computedSections = computed(() => {
diff --git a/frontend/composables/useWikiUrl.ts b/frontend/composables/useWikiUrl.ts
index ef2ac1c5d06eae7e6ae38b9e6c3624283547ec9a..743e325d4297b5e5a21e4e6a19e5e232691d00da 100644
--- a/frontend/composables/useWikiUrl.ts
+++ b/frontend/composables/useWikiUrl.ts
@@ -1,4 +1,4 @@
-import { withTrailingSlash, withLeadingSlash, joinURL } from "ufo";
+import { withoutTrailingSlash, withLeadingSlash, joinURL } from "ufo";
export function useWikiUrl(url: string | Ref<string>) {
@@ -6,7 +6,7 @@ export function useWikiUrl(url: string | Ref<string>) {
const sanitzedUrl = toValue(url)
if (sanitzedUrl.startsWith("/") && !sanitzedUrl.startsWith("//")) {
const _base = withLeadingSlash(
- withTrailingSlash(useRuntimeConfig().public.wikiUrl)
+ withoutTrailingSlash(useRuntimeConfig().public.wikiUrl)
);
if (_base !== "/" && !sanitzedUrl.startsWith(_base)) {
return joinURL(_base, sanitzedUrl);
diff --git a/frontend/nuxt.config.ts b/frontend/nuxt.config.ts
index ff25c03f935e61a57ab3ec0d28f6ce708978eea6..f616c4fb7cf1a86e411dc05c0de7f563a2ae942c 100644
--- a/frontend/nuxt.config.ts
+++ b/frontend/nuxt.config.ts
@@ -18,6 +18,7 @@ export default defineNuxtConfig({
}
},
modules: [
+ '@unocss/nuxt',
'vuetify-nuxt-module',
'@nuxtjs/plausible',
"nuxt-security",
@@ -48,10 +49,17 @@ export default defineNuxtConfig({
vuetifyOptions: {
labComponents: true,
icons: {
- defaultSet: 'mdi',
+ defaultSet: 'unocss-mdi',
sets: ['mdi', 'fa', 'md'],
+ unocssIcons: {
+ // default is i-mdi:close-circle
+ // database: 'i-tabler:database',
+ // even from another collection, default is i-mdi:chevron-up
+ // generalconcept: 'i-mdi:book-education-outline',
+ // help: 'i-tabler:help'
+ }
},
- blueprint: md3,
+ blueprint: md3
}
diff --git a/frontend/package-lock.json b/frontend/package-lock.json
index d1c5e03dfa6a193cf972f38dca3bbae4e824598b..f1197f76a5dcd62b1dc5c8ea45cc7b105d2249eb 100644
--- a/frontend/package-lock.json
+++ b/frontend/package-lock.json
@@ -23,23 +23,28 @@
"vee-validate": "^4.12.4"
},
"devDependencies": {
+ "@iconify-json/material-symbols": "^1.1.76",
+ "@iconify-json/mdi": "^1.1.64",
+ "@iconify-json/tabler": "^1.1.109",
"@nuxt/devtools": "latest",
"@nuxtjs/plausible": "^0.2.4",
"@nuxtjs/seo": "^2.0.0-rc.9",
"@types/node": "^20.11.6",
+ "@unocss/nuxt": "^0.58.7",
+ "@unocss/preset-icons": "^0.58.7",
"nuxt": "^3.9.3",
"nuxt-security": "^0.14.2",
"vuetify-nuxt-module": "^0.10.2"
}
},
"node_modules/@ampproject/remapping": {
- "version": "2.2.1",
- "resolved": "https://registry.npmjs.org/@ampproject/remapping/-/remapping-2.2.1.tgz",
- "integrity": "sha512-lFMjJTrFL3j7L9yBxwYfCq2k6qqwHyzuUl/XBnif78PWTJYyL/dfowQHWE3sp6U6ZzqWiiIZnpTMO96zhkjwtg==",
+ "version": "2.3.0",
+ "resolved": "https://registry.npmjs.org/@ampproject/remapping/-/remapping-2.3.0.tgz",
+ "integrity": "sha512-30iZtAPgz+LTIYoeivqYo853f02jBYSd5uGnGpkFV0M3xOt9aN73erkgYAmZU43x4VfqcnLxW9Kpg3R5LC4YYw==",
"dev": true,
"dependencies": {
- "@jridgewell/gen-mapping": "^0.3.0",
- "@jridgewell/trace-mapping": "^0.3.9"
+ "@jridgewell/gen-mapping": "^0.3.5",
+ "@jridgewell/trace-mapping": "^0.3.24"
},
"engines": {
"node": ">=6.0.0"
@@ -157,13 +162,13 @@
}
},
"node_modules/@babel/code-frame": {
- "version": "7.23.5",
- "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.23.5.tgz",
- "integrity": "sha512-CgH3s1a96LipHCmSUmYFPwY7MNx8C3avkq7i4Wl3cfa662ldtUe4VM1TPXX70pfmrlWTb6jLqTYrZyT2ZTJBgA==",
+ "version": "7.24.2",
+ "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.24.2.tgz",
+ "integrity": "sha512-y5+tLQyV8pg3fsiln67BVLD1P13Eg4lh5RW9mF0zUuvLrv9uIQ4MCL+CRT+FTsBlBjcIan6PGsLcBN0m3ClUyQ==",
"dev": true,
"dependencies": {
- "@babel/highlight": "^7.23.4",
- "chalk": "^2.4.2"
+ "@babel/highlight": "^7.24.2",
+ "picocolors": "^1.0.0"
},
"engines": {
"node": ">=6.9.0"
@@ -179,20 +184,20 @@
}
},
"node_modules/@babel/core": {
- "version": "7.24.0",
- "resolved": "https://registry.npmjs.org/@babel/core/-/core-7.24.0.tgz",
- "integrity": "sha512-fQfkg0Gjkza3nf0c7/w6Xf34BW4YvzNfACRLmmb7XRLa6XHdR+K9AlJlxneFfWYf6uhOzuzZVTjF/8KfndZANw==",
+ "version": "7.24.3",
+ "resolved": "https://registry.npmjs.org/@babel/core/-/core-7.24.3.tgz",
+ "integrity": "sha512-5FcvN1JHw2sHJChotgx8Ek0lyuh4kCKelgMTTqhYJJtloNvUfpAFMeNQUtdlIaktwrSV9LtCdqwk48wL2wBacQ==",
"dev": true,
"dependencies": {
"@ampproject/remapping": "^2.2.0",
- "@babel/code-frame": "^7.23.5",
- "@babel/generator": "^7.23.6",
+ "@babel/code-frame": "^7.24.2",
+ "@babel/generator": "^7.24.1",
"@babel/helper-compilation-targets": "^7.23.6",
"@babel/helper-module-transforms": "^7.23.3",
- "@babel/helpers": "^7.24.0",
- "@babel/parser": "^7.24.0",
+ "@babel/helpers": "^7.24.1",
+ "@babel/parser": "^7.24.1",
"@babel/template": "^7.24.0",
- "@babel/traverse": "^7.24.0",
+ "@babel/traverse": "^7.24.1",
"@babel/types": "^7.24.0",
"convert-source-map": "^2.0.0",
"debug": "^4.1.0",
@@ -218,14 +223,14 @@
}
},
"node_modules/@babel/generator": {
- "version": "7.23.6",
- "resolved": "https://registry.npmjs.org/@babel/generator/-/generator-7.23.6.tgz",
- "integrity": "sha512-qrSfCYxYQB5owCmGLbl8XRpX1ytXlpueOb0N0UmQwA073KZxejgQTzAmJezxvpwQD9uGtK2shHdi55QT+MbjIw==",
+ "version": "7.24.1",
+ "resolved": "https://registry.npmjs.org/@babel/generator/-/generator-7.24.1.tgz",
+ "integrity": "sha512-DfCRfZsBcrPEHUfuBMgbJ1Ut01Y/itOs+hY2nFLgqsqXd52/iSiVq5TITtUasIUgm+IIKdY2/1I7auiQOEeC9A==",
"dev": true,
"dependencies": {
- "@babel/types": "^7.23.6",
- "@jridgewell/gen-mapping": "^0.3.2",
- "@jridgewell/trace-mapping": "^0.3.17",
+ "@babel/types": "^7.24.0",
+ "@jridgewell/gen-mapping": "^0.3.5",
+ "@jridgewell/trace-mapping": "^0.3.25",
"jsesc": "^2.5.1"
},
"engines": {
@@ -270,9 +275,9 @@
}
},
"node_modules/@babel/helper-create-class-features-plugin": {
- "version": "7.23.7",
- "resolved": "https://registry.npmjs.org/@babel/helper-create-class-features-plugin/-/helper-create-class-features-plugin-7.23.7.tgz",
- "integrity": "sha512-xCoqR/8+BoNnXOY7RVSgv6X+o7pmT5q1d+gGcRlXYkI+9B31glE4jeejhKVpA04O1AtzOt7OSQ6VYKP5FcRl9g==",
+ "version": "7.24.1",
+ "resolved": "https://registry.npmjs.org/@babel/helper-create-class-features-plugin/-/helper-create-class-features-plugin-7.24.1.tgz",
+ "integrity": "sha512-1yJa9dX9g//V6fDebXoEfEsxkZHk3Hcbm+zLhyu6qVgYFLvmTALTeV+jNU9e5RnYtioBrGEOdoI2joMSNQ/+aA==",
"dev": true,
"dependencies": {
"@babel/helper-annotate-as-pure": "^7.22.5",
@@ -280,7 +285,7 @@
"@babel/helper-function-name": "^7.23.0",
"@babel/helper-member-expression-to-functions": "^7.23.0",
"@babel/helper-optimise-call-expression": "^7.22.5",
- "@babel/helper-replace-supers": "^7.22.20",
+ "@babel/helper-replace-supers": "^7.24.1",
"@babel/helper-skip-transparent-expression-wrappers": "^7.22.5",
"@babel/helper-split-export-declaration": "^7.22.6",
"semver": "^6.3.1"
@@ -391,22 +396,22 @@
}
},
"node_modules/@babel/helper-plugin-utils": {
- "version": "7.22.5",
- "resolved": "https://registry.npmjs.org/@babel/helper-plugin-utils/-/helper-plugin-utils-7.22.5.tgz",
- "integrity": "sha512-uLls06UVKgFG9QD4OeFYLEGteMIAa5kpTPcFL28yuCIIzsf6ZyKZMllKVOCZFhiZ5ptnwX4mtKdWCBE/uT4amg==",
+ "version": "7.24.0",
+ "resolved": "https://registry.npmjs.org/@babel/helper-plugin-utils/-/helper-plugin-utils-7.24.0.tgz",
+ "integrity": "sha512-9cUznXMG0+FxRuJfvL82QlTqIzhVW9sL0KjMPHhAOOvpQGL8QtdxnBKILjBqxlHyliz0yCa1G903ZXI/FuHy2w==",
"dev": true,
"engines": {
"node": ">=6.9.0"
}
},
"node_modules/@babel/helper-replace-supers": {
- "version": "7.22.20",
- "resolved": "https://registry.npmjs.org/@babel/helper-replace-supers/-/helper-replace-supers-7.22.20.tgz",
- "integrity": "sha512-qsW0In3dbwQUbK8kejJ4R7IHVGwHJlV6lpG6UA7a9hSa2YEiAib+N1T2kr6PEeUT+Fl7najmSOS6SmAwCHK6Tw==",
+ "version": "7.24.1",
+ "resolved": "https://registry.npmjs.org/@babel/helper-replace-supers/-/helper-replace-supers-7.24.1.tgz",
+ "integrity": "sha512-QCR1UqC9BzG5vZl8BMicmZ28RuUBnHhAMddD8yHFHDRH9lLTZ9uUPehX8ctVPT8l0TKblJidqcgUUKGVrePleQ==",
"dev": true,
"dependencies": {
"@babel/helper-environment-visitor": "^7.22.20",
- "@babel/helper-member-expression-to-functions": "^7.22.15",
+ "@babel/helper-member-expression-to-functions": "^7.23.0",
"@babel/helper-optimise-call-expression": "^7.22.5"
},
"engines": {
@@ -480,13 +485,13 @@
}
},
"node_modules/@babel/helpers": {
- "version": "7.24.0",
- "resolved": "https://registry.npmjs.org/@babel/helpers/-/helpers-7.24.0.tgz",
- "integrity": "sha512-ulDZdc0Aj5uLc5nETsa7EPx2L7rM0YJM8r7ck7U73AXi7qOV44IHHRAYZHY6iU1rr3C5N4NtTmMRUJP6kwCWeA==",
+ "version": "7.24.1",
+ "resolved": "https://registry.npmjs.org/@babel/helpers/-/helpers-7.24.1.tgz",
+ "integrity": "sha512-BpU09QqEe6ZCHuIHFphEFgvNSrubve1FtyMton26ekZ85gRGi6LrTF7zArARp2YvyFxloeiRmtSCq5sjh1WqIg==",
"dev": true,
"dependencies": {
"@babel/template": "^7.24.0",
- "@babel/traverse": "^7.24.0",
+ "@babel/traverse": "^7.24.1",
"@babel/types": "^7.24.0"
},
"engines": {
@@ -494,23 +499,24 @@
}
},
"node_modules/@babel/highlight": {
- "version": "7.23.4",
- "resolved": "https://registry.npmjs.org/@babel/highlight/-/highlight-7.23.4.tgz",
- "integrity": "sha512-acGdbYSfp2WheJoJm/EBBBLh/ID8KDc64ISZ9DYtBmC8/Q204PZJLHyzeB5qMzJ5trcOkybd78M4x2KWsUq++A==",
+ "version": "7.24.2",
+ "resolved": "https://registry.npmjs.org/@babel/highlight/-/highlight-7.24.2.tgz",
+ "integrity": "sha512-Yac1ao4flkTxTteCDZLEvdxg2fZfz1v8M4QpaGypq/WPDqg3ijHYbDfs+LG5hvzSoqaSZ9/Z9lKSP3CjZjv+pA==",
"dev": true,
"dependencies": {
"@babel/helper-validator-identifier": "^7.22.20",
"chalk": "^2.4.2",
- "js-tokens": "^4.0.0"
+ "js-tokens": "^4.0.0",
+ "picocolors": "^1.0.0"
},
"engines": {
"node": ">=6.9.0"
}
},
"node_modules/@babel/parser": {
- "version": "7.24.0",
- "resolved": "https://registry.npmjs.org/@babel/parser/-/parser-7.24.0.tgz",
- "integrity": "sha512-QuP/FxEAzMSjXygs8v4N9dvdXzEHN4W1oF3PxuWAtPo08UdM17u89RDMgjLn/mlc56iM0HlLmVkO/wgR+rDgHg==",
+ "version": "7.24.1",
+ "resolved": "https://registry.npmjs.org/@babel/parser/-/parser-7.24.1.tgz",
+ "integrity": "sha512-Zo9c7N3xdOIQrNip7Lc9wvRPzlRtovHVE4lkz8WEDr7uYh/GMQhSiIgFxGIArRHYdJE5kxtZjAf8rT0xhdLCzg==",
"bin": {
"parser": "bin/babel-parser.js"
},
@@ -578,12 +584,12 @@
}
},
"node_modules/@babel/plugin-syntax-jsx": {
- "version": "7.23.3",
- "resolved": "https://registry.npmjs.org/@babel/plugin-syntax-jsx/-/plugin-syntax-jsx-7.23.3.tgz",
- "integrity": "sha512-EB2MELswq55OHUoRZLGg/zC7QWUKfNLpE57m/S2yr1uEneIgsTgrSzXP3NXEsMkVn76OlaVVnzN+ugObuYGwhg==",
+ "version": "7.24.1",
+ "resolved": "https://registry.npmjs.org/@babel/plugin-syntax-jsx/-/plugin-syntax-jsx-7.24.1.tgz",
+ "integrity": "sha512-2eCtxZXf+kbkMIsXS4poTvT4Yu5rXiRa+9xGVT56raghjmBTKMpFNc9R4IDiB4emao9eO22Ox7CxuJG7BgExqA==",
"dev": true,
"dependencies": {
- "@babel/helper-plugin-utils": "^7.22.5"
+ "@babel/helper-plugin-utils": "^7.24.0"
},
"engines": {
"node": ">=6.9.0"
@@ -593,12 +599,12 @@
}
},
"node_modules/@babel/plugin-syntax-typescript": {
- "version": "7.23.3",
- "resolved": "https://registry.npmjs.org/@babel/plugin-syntax-typescript/-/plugin-syntax-typescript-7.23.3.tgz",
- "integrity": "sha512-9EiNjVJOMwCO+43TqoTrgQ8jMwcAd0sWyXi9RPfIsLTj4R2MADDDQXELhffaUx/uJv2AYcxBgPwH6j4TIA4ytQ==",
+ "version": "7.24.1",
+ "resolved": "https://registry.npmjs.org/@babel/plugin-syntax-typescript/-/plugin-syntax-typescript-7.24.1.tgz",
+ "integrity": "sha512-Yhnmvy5HZEnHUty6i++gcfH1/l68AHnItFHnaCv6hn9dNh0hQvvQJsxpi4BMBFN5DLeHBuucT/0DgzXif/OyRw==",
"dev": true,
"dependencies": {
- "@babel/helper-plugin-utils": "^7.22.5"
+ "@babel/helper-plugin-utils": "^7.24.0"
},
"engines": {
"node": ">=6.9.0"
@@ -608,13 +614,13 @@
}
},
"node_modules/@babel/plugin-transform-modules-commonjs": {
- "version": "7.23.3",
- "resolved": "https://registry.npmjs.org/@babel/plugin-transform-modules-commonjs/-/plugin-transform-modules-commonjs-7.23.3.tgz",
- "integrity": "sha512-aVS0F65LKsdNOtcz6FRCpE4OgsP2OFnW46qNxNIX9h3wuzaNcSQsJysuMwqSibC98HPrf2vCgtxKNwS0DAlgcA==",
+ "version": "7.24.1",
+ "resolved": "https://registry.npmjs.org/@babel/plugin-transform-modules-commonjs/-/plugin-transform-modules-commonjs-7.24.1.tgz",
+ "integrity": "sha512-szog8fFTUxBfw0b98gEWPaEqF42ZUD/T3bkynW/wtgx2p/XCP55WEsb+VosKceRSd6njipdZvNogqdtI4Q0chw==",
"dev": true,
"dependencies": {
"@babel/helper-module-transforms": "^7.23.3",
- "@babel/helper-plugin-utils": "^7.22.5",
+ "@babel/helper-plugin-utils": "^7.24.0",
"@babel/helper-simple-access": "^7.22.5"
},
"engines": {
@@ -625,15 +631,15 @@
}
},
"node_modules/@babel/plugin-transform-typescript": {
- "version": "7.23.6",
- "resolved": "https://registry.npmjs.org/@babel/plugin-transform-typescript/-/plugin-transform-typescript-7.23.6.tgz",
- "integrity": "sha512-6cBG5mBvUu4VUD04OHKnYzbuHNP8huDsD3EDqqpIpsswTDoqHCjLoHb6+QgsV1WsT2nipRqCPgxD3LXnEO7XfA==",
+ "version": "7.24.1",
+ "resolved": "https://registry.npmjs.org/@babel/plugin-transform-typescript/-/plugin-transform-typescript-7.24.1.tgz",
+ "integrity": "sha512-liYSESjX2fZ7JyBFkYG78nfvHlMKE6IpNdTVnxmlYUR+j5ZLsitFbaAE+eJSK2zPPkNWNw4mXL51rQ8WrvdK0w==",
"dev": true,
"dependencies": {
"@babel/helper-annotate-as-pure": "^7.22.5",
- "@babel/helper-create-class-features-plugin": "^7.23.6",
- "@babel/helper-plugin-utils": "^7.22.5",
- "@babel/plugin-syntax-typescript": "^7.23.3"
+ "@babel/helper-create-class-features-plugin": "^7.24.1",
+ "@babel/helper-plugin-utils": "^7.24.0",
+ "@babel/plugin-syntax-typescript": "^7.24.1"
},
"engines": {
"node": ">=6.9.0"
@@ -643,16 +649,16 @@
}
},
"node_modules/@babel/preset-typescript": {
- "version": "7.23.3",
- "resolved": "https://registry.npmjs.org/@babel/preset-typescript/-/preset-typescript-7.23.3.tgz",
- "integrity": "sha512-17oIGVlqz6CchO9RFYn5U6ZpWRZIngayYCtrPRSgANSwC2V1Jb+iP74nVxzzXJte8b8BYxrL1yY96xfhTBrNNQ==",
+ "version": "7.24.1",
+ "resolved": "https://registry.npmjs.org/@babel/preset-typescript/-/preset-typescript-7.24.1.tgz",
+ "integrity": "sha512-1DBaMmRDpuYQBPWD8Pf/WEwCrtgRHxsZnP4mIy9G/X+hFfbI47Q2G4t1Paakld84+qsk2fSsUPMKg71jkoOOaQ==",
"dev": true,
"dependencies": {
- "@babel/helper-plugin-utils": "^7.22.5",
- "@babel/helper-validator-option": "^7.22.15",
- "@babel/plugin-syntax-jsx": "^7.23.3",
- "@babel/plugin-transform-modules-commonjs": "^7.23.3",
- "@babel/plugin-transform-typescript": "^7.23.3"
+ "@babel/helper-plugin-utils": "^7.24.0",
+ "@babel/helper-validator-option": "^7.23.5",
+ "@babel/plugin-syntax-jsx": "^7.24.1",
+ "@babel/plugin-transform-modules-commonjs": "^7.24.1",
+ "@babel/plugin-transform-typescript": "^7.24.1"
},
"engines": {
"node": ">=6.9.0"
@@ -685,18 +691,18 @@
}
},
"node_modules/@babel/traverse": {
- "version": "7.24.0",
- "resolved": "https://registry.npmjs.org/@babel/traverse/-/traverse-7.24.0.tgz",
- "integrity": "sha512-HfuJlI8qq3dEDmNU5ChzzpZRWq+oxCZQyMzIMEqLho+AQnhMnKQUzH6ydo3RBl/YjPCuk68Y6s0Gx0AeyULiWw==",
+ "version": "7.24.1",
+ "resolved": "https://registry.npmjs.org/@babel/traverse/-/traverse-7.24.1.tgz",
+ "integrity": "sha512-xuU6o9m68KeqZbQuDt2TcKSxUw/mrsvavlEqQ1leZ/B+C9tk6E4sRWy97WaXgvq5E+nU3cXMxv3WKOCanVMCmQ==",
"dev": true,
"dependencies": {
- "@babel/code-frame": "^7.23.5",
- "@babel/generator": "^7.23.6",
+ "@babel/code-frame": "^7.24.1",
+ "@babel/generator": "^7.24.1",
"@babel/helper-environment-visitor": "^7.22.20",
"@babel/helper-function-name": "^7.23.0",
"@babel/helper-hoist-variables": "^7.22.5",
"@babel/helper-split-export-declaration": "^7.22.6",
- "@babel/parser": "^7.24.0",
+ "@babel/parser": "^7.24.1",
"@babel/types": "^7.24.0",
"debug": "^4.3.1",
"globals": "^11.1.0"
@@ -1080,6 +1086,24 @@
"@iconify/types": "*"
}
},
+ "node_modules/@iconify-json/material-symbols": {
+ "version": "1.1.76",
+ "resolved": "https://registry.npmjs.org/@iconify-json/material-symbols/-/material-symbols-1.1.76.tgz",
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+ },
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+ "url": "https://github.com/sponsors/sindresorhus"
+ }
+ },
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+ "version": "0.58.7",
+ "resolved": "https://registry.npmjs.org/unocss/-/unocss-0.58.7.tgz",
+ "integrity": "sha512-WZEG5+RWlMvuMX8qOpZI9PAwBlFpRMnGlOtQV3M6BHsUbEPvC7IPx1fr4I22XizctRfNftUG3MWe5l74CcoD7Q==",
+ "dev": true,
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+ "@unocss/cli": "0.58.7",
+ "@unocss/core": "0.58.7",
+ "@unocss/extractor-arbitrary-variants": "0.58.7",
+ "@unocss/postcss": "0.58.7",
+ "@unocss/preset-attributify": "0.58.7",
+ "@unocss/preset-icons": "0.58.7",
+ "@unocss/preset-mini": "0.58.7",
+ "@unocss/preset-tagify": "0.58.7",
+ "@unocss/preset-typography": "0.58.7",
+ "@unocss/preset-uno": "0.58.7",
+ "@unocss/preset-web-fonts": "0.58.7",
+ "@unocss/preset-wind": "0.58.7",
+ "@unocss/reset": "0.58.7",
+ "@unocss/transformer-attributify-jsx": "0.58.7",
+ "@unocss/transformer-attributify-jsx-babel": "0.58.7",
+ "@unocss/transformer-compile-class": "0.58.7",
+ "@unocss/transformer-directives": "0.58.7",
+ "@unocss/transformer-variant-group": "0.58.7",
+ "@unocss/vite": "0.58.7"
+ },
+ "engines": {
+ "node": ">=14"
+ },
+ "funding": {
+ "url": "https://github.com/sponsors/antfu"
+ },
+ "peerDependencies": {
+ "@unocss/webpack": "0.58.7",
+ "vite": "^2.9.0 || ^3.0.0-0 || ^4.0.0 || ^5.0.0-0"
+ },
+ "peerDependenciesMeta": {
+ "@unocss/webpack": {
+ "optional": true
+ },
+ "vite": {
+ "optional": true
+ }
+ }
+ },
"node_modules/@unocss/postcss": {
"version": "0.58.5",
"resolved": "https://registry.npmjs.org/@unocss/postcss/-/postcss-0.58.5.tgz",
@@ -3562,19 +4005,28 @@
}
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+ "version": "0.58.7",
+ "resolved": "https://registry.npmjs.org/@unocss/preset-icons/-/preset-icons-0.58.7.tgz",
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"dev": true,
"dependencies": {
"@iconify/utils": "^2.1.22",
- "@unocss/core": "0.58.5",
- "ofetch": "^1.3.3"
+ "@unocss/core": "0.58.7",
+ "ofetch": "^1.3.4"
},
"funding": {
"url": "https://github.com/sponsors/antfu"
}
},
+ "node_modules/@unocss/preset-icons/node_modules/@unocss/core": {
+ "version": "0.58.7",
+ "resolved": "https://registry.npmjs.org/@unocss/core/-/core-0.58.7.tgz",
+ "integrity": "sha512-Df5ytibV0MB7kWLggzLHsJUj08Of2oqXmPg7QjRUghMvCT3dl2LUIZXiztYPMH0F4x0cPebNoa/pavNt8xz9eQ==",
+ "dev": true,
+ "funding": {
+ "url": "https://github.com/sponsors/antfu"
+ }
+ },
"node_modules/@unocss/preset-mini": {
"version": "0.58.5",
"resolved": "https://registry.npmjs.org/@unocss/preset-mini/-/preset-mini-0.58.5.tgz",
@@ -3775,6 +4227,8 @@
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"dev": true,
+ "optional": true,
+ "peer": true,
"dependencies": {
"@ampproject/remapping": "^2.2.1",
"@rollup/pluginutils": "^5.1.0",
@@ -6615,9 +7069,9 @@
}
},
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+ "version": "2.0.3",
+ "resolved": "https://registry.npmjs.org/destr/-/destr-2.0.3.tgz",
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"dev": true
},
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@@ -9231,9 +9685,9 @@
}
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+ "version": "1.6.4",
+ "resolved": "https://registry.npmjs.org/node-fetch-native/-/node-fetch-native-1.6.4.tgz",
+ "integrity": "sha512-IhOigYzAKHd244OC0JIMIUrjzctirCmPkaIfhDeGcEETWof5zKYUW7e7MYvChGWh/4CJeXEgsRyGzuF334rOOQ==",
"dev": true
},
"node_modules/node-forge": {
@@ -10732,14 +11186,14 @@
}
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+ "version": "1.3.4",
+ "resolved": "https://registry.npmjs.org/ofetch/-/ofetch-1.3.4.tgz",
+ "integrity": "sha512-KLIET85ik3vhEfS+3fDlc/BAZiAp+43QEC/yCo5zkNoY2YaKvNkOaFr/6wCFgFH1kuYQM5pMNi0Tg8koiIemtw==",
"dev": true,
"dependencies": {
- "destr": "^2.0.1",
- "node-fetch-native": "^1.4.0",
- "ufo": "^1.3.0"
+ "destr": "^2.0.3",
+ "node-fetch-native": "^1.6.3",
+ "ufo": "^1.5.3"
}
},
"node_modules/ohash": {
@@ -11239,9 +11693,9 @@
}
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+ "version": "8.4.38",
+ "resolved": "https://registry.npmjs.org/postcss/-/postcss-8.4.38.tgz",
+ "integrity": "sha512-Wglpdk03BSfXkHoQa3b/oulrotAkwrlLDRSOb9D0bN86FdRyE9lppSp33aHNPgBa0JKCoB+drFLZkQoRRYae5A==",
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{
"type": "opencollective",
@@ -11259,7 +11713,7 @@
"dependencies": {
"nanoid": "^3.3.7",
"picocolors": "^1.0.0",
- "source-map-js": "^1.0.2"
+ "source-map-js": "^1.2.0"
},
"engines": {
"node": "^10 || ^12 || >=14"
@@ -12696,9 +13150,9 @@
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+ "version": "1.2.0",
+ "resolved": "https://registry.npmjs.org/source-map-js/-/source-map-js-1.2.0.tgz",
+ "integrity": "sha512-itJW8lvSA0TXEphiRoawsCksnlf8SyvmFzIhltqAHluXd88pkCd+cXJVHTDwdCr0IzwptSm035IHQktUu1QUMg==",
"engines": {
"node": ">=0.10.0"
}
@@ -13321,9 +13775,9 @@
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+ "version": "1.5.3",
+ "resolved": "https://registry.npmjs.org/ufo/-/ufo-1.5.3.tgz",
+ "integrity": "sha512-Y7HYmWaFwPUmkoQCUIAYpKqkOf+SbVj/2fJJZ4RJMCfZp0rTGwRbzQD+HghfnhKOjL9E01okqz+ncJskGYfBNw==",
"dev": true
},
"node_modules/ultrahtml": {
@@ -13569,10 +14023,24 @@
}
}
},
+ "node_modules/unocss/node_modules/@unocss/preset-icons": {
+ "version": "0.58.5",
+ "resolved": "https://registry.npmjs.org/@unocss/preset-icons/-/preset-icons-0.58.5.tgz",
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+ "dev": true,
+ "dependencies": {
+ "@iconify/utils": "^2.1.22",
+ "@unocss/core": "0.58.5",
+ "ofetch": "^1.3.3"
+ },
+ "funding": {
+ "url": "https://github.com/sponsors/antfu"
+ }
+ },
"node_modules/unplugin": {
- "version": "1.9.0",
- "resolved": "https://registry.npmjs.org/unplugin/-/unplugin-1.9.0.tgz",
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+ "version": "1.10.0",
+ "resolved": "https://registry.npmjs.org/unplugin/-/unplugin-1.10.0.tgz",
+ "integrity": "sha512-CuZtvvO8ua2Wl+9q2jEaqH6m3DoQ38N7pvBYQbbaeNlWGvK2l6GHiKi29aIHDPoSxdUzQ7Unevf1/ugil5X6Pg==",
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diff --git a/frontend/package.json b/frontend/package.json
index 1b81e60848dc43dd017ef89c5607b9dc1b0cb3d7..3d3837b15214fdebc2a3d654a832afe529ea4eed 100644
--- a/frontend/package.json
+++ b/frontend/package.json
@@ -10,10 +10,15 @@
"postinstall": "nuxt prepare"
},
"devDependencies": {
+ "@iconify-json/material-symbols": "^1.1.76",
+ "@iconify-json/mdi": "^1.1.64",
+ "@iconify-json/tabler": "^1.1.109",
"@nuxt/devtools": "latest",
"@nuxtjs/plausible": "^0.2.4",
"@nuxtjs/seo": "^2.0.0-rc.9",
"@types/node": "^20.11.6",
+ "@unocss/nuxt": "^0.58.7",
+ "@unocss/preset-icons": "^0.58.7",
"nuxt": "^3.9.3",
"nuxt-security": "^0.14.2",
"vuetify-nuxt-module": "^0.10.2"
diff --git a/frontend/pages/index.vue b/frontend/pages/index.vue
index 82f4e13d1d5886da3720c153520338b9dd8c7fef..b55b447139c3a6aefca446b4be478feaf8157e23 100644
--- a/frontend/pages/index.vue
+++ b/frontend/pages/index.vue
@@ -4,87 +4,115 @@ function resetError(error) {
navigateTo("/")
}
+
</script>
<template>
<v-row>
<v-col>
<v-card flat color="background">
- <v-card-title>Defense Finder</v-card-title>
- <v-card-text>
- Welcome on DefenseFinder's web page. On this site, you can freely use (without any login) the DefenseFinder
- webservice (see below) and get help to navigate the ever expanding world of defense systems.
- There is a <a href="https://defensefinder.mdmlab.fr/wiki/">collaborative knowledge base</a> of defense systems
- that provide
- essential information
- on any given defense systems. You can further explore defense systems across <a
- href="https://defensefinder.mdmlab.fr/wiki/refseq/">all
- fully sequenced
- bacteria</a> and get insight on the <a href="https://defensefinder.mdmlab.fr/wiki/structure/">
- structure</a> of each protein
- of those systems
- thanks
- to protein structure prediction using alphafold for monomer and dimers.
- <p>
- We encourage you to contribute to this knowledge database, and if you see any non up-to-date information,
- let
- us
- know, or <a href="https://defensefinder.mdmlab.fr/wiki/help/contributing-wiki/">contribute yourself</a>
- </p>
- </v-card-text>
-
+ <v-card flat color="transparent">
+ <v-card-item>
+ <v-card-title>Defense Finder</v-card-title>
+ </v-card-item>
+ <v-card-text class="py-1">
+ Welcome on DefenseFinder's web page. On this site, you can freely use (without any login) the DefenseFinder
+ webservice (see below) and get help to navigate the ever expanding world of defense systems.
+ There is a <a class="text-primary" :href="toValue(useWikiUrl('/').wikiUrl)">collaborative knowledge base</a>
+ of defense systems
+ that provide
+ essential information
+ on any given defense systems. You can further explore defense systems across <a class="text-primary"
+ :href="toValue(useWikiUrl('/refseq').wikiUrl)">all
+ fully sequenced
+ bacteria</a> and get insight on the <a class="text-primary"
+ :href="toValue(useWikiUrl('/structure').wikiUrl)">
+ structure</a> of each protein
+ of those systems
+ thanks
+ to protein structure prediction using alphafold for monomer and dimers.
+ <p>
+ We encourage you to contribute to this knowledge database, and if you see any non up-to-date information,
+ let
+ us
+ know, or <a class="text-primary" :href="toValue(useWikiUrl('/help/contributing-wiki').wikiUrl)">contribute
+ yourself</a>
+ </p>
+ </v-card-text>
+ </v-card>
- <v-card-text>
- If you are using DefenseFinder please cite:
- <v-list color="transparent">
- <v-list-item color="transparent"
- title="Systematic and quantitative view of the antiviral arsenal of prokaryotes"
- subtitle="Tesson F., Hervé A. , Touchon M., d'Humières C., Cury J., Bernheim A., Nature Communication, 2022">
- </v-list-item>
- <v-list-item color="transparent"
- title="MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes"
- subtitle="Néron, B; Denise, R; Coluzzi, C; Touchon, M; Rocha, E.P.C.; Abby, S.S., Peer Community Journal, 2023">
- </v-list-item>
+ <v-card flat color="transparent">
+ <v-card-text>
+ <v-alert border="start" color="info" variant="tonal">
+ <v-alert-title>Defense Finder Webservice</v-alert-title>
+ <p> Run Defense Finder analysis. It accepts both proteic and nucleic fasta files as inputs. The format is
+ guessed
+ automatically</p>
- </v-list>
- </v-card-text>
- <v-card-text>
- <p>
- The list of all systems can be found <a
- href="https://defensefinder.mdmlab.fr/wiki/defense-systems/">here</a>
- </p>
- <p>
- Any issues concerning DefenseFinder, the software, can be raised here :
- <a href="https://github.com/mdmparis/defense-finder"
- target="_blank">https://github.com/mdmparis/defense-finder</a>
- </p>
- Any issues concerning this website can be raised here : <a href="https://gitlab.pasteur.fr/mdm-lab/wiki"
- target="_blank">https://gitlab.pasteur.fr/mdm-lab/wiki</a>
- <p>
- This site uses session cookies only to save your past analyses for a month.
- </p>
- </v-card-text>
+ <p>A Run usually takes a couple of minutes. You can find your last run in the Analyses panel on the left.
+ </p>
+ <p>Multiple analyses can be run at the same time, they can all be found in the Analyses panel.</p>
- <v-card-text>
- <v-alert border="start" color="info" variant="tonal">
- <v-alert-title>Defense Finder</v-alert-title>
- <p> Run Defense Finder analysis. It accepts both proteic and nucleic fasta files as inputs. The format is
- guessed
- automatically</p>
+ <p>Errors most often arise from incorrect input formats: make sure you are using a valid fasta file as
+ input.</p>
+ </v-alert>
+ </v-card-text>
+ <NuxtErrorBoundary>
+ <SubmitAnalysis></SubmitAnalysis>
+ <template #error="{ error }">
+ <ErrorAlert :error="error"></ErrorAlert>
+ </template>
+ </NuxtErrorBoundary>
+ </v-card>
+ <v-card flat color="transparent">
+ <v-card-text class="py-1">
+ <v-row>
+ <v-col cols="12">
+ <v-card variant="text">
+ <v-list>
+ <v-list-subheader>If you are using DefenseFinder please cite:</v-list-subheader>
+ <v-list-item href="https://doi.org/10.1038/s41467-022-30269-9" target="_blank"
+ title="Systematic and quantitative view of the antiviral arsenal of prokaryotes"
+ subtitle="Tesson F., Hervé A. , Touchon M., d'Humières C., Cury J., Bernheim A., Nature Communication, 2022">
+ </v-list-item>
+ <v-list-item href="https://doi.org/10.24072/pcjournal.250" target="_blank"
+ title="MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes"
+ subtitle="Néron, B; Denise, R; Coluzzi, C; Touchon, M; Rocha, E.P.C.; Abby, S.S., Peer Community Journal, 2023">
+ </v-list-item>
+ </v-list>
+ </v-card>
+ </v-col></v-row>
+ </v-card-text>
+ </v-card>
+ <v-card flat color="transparent">
+ <v-card-text>
+ <v-row>
+ <v-col cols="12" md="4">
+ <v-card title="List defense systems" class="mx-auto" rel="noopener"
+ :href="toValue(useWikiUrl('/defense-systems').wikiUrl)" color="primary" variant="tonal">
+ <template v-slot:prepend>
+ <v-icon icon="i-tabler:virus-off"></v-icon>
+ </template>
- <p>A Run usually takes a couple of minutes. You can find your last run in the Analyses panel on the left.
- </p>
- <p>Multiple analyses can be run at the same time, they can all be found in the Analyses panel.</p>
+ <v-card-text>The list of all systems describes in the knowledge database can be found here.
+ </v-card-text>
- <p>Errors most often arise from incorrect input formats: make sure you are using a valid fasta file as
- input.</p>
- </v-alert>
- </v-card-text>
- <NuxtErrorBoundary>
- <SubmitAnalysis></SubmitAnalysis>
- <template #error="{ error }">
- <ErrorAlert :error="error"></ErrorAlert>
- </template>
- </NuxtErrorBoundary>
+ </v-card>
+ </v-col>
+ <v-col cols="12" md="4">
+ <v-card prepend-icon="mdi-github" href="https://github.com/mdmparis/defense-finder" target="_blank"
+ rel="noopener" color="primary" variant="tonal" class="mx-auto" title="DefenseFinder issues">
+ <v-card-text>Any issues concerning DefenseFinder, the
+ software, can be raised here.</v-card-text></v-card>
+ </v-col>
+ <v-col cols="12" md="4">
+ <v-card prepend-icon="mdi-gitlab" href="https://gitlab.pasteur.fr/mdm-lab/wiki" target="_blank"
+ rel="noopener" color="primary" variant="tonal" class="mx-auto" title="Wiki issues">
+ <v-card-text>Any issues concerning the knowledge database website can be raised
+ here.</v-card-text></v-card>
+ </v-col>
+ </v-row>
+ </v-card-text>
+ </v-card>
</v-card>
</v-col>
</v-row>