Skip to content
Snippets Groups Projects
title: Rst_2TM_1TM_TIR
layout: article
tableColumns:
    article:
      doi: 10.1016/j.chom.2022.02.018
      abstract: |
        Bacteria carry diverse genetic systems to defend against viral infection, some of which are found within prophages where they inhibit competing viruses. Phage satellites pose additional pressures on phages by hijacking key viral elements to their own benefit. Here, we show that E. coli P2-like phages and their parasitic P4-like satellites carry hotspots of genetic variation containing reservoirs of anti-phage systems. We validate the activity of diverse systems and describe PARIS, an abortive infection system triggered by a phage-encoded anti-restriction protein. Antiviral hotspots participate in inter-viral competition and shape dynamics between the bacterial host, P2-like phages, and P4-like satellites. Notably, the anti-phage activity of satellites can benefit the helper phage during competition with virulent phages, turning a parasitic relationship into a mutualistic one. Anti-phage hotspots are present across distant species and constitute a substantial source of systems that participate in the competition between mobile genetic elements.
    Sensor: Unknown
    Activator: Unknown
    Effector: Unknown
    PFAM: PF13676
contributors:
    - Alba Herrero del Valle

relevantAbstracts:
    - doi: 10.1016/j.chom.2022.02.018

Rst_2TM_1TM_TIR

Description

The Rst_2TM_1TM_TIR system is carried by the P2-like phage AC1 and protects Escherichia coli C against lambda, LF82_P8 and P2 phages. This system is composed of three proteins, Rst_TIR_tm, that contains a TIR (Toll/interleukin-1 receptor) domain, Rst_1TM_TIR, that contains a transmembrane helix (TM) and Rst_2TM_TIR, that contains two TMs :ref{doi=10.1016/j.chom.2022.02.018}. Rousset et al. suggested that the TIR containing protein could generate a nucleotide messenger that in turn could activate the associated transmembrane proteins.

Molecular mechanisms

As far as we are aware, the molecular mechanism is unknown.

Example of genomic structure

The Rst_2TM_1TM_TIR is composed of 3 proteins: Rst_2TM_TIR, Rst_TIR_tm and Rst_1TM_TIR.

Here is an example found in the RefSeq database:

rst_2tm_1tm_tir

The Rst_2TM_1TM_TIR system in Escherichia coli (GCF_004006575.1, NZ_CP034787) is composed of 3 proteins Rst_TIR_tm (WP_023140578.1) Rst_1TM_TIR (WP_001534953.1) Rst_2TM_TIR (WP_023140577.1)

Distribution of the system among prokaryotes

Among the 22,803 complete genomes of RefSeq, the Rst_2TM_1TM_TIR is detected in 2 genomes (0.01 %).

The system was detected in 1 different species.

rst_2tm_1tm_tir

Proportion of genome encoding the Rst_2TM_1TM_TIR system for the 14 phyla with more than 50 genomes in the RefSeq database.

Structure

Rst_2TM_1TM_TIR

::molstar-pdbe-plugin

height: 700 dataUrl: /rst_2tm_1tm_tir/Rst_2TM_1TM_TIR,Rst_2TM_1TM_TIR__Rst_1TM_TIR,0,V-plddts_90.66226.pdb

::

::molstar-pdbe-plugin

height: 700 dataUrl: /rst_2tm_1tm_tir/Rst_2TM_1TM_TIR,Rst_2TM_1TM_TIR__Rst_2TM_TIR,0,V-plddts_78.12882.pdb

::

::molstar-pdbe-plugin

height: 700 dataUrl: /rst_2tm_1tm_tir/Rst_2TM_1TM_TIR,Rst_2TM_1TM_TIR__Rst_TIR_tm,0,V-plddts_67.05466.pdb

::

Experimental validation

graph LR; Rousset_2022[Rousset et al., 2022] --> Origin_0 Origin_0[Escherichia coli C WP_001534952.1, WP_001534953.1, WP_001534955.1] --> Expressed_0[Escherichia coli C] Expressed_0[Escherichia coli C] ----> Lambda & LF82_P8 & P2 & SIAC10 & SID07 & DC1 & AC1 subgraph Title1[Reference] Rousset_2022 end subgraph Title2[System origin] Origin_0 end subgraph Title3[Expression species] Expressed_0 end subgraph Title4[Protects against] Lambda LF82_P8 P2 SIAC10 SID07 DC1 AC1 end style Title1 fill:none,stroke:none,stroke-width:none style Title2 fill:none,stroke:none,stroke-width:none style Title3 fill:none,stroke:none,stroke-width:none style Title4 fill:none,stroke:none,stroke-width:none