From 031015b9b5dc6ecc04beb35b75045623b689f0fa Mon Sep 17 00:00:00 2001
From: Remi PLANEL <rplanel@pasteur.fr>
Date: Thu, 25 Apr 2024 19:24:21 +0200
Subject: [PATCH] remove forbidden df model genes
---
packages/df-wiki-cli/df_wiki_cli/content/main.py | 6 +++++-
packages/df-wiki-cli/pyproject.toml | 2 +-
2 files changed, 6 insertions(+), 2 deletions(-)
diff --git a/packages/df-wiki-cli/df_wiki_cli/content/main.py b/packages/df-wiki-cli/df_wiki_cli/content/main.py
index a7104381..c3373ef5 100644
--- a/packages/df-wiki-cli/df_wiki_cli/content/main.py
+++ b/packages/df-wiki-cli/df_wiki_cli/content/main.py
@@ -304,7 +304,11 @@ def system_operon_structure(
with open(def_path["path"]) as file:
for event, elem in ET.iterparse(file, events=("start", "end")):
if event == "start":
- if elem.tag == "gene" and not in_exchangeables:
+ if (
+ elem.tag == "gene"
+ and not in_exchangeables
+ and elem.attrib["presence"] != "forbidden"
+ ):
current_gene = {
"system": system,
"subsystem": subsystem,
diff --git a/packages/df-wiki-cli/pyproject.toml b/packages/df-wiki-cli/pyproject.toml
index 885575df..db1e9ac2 100644
--- a/packages/df-wiki-cli/pyproject.toml
+++ b/packages/df-wiki-cli/pyproject.toml
@@ -1,6 +1,6 @@
[tool.poetry]
name = "df-wiki-cli"
-version = "0.2.0"
+version = "0.2.1"
description = ""
authors = ["Remi PLANEL <rplanel@pasteur.fr>"]
readme = "README.md"
--
GitLab