From 05f32ce8a50ff09b49274ee432c33b21aa588cda Mon Sep 17 00:00:00 2001
From: ftesson <florian.tesson@cri-paris.org>
Date: Mon, 22 Jan 2024 13:09:59 +0100
Subject: [PATCH] ftesson_abir_good
---
content/3.defense-systems/abir.md | 21 +++++++++++++++++++--
1 file changed, 19 insertions(+), 2 deletions(-)
diff --git a/content/3.defense-systems/abir.md b/content/3.defense-systems/abir.md
index 3bb99407..d0c32de0 100644
--- a/content/3.defense-systems/abir.md
+++ b/content/3.defense-systems/abir.md
@@ -10,12 +10,29 @@ tableColumns:
Activator: Unknown
Effector: Unknown
PFAM: PF00176, PF00271, PF04545, PF04851, PF13091
+contributors:
+ - Florian Tesson
relevantAbstracts:
- - doi: 10.1023/A:1002027321171
- - doi: 10.1016/j.mib.2005.06.006
+ - doi: 10.1023/A:1002027321171
+ - doi: 10.1016/j.mib.2005.06.006
+ - doi: 10.1128/aem.66.6.2647-2651.2000
---
# AbiR
+
+## Description
+AbiR is a defense system discovered in 2000 :ref{doi=10.1128/aem.66.6.2647-2651.2000}.
+
+AbiR is one of the so-called "Abi" systems for "Abortive infection" discovered in the 90's in research related to the dairy industry :ref{doi=10.1016/j.mib.2005.06.006}. AbiR is classified as abortive infection in :ref{doi=10.1016/j.mib.2023.102312}.
+
+AbiR is composed of 3 genes: AbiRa, AbiRb, AbiRc.
+AbiRa encodes a sigma70 RNA polymerase subunit. AbiRb as homology with ParB nuclease domain according to HHpred.
+AbiRc has two different domains: a N_terminal PLD domain (PF13091) and at the C term an SNF2 DNA dependant ATPase.
+
+## Molecular mechanism
+
+As far as we are aware, the molecular mechanism is unknown.
+
## Example of genomic structure
The AbiR is composed of 3 proteins: AbiRa, AbiRb and AbiRc.
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