diff --git a/content/2.defense-systems/abi2.md b/content/2.defense-systems/abi2.md index b709fb525907ea158238c6672a32548d038e9c5d..f558bdc4687998096bd08f43af2fb96939939847 100644 --- a/content/2.defense-systems/abi2.md +++ b/content/2.defense-systems/abi2.md @@ -6,7 +6,7 @@ The Abi2 system is composed of one protein: Abi_2. Here is an example found in the RefSeq database: - +{width=750px} Abi2 system in the genome of *Clostridium butyricum* (GCF_014131795.1) is composed of 1 protein: Abi_2 (WP_035763709.1). @@ -16,7 +16,7 @@ The Abi2 system is present in a total of 176 different species. Among the 22k complete genomes of RefSeq, this system is present in 1210 genomes (5.3 %). - +{width=750px} *Proportion of genome encoding the Abi2 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/abia.md b/content/2.defense-systems/abia.md index 4329f7f69e383ca594da154e3f88a793b9410f4a..139f6e0a4796a9c78fc0fb62bb20131358fe38d8 100644 --- a/content/2.defense-systems/abia.md +++ b/content/2.defense-systems/abia.md @@ -6,11 +6,11 @@ The AbiA system have been describe in a total of 2 subsystems. Here is some example found in the RefSeq database: - +{width=750px} AbiA_large subsystem in the genome of *Lactobacillus amylovorus* (GCF_002706375.1) is composed of 1 protein: AbiA_large (WP_056940268.1). - +{width=750px} AbiA_small subsystem in the genome of *Mesobacillus foraminis* (GCF_003667765.1) is composed of 2 proteins: AbiA_small (WP_121614402.1)and, AbiA_SLATT (WP_121614403.1). @@ -20,7 +20,7 @@ The AbiA system is present in a total of 35 different species. Among the 22k complete genomes of RefSeq, this system is present in 50 genomes (0.2 %). - +{width=750px} *Proportion of genome encoding the AbiA system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* diff --git a/content/2.defense-systems/abib.md b/content/2.defense-systems/abib.md index 99b008ddfd0a4375275874dac475f52129604da9..c87bbdb7cc717968cf617dcbae7041258a717fee 100644 --- a/content/2.defense-systems/abib.md +++ b/content/2.defense-systems/abib.md @@ -6,7 +6,7 @@ The AbiB system is composed of one protein: AbiB. Here is an example found in the RefSeq database: - +{width=750px} AbiB system in the genome of *Lactococcus lactis* (GCF_020221755.1) is composed of 1 protein: AbiB (WP_047687114.1). @@ -16,7 +16,7 @@ The AbiB system is present in a total of 5 different species. Among the 22k complete genomes of RefSeq, this system is present in 13 genomes (0.1 %). - +{width=750px} *Proportion of genome encoding the AbiB system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/abic.md b/content/2.defense-systems/abic.md index c75c585b9d2f9814f0717c2ced12d36c32315b12..c98ac6f59bd64492e0e703a736594342708d8b84 100644 --- a/content/2.defense-systems/abic.md +++ b/content/2.defense-systems/abic.md @@ -6,7 +6,7 @@ The AbiC system is composed of one protein: AbiC. Here is an example found in the RefSeq database: - +{width=750px} AbiC system in the genome of *Enterococcus faecium* (GCF_012933295.2) is composed of 1 protein: AbiC (WP_098388098.1). @@ -16,7 +16,7 @@ The AbiC system is present in a total of 110 different species. Among the 22k complete genomes of RefSeq, this system is present in 196 genomes (0.9 %). - +{width=750px} *Proportion of genome encoding the AbiC system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/abid.md b/content/2.defense-systems/abid.md index b475fd0b2694869b3e36d534e819c84a51b3223a..63f4c4e7251034416202156465fb0f66a64ae648 100644 --- a/content/2.defense-systems/abid.md +++ b/content/2.defense-systems/abid.md @@ -6,7 +6,7 @@ The AbiD system is composed of one protein: AbiD. Here is an example found in the RefSeq database: - +{width=750px} AbiD system in the genome of *Lachnospira eligens* (GCF_020735745.1) is composed of 1 protein: AbiD (WP_041688924.1). @@ -16,7 +16,7 @@ The AbiD system is present in a total of 874 different species. Among the 22k complete genomes of RefSeq, this system is present in 2748 genomes (12.1 %). - +{width=750px} *Proportion of genome encoding the AbiD system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/abie.md b/content/2.defense-systems/abie.md index 6589b00a179145201c16d95b72a9734ba50267b2..14c4d968a67582439de83f4ee943e7d0be8cc5ad 100644 --- a/content/2.defense-systems/abie.md +++ b/content/2.defense-systems/abie.md @@ -18,7 +18,7 @@ The AbiE system is composed of 2 proteins: AbiEi_1 and, AbiEii. Here is an example found in the RefSeq database: - +{width=750px} AbiE system in the genome of *Desulfuromonas versatilis* (GCF_019704135.1) is composed of 2 proteins: AbiEi_1 (WP_221251730.1)and, AbiEii (WP_221251731.1). @@ -28,7 +28,7 @@ The AbiE system is present in a total of 962 different species. Among the 22k complete genomes of RefSeq, this system is present in 3742 genomes (16.4 %). - +{width=750px} *Proportion of genome encoding the AbiE system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/abig.md b/content/2.defense-systems/abig.md index 1ecd3d72a5bc840cb90b5bebfe0ee9fc4e68011c..e3b933b050807ab7d21ad005d2a6a934a7794ad6 100644 --- a/content/2.defense-systems/abig.md +++ b/content/2.defense-systems/abig.md @@ -6,7 +6,7 @@ The AbiG system is composed of 2 proteins: AbiGi and, AbiGii. Here is an example found in the RefSeq database: - +{width=750px} AbiG system in the genome of *Streptococcus mutans* (GCF_009738105.1) is composed of 2 proteins: AbiGi (WP_002266883.1)and, AbiGii (WP_002266884.1). @@ -16,7 +16,7 @@ The AbiG system is present in a total of 23 different species. Among the 22k complete genomes of RefSeq, this system is present in 33 genomes (0.1 %). - +{width=750px} *Proportion of genome encoding the AbiG system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/abih.md b/content/2.defense-systems/abih.md index 6176dc129047aa9a7dc08966dc655b80d5aca7e5..507f63d063b911fae12bd32f28a6721255e71b4a 100644 --- a/content/2.defense-systems/abih.md +++ b/content/2.defense-systems/abih.md @@ -8,7 +8,7 @@ The AbiH system is composed of one protein: AbiH. Here is an example found in the RefSeq database: - +{width=750px} AbiH system in the genome of *Agrobacterium tumefaciens* (GCF_005221405.1) is composed of 1 protein: AbiH (WP_045021548.1). @@ -18,7 +18,7 @@ The AbiH system is present in a total of 408 different species. Among the 22k complete genomes of RefSeq, this system is present in 1277 genomes (5.6 %). - +{width=750px} *Proportion of genome encoding the AbiH system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/abii.md b/content/2.defense-systems/abii.md index 057825bae6716d6dc1813acff9f726475a4b6a0f..354e81238282aec7d9f2a22dcb3d586e6e9d2716 100644 --- a/content/2.defense-systems/abii.md +++ b/content/2.defense-systems/abii.md @@ -8,7 +8,7 @@ The AbiI system is composed of one protein: AbiI. Here is an example found in the RefSeq database: - +{width=750px} AbiI system in the genome of *Enterococcus faecalis* (GCF_002814115.1) is composed of 1 protein: AbiI (WP_002367720.1). @@ -18,7 +18,7 @@ The AbiI system is present in a total of 8 different species. Among the 22k complete genomes of RefSeq, this system is present in 8 genomes (0.0 %). - +{width=750px} *Proportion of genome encoding the AbiI system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/abij.md b/content/2.defense-systems/abij.md index 245dc812b4bd0730d43d911ec4817610f6af82df..cdd4d8c03ab8bef1547db76680c3dd444166aac5 100644 --- a/content/2.defense-systems/abij.md +++ b/content/2.defense-systems/abij.md @@ -8,7 +8,7 @@ The AbiJ system is composed of one protein: AbiJ. Here is an example found in the RefSeq database: - +{width=750px} AbiJ system in the genome of *Loigolactobacillus backii* (GCF_001663735.1) is composed of 1 protein: AbiJ (WP_068377534.1). @@ -18,7 +18,7 @@ The AbiJ system is present in a total of 321 different species. Among the 22k complete genomes of RefSeq, this system is present in 807 genomes (3.5 %). - +{width=750px} *Proportion of genome encoding the AbiJ system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/abik.md b/content/2.defense-systems/abik.md index e87158419fce7206d3dee8bb159fc2ada0d3679d..f5cde1323dd1e45bbac6c2ff69bf13f7a712c139 100644 --- a/content/2.defense-systems/abik.md +++ b/content/2.defense-systems/abik.md @@ -8,7 +8,7 @@ The AbiK system is composed of one protein: AbiK. Here is an example found in the RefSeq database: - +{width=750px} AbiK system in the genome of *Lactococcus lactis* (GCF_002078995.2) is composed of 1 protein: AbiK (WP_081199340.1). @@ -18,7 +18,7 @@ The AbiK system is present in a total of 32 different species. Among the 22k complete genomes of RefSeq, this system is present in 107 genomes (0.5 %). - +{width=750px} *Proportion of genome encoding the AbiK system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/abil.md b/content/2.defense-systems/abil.md index 90521fc9ce25903d6b748a00a120d09c827697b0..5fb9ca1de50681ba85ee5f9cb23ce189fe1b7f77 100644 --- a/content/2.defense-systems/abil.md +++ b/content/2.defense-systems/abil.md @@ -8,7 +8,7 @@ The AbiL system is composed of 2 proteins: AbiLii2 and, AbiLi2. Here is an example found in the RefSeq database: - +{width=750px} AbiL system in the genome of *Fusobacterium nucleatum* (GCF_003019785.1) is composed of 2 proteins: AbiLii2 (WP_005903821.1)and, AbiLi2 (WP_005903823.1). @@ -18,7 +18,7 @@ The AbiL system is present in a total of 456 different species. Among the 22k complete genomes of RefSeq, this system is present in 783 genomes (3.4 %). - +{width=750px} *Proportion of genome encoding the AbiL system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/abin.md b/content/2.defense-systems/abin.md index 5e732ecb0acea5e24dfa49349d4822ff7d6ff1a9..d59635887ff47c17292bb3d7281deede353aa222 100644 --- a/content/2.defense-systems/abin.md +++ b/content/2.defense-systems/abin.md @@ -8,7 +8,7 @@ The AbiN system is composed of one protein: AbiN. Here is an example found in the RefSeq database: - +{width=750px} AbiN system in the genome of *Enterococcus faecalis* (GCF_016743895.1) is composed of 1 protein: AbiN (WP_002384355.1). @@ -18,7 +18,7 @@ The AbiN system is present in a total of 51 different species. Among the 22k complete genomes of RefSeq, this system is present in 167 genomes (0.7 %). - +{width=750px} *Proportion of genome encoding the AbiN system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/abio.md b/content/2.defense-systems/abio.md index db17b2c3a9b566acb756c704ccf9be184be68450..26c40094a5f75974375fa9cac073dcdbcfbebff2 100644 --- a/content/2.defense-systems/abio.md +++ b/content/2.defense-systems/abio.md @@ -8,7 +8,7 @@ The AbiO system is composed of one protein: AbiO. Here is an example found in the RefSeq database: - +{width=750px} AbiO system in the genome of *Pasteurella multocida* (GCF_016313205.1) is composed of 1 protein: AbiO (WP_005752771.1). @@ -18,7 +18,7 @@ The AbiO system is present in a total of 67 different species. Among the 22k complete genomes of RefSeq, this system is present in 109 genomes (0.5 %). - +{width=750px} *Proportion of genome encoding the AbiO system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/abip2.md b/content/2.defense-systems/abip2.md index b9410413a4b1ab41bba943ca745dbe2c44c09919..e087ce5281e418058f99eed5050230e9168b40ca 100644 --- a/content/2.defense-systems/abip2.md +++ b/content/2.defense-systems/abip2.md @@ -8,7 +8,7 @@ The AbiP2 system is composed of one protein: AbiP2. Here is an example found in the RefSeq database: - +{width=750px} AbiP2 system in the genome of *Casimicrobium huifangae* (GCF_009746125.1) is composed of 1 protein: AbiP2 (WP_156862066.1). @@ -18,7 +18,7 @@ The AbiP2 system is present in a total of 98 different species. Among the 22k complete genomes of RefSeq, this system is present in 299 genomes (1.3 %). - +{width=750px} *Proportion of genome encoding the AbiP2 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/abiq.md b/content/2.defense-systems/abiq.md index c8aba6b6823227eeacf3d80065418c66837405c9..a213c78f3ee9325f1b50d055e36f0c829ce7adf8 100644 --- a/content/2.defense-systems/abiq.md +++ b/content/2.defense-systems/abiq.md @@ -8,7 +8,7 @@ The AbiQ system is composed of one protein: AbiQ. Here is an example found in the RefSeq database: - +{width=750px} AbiQ system in the genome of *Enterococcus sp.* (GCF_003812305.1) is composed of 1 protein: AbiQ (WP_123866849.1). @@ -18,7 +18,7 @@ The AbiQ system is present in a total of 110 different species. Among the 22k complete genomes of RefSeq, this system is present in 262 genomes (1.1 %). - +{width=750px} *Proportion of genome encoding the AbiQ system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/abir.md b/content/2.defense-systems/abir.md index 8b1da27a052b3eb337432d1fd83c91ec264f762c..8099eb418b26578f691ed8e4427929aad5d23505 100644 --- a/content/2.defense-systems/abir.md +++ b/content/2.defense-systems/abir.md @@ -8,7 +8,7 @@ The AbiR system is composed of 3 proteins: AbiRc, AbiRb and, AbiRa. Here is an example found in the RefSeq database: - +{width=750px} AbiR system in the genome of *Pediococcus pentosaceus* (GCF_019614475.1) is composed of 3 proteins: AbiRa (WP_220689027.1), AbiRb (WP_011673124.1)and, AbiRc (WP_011673125.1). @@ -18,7 +18,7 @@ The AbiR system is present in a total of 31 different species. Among the 22k complete genomes of RefSeq, this system is present in 56 genomes (0.2 %). - +{width=750px} *Proportion of genome encoding the AbiR system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/abit.md b/content/2.defense-systems/abit.md index c38be058f3807a1c744dae08abb0f398c6a529ec..19b38b2dd0c72c47d9eaeedc560c75cb31b2d585 100644 --- a/content/2.defense-systems/abit.md +++ b/content/2.defense-systems/abit.md @@ -8,7 +8,7 @@ The AbiT system is composed of 2 proteins: AbiTii and, AbiTi. Here is an example found in the RefSeq database: - +{width=750px} AbiT system in the genome of *Sphaerochaeta associata* (GCF_022869165.1) is composed of 2 proteins: AbiTi (WP_244771454.1)and, AbiTii (WP_244771455.1). @@ -18,7 +18,7 @@ The AbiT system is present in a total of 5 different species. Among the 22k complete genomes of RefSeq, this system is present in 8 genomes (0.0 %). - +{width=750px} *Proportion of genome encoding the AbiT system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/abiu.md b/content/2.defense-systems/abiu.md index 8425bb0f50fc8bc5a27b7a1730d896390939906a..3679306b660f91313cc2d5631f8a73d6b1a70409 100644 --- a/content/2.defense-systems/abiu.md +++ b/content/2.defense-systems/abiu.md @@ -8,7 +8,7 @@ The AbiU system is composed of one protein: AbiU. Here is an example found in the RefSeq database: - +{width=750px} AbiU system in the genome of *Fulvivirga lutea* (GCF_017068455.1) is composed of 1 protein: AbiU (WP_205721428.1). @@ -18,7 +18,7 @@ The AbiU system is present in a total of 390 different species. Among the 22k complete genomes of RefSeq, this system is present in 1017 genomes (4.5 %). - +{width=750px} *Proportion of genome encoding the AbiU system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/abiv.md b/content/2.defense-systems/abiv.md index e836756155819ba223a8b39062fcdaba0e3c2b75..4fcce8458ba78d85cce6f52dd94df1b05a98415f 100644 --- a/content/2.defense-systems/abiv.md +++ b/content/2.defense-systems/abiv.md @@ -8,7 +8,7 @@ The AbiV system is composed of one protein: AbiV. Here is an example found in the RefSeq database: - +{width=750px} AbiV system in the genome of *Lactococcus cremoris* (GCF_017376415.1) is composed of 1 protein: AbiV (WP_011834704.1). @@ -18,7 +18,7 @@ The AbiV system is present in a total of 76 different species. Among the 22k complete genomes of RefSeq, this system is present in 126 genomes (0.6 %). - +{width=750px} *Proportion of genome encoding the AbiV system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/abiz.md b/content/2.defense-systems/abiz.md index 626827168f1c68db1b662b3355c16dc6a6f7d29c..5ba7e643442f771ae0504f2a4115683fc3c57c12 100644 --- a/content/2.defense-systems/abiz.md +++ b/content/2.defense-systems/abiz.md @@ -8,7 +8,7 @@ The AbiZ system is composed of one protein: AbiZ. Here is an example found in the RefSeq database: - +{width=750px} AbiZ system in the genome of *Streptococcus oralis* (GCF_019334565.1) is composed of 1 protein: AbiZ (WP_215804505.1). @@ -18,7 +18,7 @@ The AbiZ system is present in a total of 191 different species. Among the 22k complete genomes of RefSeq, this system is present in 831 genomes (3.6 %). - +{width=750px} *Proportion of genome encoding the AbiZ system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/aditi.md b/content/2.defense-systems/aditi.md index 35d19052e0b0f3aa7a394796e68cda2e00ddd2d5..9dae844a6213203fe7472427f9b0e1794538d4cc 100644 --- a/content/2.defense-systems/aditi.md +++ b/content/2.defense-systems/aditi.md @@ -8,7 +8,7 @@ The Aditi system is composed of 2 proteins: DitB and, DitA. Here is an example found in the RefSeq database: - +{width=750px} Aditi system in the genome of *Fusobacterium hwasookii* (GCF_001455105.1) is composed of 2 proteins: DitB (WP_029491896.1)and, DitA (WP_029491897.1). @@ -18,7 +18,7 @@ The Aditi system is present in a total of 18 different species. Among the 22k complete genomes of RefSeq, this system is present in 40 genomes (0.2 %). - +{width=750px} *Proportion of genome encoding the Aditi system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/avast.md b/content/2.defense-systems/avast.md index a21de140a6357f2b2b781ce90505802984279ee9..582d54f1889346da622413903dd5da06f1f3e31d 100644 --- a/content/2.defense-systems/avast.md +++ b/content/2.defense-systems/avast.md @@ -15,23 +15,23 @@ The AVAST system have been describe in a total of 5 subsystems. Here is some example found in the RefSeq database: - +{width=750px} AVAST_I subsystem in the genome of *Vibrio sp.* (GCF_905175355.1) is composed of 3 proteins: Avs1A (WP_208445041.1), Avs1B (WP_208445042.1)and, Avs1C (WP_108173272.1). - +{width=750px} AVAST_II subsystem in the genome of *Escherichia coli* (GCF_018884505.1) is composed of 1 protein: Avs2A (WP_032199984.1). - +{width=750px} AVAST_III subsystem in the genome of *Enterobacter cancerogenus* (GCF_002850575.1) is composed of 2 proteins: Avs3B (WP_199559884.1)and, Avs3A (WP_101737373.1). - +{width=750px} AVAST_IV subsystem in the genome of *Escherichia coli* (GCF_016903595.1) is composed of 1 protein: Avs4A (WP_000240574.1). - +{width=750px} AVAST_V subsystem in the genome of *Leclercia adecarboxylata* (GCF_006171285.1) is composed of 1 protein: Avs5A (WP_139565349.1). @@ -41,7 +41,7 @@ The AVAST system is present in a total of 363 different species. Among the 22k complete genomes of RefSeq, this system is present in 1046 genomes (4.6 %). - +{width=750px} *Proportion of genome encoding the AVAST system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* diff --git a/content/2.defense-systems/azaca.md b/content/2.defense-systems/azaca.md index bc9e742930424c769ac5a17a3aace1b1eafb9fcd..2abc29576d8c7b5a52f34f6c2a4952b415e01a23 100644 --- a/content/2.defense-systems/azaca.md +++ b/content/2.defense-systems/azaca.md @@ -8,7 +8,7 @@ The Azaca system is composed of 3 proteins: ZacA, ZacB and, ZacC. Here is an example found in the RefSeq database: - +{width=750px} Azaca system in the genome of *Ornithinimicrobium sp.* (GCF_023923205.1) is composed of 3 proteins: ZacA (WP_252620090.1), ZacB (WP_252620091.1)and, ZacC (WP_252620092.1). @@ -18,7 +18,7 @@ The Azaca system is present in a total of 156 different species. Among the 22k complete genomes of RefSeq, this system is present in 206 genomes (0.9 %). - +{width=750px} *Proportion of genome encoding the Azaca system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/borvo.md b/content/2.defense-systems/borvo.md index a1109c9862e86d95f44382e83323fc55a6bee38b..6273a7683ebfb3fa5ba5dffe6fea4d506824881c 100644 --- a/content/2.defense-systems/borvo.md +++ b/content/2.defense-systems/borvo.md @@ -8,7 +8,7 @@ The Borvo system is composed of one protein: BovA. Here is an example found in the RefSeq database: - +{width=750px} Borvo system in the genome of *Brevundimonas sp.* (GCF_002002865.1) is composed of 1 protein: BovA_addition (WP_077354142.1). @@ -18,7 +18,7 @@ The Borvo system is present in a total of 348 different species. Among the 22k complete genomes of RefSeq, this system is present in 650 genomes (2.9 %). - +{width=750px} *Proportion of genome encoding the Borvo system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/brex.md b/content/2.defense-systems/brex.md index cd6dc5389af9db2d2d43db50a2ac272e4d820e85..b2b4ac2080a17440c2534447131796b5b090faad 100644 --- a/content/2.defense-systems/brex.md +++ b/content/2.defense-systems/brex.md @@ -31,11 +31,11 @@ Although 4 additional BREX subtypes have been proposed, BREX Type 1 and Type 2 r Here is some example found in the RefSeq database: - +{width=750px} BREX_I subsystem in the genome of *Kaistella sp.* (GCF_020410745.1) is composed of 6 proteins: brxL (WP_226063319.1), pglZA (WP_226063320.1), pglX1 (WP_226063321.1), brxC (WP_226063322.1), brxB_DUF1788 (WP_226063323.1)and, brxA_DUF1819 (WP_226063324.1). - +{width=750px} BREX_II subsystem in the genome of *Streptomyces hygroscopicus* (GCF_001447075.1) is composed of 5 proteins: brxD (WP_058082289.1), pglZ2 (WP_058082290.1), pglY (WP_058082291.1), pglX2 (WP_058082292.1)and, pglW (WP_237280966.1). @@ -45,7 +45,7 @@ The BREX system is present in a total of 732 different species. Among the 22k complete genomes of RefSeq, this system is present in 1612 genomes (7.1 %). - +{width=750px} *Proportion of genome encoding the BREX system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* diff --git a/content/2.defense-systems/bsta.md b/content/2.defense-systems/bsta.md index 4e98cec7a65bc72754d93be39064430ff9b3d3c0..577cd9ff45aa13d167bea939b90d726a3787a126 100644 --- a/content/2.defense-systems/bsta.md +++ b/content/2.defense-systems/bsta.md @@ -18,7 +18,7 @@ The BstA system is composed of one protein: BstA. Here is an example found in the RefSeq database: - +{width=750px} BstA system in the genome of *Providencia rustigianii* (GCF_900635875.1) is composed of 1 protein: BstA (WP_126437212.1). @@ -28,7 +28,7 @@ The BstA system is present in a total of 81 different species. Among the 22k complete genomes of RefSeq, this system is present in 236 genomes (1.0 %). - +{width=750px} *Proportion of genome encoding the BstA system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/bunzi.md b/content/2.defense-systems/bunzi.md index fa084df887109d77ebd665163acde2d24df2ce44..7a012d7797eb1ef258277de22bd538f04227c753 100644 --- a/content/2.defense-systems/bunzi.md +++ b/content/2.defense-systems/bunzi.md @@ -8,7 +8,7 @@ The Bunzi system is composed of 2 proteins: BnzB and, BnzA. Here is an example found in the RefSeq database: - +{width=750px} Bunzi system in the genome of *Mammaliicoccus lentus* (GCF_014070215.1) is composed of 2 proteins: BnzB (WP_107556517.1)and, BnzA (WP_107556516.1). @@ -18,7 +18,7 @@ The Bunzi system is present in a total of 86 different species. Among the 22k complete genomes of RefSeq, this system is present in 286 genomes (1.3 %). - +{width=750px} *Proportion of genome encoding the Bunzi system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/caprel.md b/content/2.defense-systems/caprel.md index 2a563ff8a170c1ab10d9dec413840fd7ee22d16d..8c97cfa921ad8b6abb4d94776283ed260116d6dc 100644 --- a/content/2.defense-systems/caprel.md +++ b/content/2.defense-systems/caprel.md @@ -20,7 +20,7 @@ The CapRel system is composed of one protein: CapRel. Here is an example found in the RefSeq database: - +{width=750px} CapRel system in the genome of *Escherichia coli* (GCF_003856995.1) is composed of 1 protein: CapRel (WP_000526244.1). @@ -30,7 +30,7 @@ The CapRel system is present in a total of 202 different species. Among the 22k complete genomes of RefSeq, this system is present in 407 genomes (1.8 %). - +{width=750px} *Proportion of genome encoding the CapRel system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/cbass.md b/content/2.defense-systems/cbass.md index 39b41d35f9b4fc1e7358c4474a5394499c9c9bef..14812d8366f526fdd6f1856d6a0b33db0ab9fdf8 100644 --- a/content/2.defense-systems/cbass.md +++ b/content/2.defense-systems/cbass.md @@ -8,19 +8,19 @@ The CBASS system have been describe in a total of 5 subsystems. Here is some example found in the RefSeq database: - +{width=750px} CBASS_I subsystem in the genome of *Rhizobium leguminosarum* (GCF_002243365.1) is composed of 2 proteins: 4TM_new (WP_094230678.1)and, Cyclase_SMODS (WP_094230679.1). - +{width=750px} CBASS_II subsystem in the genome of *Parvularcula bermudensis* (GCF_000152825.2) is composed of 3 proteins: 4TM_new (WP_013299178.1), Cyclase_II (WP_148235131.1)and, AG_E2_Prok-E2_B (WP_013299180.1). - +{width=750px} CBASS_III subsystem in the genome of *Methylocella tundrae* (GCF_900749825.1) is composed of 5 proteins: Endonuc_small (WP_134490779.1), Cyclase_SMODS (WP_134490781.1), bacHORMA_2 (WP_134490783.1), HORMA (WP_134490785.1)and, TRIP13 (WP_134490787.1). - +{width=750px} CBASS_IV subsystem in the genome of *Bacillus sp.* (GCF_022809835.1) is composed of 4 proteins: 2TM_type_IV (WP_243501124.1), QueC (WP_206906219.1), TGT (WP_243501126.1)and, Cyclase_SMODS (WP_243501127.1). @@ -30,7 +30,7 @@ The CBASS system is present in a total of 1062 different species. Among the 22k complete genomes of RefSeq, this system is present in 2938 genomes (12.9 %). - +{width=750px} *Proportion of genome encoding the CBASS system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* diff --git a/content/2.defense-systems/dartg.md b/content/2.defense-systems/dartg.md index 231b3c458a324df5a694fe311873f9def9ccffe8..c76bdd1d9244e10f35601101a4bf973b0fc086e0 100644 --- a/content/2.defense-systems/dartg.md +++ b/content/2.defense-systems/dartg.md @@ -8,7 +8,7 @@ The DarTG system is composed of 2 proteins: DarT and, DarG. Here is an example found in the RefSeq database: - +{width=750px} DarTG system in the genome of *Mycobacterium tuberculosis* (GCF_904810345.1) is composed of 2 proteins: DarT (WP_003400548.1)and, DarG (WP_003400551.1). @@ -18,7 +18,7 @@ The DarTG system is present in a total of 356 different species. Among the 22k complete genomes of RefSeq, this system is present in 955 genomes (4.2 %). - +{width=750px} *Proportion of genome encoding the DarTG system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/dazbog.md b/content/2.defense-systems/dazbog.md index 10ba7a1391d8c87222aff6da70a88a447465fefb..ae64694ed7285253f5fceb413a5b12b619956c26 100644 --- a/content/2.defense-systems/dazbog.md +++ b/content/2.defense-systems/dazbog.md @@ -8,7 +8,7 @@ The Dazbog system is composed of 2 proteins: DzbB and, DzbA. Here is an example found in the RefSeq database: - +{width=750px} Dazbog system in the genome of *Bacillus cereus* (GCF_001518875.1) is composed of 2 proteins: DzbA (WP_082188833.1)and, DzbB (WP_059303380.1). @@ -18,7 +18,7 @@ The Dazbog system is present in a total of 66 different species. Among the 22k complete genomes of RefSeq, this system is present in 73 genomes (0.3 %). - +{width=750px} *Proportion of genome encoding the Dazbog system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/dctpdeaminase.md b/content/2.defense-systems/dctpdeaminase.md index c01c65bf970fe8a1fc8a13555c610367ee70fa82..faa6dff61d2d5a9f9690735a1978982ff461ee0d 100644 --- a/content/2.defense-systems/dctpdeaminase.md +++ b/content/2.defense-systems/dctpdeaminase.md @@ -18,7 +18,7 @@ The dCTPdeaminase system is composed of one protein: dCTPdeaminase. Here is an example found in the RefSeq database: - +{width=750px} dCTPdeaminase system in the genome of *Vibrio parahaemolyticus* (GCF_009883855.1) is composed of 1 protein: dCTPdeaminase (WP_029845369.1). @@ -28,7 +28,7 @@ The dCTPdeaminase system is present in a total of 269 different species. Among the 22k complete genomes of RefSeq, this system is present in 501 genomes (2.2 %). - +{width=750px} *Proportion of genome encoding the dCTPdeaminase system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/dgtpase.md b/content/2.defense-systems/dgtpase.md index 3374b7179802898de823e9c44884fbc7e6b928f9..49a18518cc7afd5905b25ad34275acc87fedc32a 100644 --- a/content/2.defense-systems/dgtpase.md +++ b/content/2.defense-systems/dgtpase.md @@ -10,7 +10,7 @@ The dGTPase system is composed of one protein: Sp_dGTPase. Here is an example found in the RefSeq database: - +{width=750px} dGTPase system in the genome of *Acinetobacter pittii* (GCF_002012285.1) is composed of 1 protein: Sp_dGTPase (WP_213033921.1). @@ -20,7 +20,7 @@ The dGTPase system is present in a total of 353 different species. Among the 22k complete genomes of RefSeq, this system is present in 1532 genomes (6.7 %). - +{width=750px} *Proportion of genome encoding the dGTPase system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/disarm.md b/content/2.defense-systems/disarm.md index 0fe72771d270d03c8d7e3aab451d1df88b66140f..d01abda8e695bd612d34fbb1687a71cde4ad1dab 100644 --- a/content/2.defense-systems/disarm.md +++ b/content/2.defense-systems/disarm.md @@ -26,11 +26,11 @@ These three core genes are accompanied by a methyltransferase, which can be eith Here is some example found in the RefSeq database: - +{width=750px} DISARM_1 subsystem in the genome of *Pseudomonas aeruginosa* (GCF_009676885.1) is composed of 6 proteins: drmD (WP_023093122.1), drmMI (WP_023115027.1), drmD (WP_023093126.1), drmA (WP_033993408.1), drmB (WP_023093129.1)and, drmC (WP_031637507.1). - +{width=750px} DISARM_2 subsystem in the genome of *Bacillus paralicheniformis* (GCF_009497935.1) is composed of 5 proteins: drmMII (WP_020450482.1), drmC (WP_020450481.1), drmB (WP_025810358.1), drmA (WP_020450479.1)and, drmE (WP_020450478.1). @@ -40,7 +40,7 @@ The DISARM system is present in a total of 214 different species. Among the 22k complete genomes of RefSeq, this system is present in 341 genomes (1.5 %). - +{width=750px} *Proportion of genome encoding the DISARM system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* diff --git a/content/2.defense-systems/dmdde.md b/content/2.defense-systems/dmdde.md index a06f404e70a6173b663a0622c869407f6fc55e3b..b6399e09af9078940ea5d95c39be49942132221b 100644 --- a/content/2.defense-systems/dmdde.md +++ b/content/2.defense-systems/dmdde.md @@ -8,7 +8,7 @@ The DmdDE system is composed of 2 proteins: DdmE and, DdmD. Here is an example found in the RefSeq database: - +{width=750px} DdmDE subsystem in the genome of *Vibrio vulnificus* (GCF_002850455.1) is composed of 2 proteins: DdmE (WP_101957190.1)and, DdmD (WP_101957191.1). @@ -18,7 +18,7 @@ The DmdDE system is present in a total of 50 different species. Among the 22k complete genomes of RefSeq, this system is present in 145 genomes (0.6 %). - +{width=750px} *Proportion of genome encoding the DmdDE system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/dnd.md b/content/2.defense-systems/dnd.md index 57c5187bd560155c577533d4a43f43bc63eb70aa..b4b040b3fdc41f801f8b055ef2d0ba4f5f40f957 100644 --- a/content/2.defense-systems/dnd.md +++ b/content/2.defense-systems/dnd.md @@ -8,11 +8,11 @@ The Dnd system have been describe in a total of 2 subsystems. Here is some example found in the RefSeq database: - +{width=750px} Dnd_ABCDE subsystem in the genome of *Vibrio tritonius* (GCF_001547935.1) is composed of 6 proteins: DndA (WP_068714508.1), DndB (WP_068714510.1), DndC (WP_068714512.1), DndD (WP_068714514.1), DndE (WP_068714516.1)and, DndD (WP_068714526.1). - +{width=750px} Dnd_ABCDEFGH subsystem in the genome of *Vibrio sp.* (GCF_023716625.1) is composed of 8 proteins: DptF (WP_252041715.1), DptG (WP_252041716.1), DptH (WP_252041717.1), DndE (WP_252041720.1), DndD (WP_252041722.1), DndC (WP_252041723.1), DndB (WP_252041724.1)and, DndA (WP_252041725.1). @@ -22,7 +22,7 @@ The Dnd system is present in a total of 218 different species. Among the 22k complete genomes of RefSeq, this system is present in 388 genomes (1.7 %). - +{width=750px} *Proportion of genome encoding the Dnd system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* diff --git a/content/2.defense-systems/dodola.md b/content/2.defense-systems/dodola.md index f60bcfa8d4080256727a9e4b9bd9f03b80eac61e..59c86b6d1158e1a13dd873bdf31e59d5e7b5f477 100644 --- a/content/2.defense-systems/dodola.md +++ b/content/2.defense-systems/dodola.md @@ -8,7 +8,7 @@ The Dodola system is composed of 2 proteins: DolA and, DolB. Here is an example found in the RefSeq database: - +{width=750px} Dodola system in the genome of *Streptococcus thermophilus* (GCF_015190465.1) is composed of 2 proteins: DolA (WP_084825722.1)and, DolB (WP_084825723.1). @@ -18,7 +18,7 @@ The Dodola system is present in a total of 91 different species. Among the 22k complete genomes of RefSeq, this system is present in 313 genomes (1.4 %). - +{width=750px} *Proportion of genome encoding the Dodola system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/dpd.md b/content/2.defense-systems/dpd.md index c1f25b5cd0f661c547c34d02258c6a1ac6186838..c42a4b7730ed194ecca85afe71d18a5e13633f15 100644 --- a/content/2.defense-systems/dpd.md +++ b/content/2.defense-systems/dpd.md @@ -8,7 +8,7 @@ The Dpd system is composed of 15 proteins: FolE, QueD, DpdC, DpdA, DpdB, QueC, D Here is an example found in the RefSeq database: - +{width=750px} Dpd system in the genome of *Thalassotalea crassostreae* (GCF_001831495.1) is composed of 15 proteins: QueE (WP_068546614.1), DpdE (WP_068546526.1), DpdF (WP_068546528.1), DpdG (WP_068546530.1), DpdH (WP_070795901.1), DpdI (WP_068546533.1), DpdJ (WP_068546534.1), DpdK (WP_082897170.1), DpdD (WP_068546535.1), QueC (WP_068546536.1), DpdB (WP_068546537.1), DpdA (WP_068546538.1), DpdC (WP_157726628.1), QueD (WP_068546540.1)and, FolE (WP_068546542.1). @@ -18,7 +18,7 @@ The Dpd system is present in a total of 100 different species. Among the 22k complete genomes of RefSeq, this system is present in 226 genomes (1.0 %). - +{width=750px} *Proportion of genome encoding the Dpd system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/drt.md b/content/2.defense-systems/drt.md index eb5b5194fe158d364cb3075dce1c0ef33e4ea371..e8cc76ad5de35b87f7e0fef273ac56e7fd8ebcb2 100644 --- a/content/2.defense-systems/drt.md +++ b/content/2.defense-systems/drt.md @@ -8,35 +8,35 @@ The DRT system have been describe in a total of 9 subsystems. Here is some example found in the RefSeq database: - +{width=750px} DRT6 subsystem in the genome of *Methylobacterium sp.* (GCF_003254375.1) is composed of 1 protein: DRT6 (WP_111474389.1). - +{width=750px} DRT8 subsystem in the genome of *Undibacterium sp.* (GCF_009937955.1) is composed of 2 proteins: DRT8b (WP_162060770.1)and, DRT8 (WP_162060771.1). - +{width=750px} DRT9 subsystem in the genome of *Pseudomonas aeruginosa* (GCF_016864415.1) is composed of 1 protein: DRT9 (WP_071567741.1). - +{width=750px} DRT_1 subsystem in the genome of *Vibrio parahaemolyticus* (GCF_000430405.1) is composed of 2 proteins: drt1a (WP_020841728.1)and, drt1b (WP_020841729.1). - +{width=750px} DRT_2 subsystem in the genome of *Klebsiella variicola* (GCF_018324045.1) is composed of 1 protein: drt2 (WP_020244644.1). - +{width=750px} DRT_3 subsystem in the genome of *Vibrio mimicus* (GCF_019048845.1) is composed of 2 proteins: drt3a (WP_217011272.1)and, drt3b (WP_217011273.1). - +{width=750px} DRT_4 subsystem in the genome of *Escherichia albertii* (GCF_003316815.1) is composed of 1 protein: drt4 (WP_103054060.1). - +{width=750px} DRT_5 subsystem in the genome of *Escherichia coli* (GCF_016904115.1) is composed of 1 protein: drt5 (WP_001524904.1). @@ -46,7 +46,7 @@ The DRT system is present in a total of 573 different species. Among the 22k complete genomes of RefSeq, this system is present in 1365 genomes (6.0 %). - +{width=750px} *Proportion of genome encoding the DRT system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* diff --git a/content/2.defense-systems/druantia.md b/content/2.defense-systems/druantia.md index b3e55d57a07fa240450dd69da3ddb4261d500bce..7b48ecdcf25bddd38acad6cba43f5c1462e06bdb 100644 --- a/content/2.defense-systems/druantia.md +++ b/content/2.defense-systems/druantia.md @@ -8,15 +8,15 @@ The Druantia system have been describe in a total of 3 subsystems. Here is some example found in the RefSeq database: - +{width=750px} Druantia_I subsystem in the genome of *Escherichia coli* (GCF_002220215.1) is composed of 5 proteins: DruA (WP_000549798.1), DruB (WP_001315973.1), DruC (WP_021520530.1), DruD (WP_000455180.1)and, DruE_1 (WP_089180326.1). - +{width=750px} Druantia_II subsystem in the genome of *Collimonas pratensis* (GCF_001584185.1) is composed of 4 proteins: DruM (WP_082793204.1), DruE_2 (WP_061945149.1), DruG (WP_061945151.1)and, DruF (WP_150119800.1). - +{width=750px} Druantia_III subsystem in the genome of *Acinetobacter baumannii* (GCF_012935125.1) is composed of 2 proteins: DruH (WP_005120035.1)and, DruE_3 (WP_002036795.1). @@ -26,7 +26,7 @@ The Druantia system is present in a total of 284 different species. Among the 22k complete genomes of RefSeq, this system is present in 827 genomes (3.6 %). - +{width=750px} *Proportion of genome encoding the Druantia system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* diff --git a/content/2.defense-systems/dsr.md b/content/2.defense-systems/dsr.md index c2faac1a3fc6fc6f60feb24247301b4134910e2b..722dc618d3cdd58e8ee8fc88a5795b61c88a2a19 100644 --- a/content/2.defense-systems/dsr.md +++ b/content/2.defense-systems/dsr.md @@ -8,11 +8,11 @@ The Dsr system have been describe in a total of 2 subsystems. Here is some example found in the RefSeq database: - +{width=750px} Dsr_I subsystem in the genome of *Escherichia coli* (GCF_016904235.1) is composed of 1 protein: Dsr1 (WP_204608492.1). - +{width=750px} Dsr_II subsystem in the genome of *Escherichia coli* (GCF_009950125.1) is composed of 1 protein: Dsr2 (WP_178103017.1). @@ -22,7 +22,7 @@ The Dsr system is present in a total of 246 different species. Among the 22k complete genomes of RefSeq, this system is present in 641 genomes (2.8 %). - +{width=750px} *Proportion of genome encoding the Dsr system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* diff --git a/content/2.defense-systems/eleos.md b/content/2.defense-systems/eleos.md index 9ef0aab72490e122a0c0747878d51c6827b4ca34..e760a2c734af627f03f8111f25bde00643b9fb10 100644 --- a/content/2.defense-systems/eleos.md +++ b/content/2.defense-systems/eleos.md @@ -9,7 +9,7 @@ The Eleos system is composed of 2 proteins: LeoA and, LeoBC. Sometimes, the syst Here is an example found in the RefSeq database: - +{width=750px} Dynamins system in the genome of *Pseudomonas aeruginosa* (GCF_002223805.1) is composed of 2 proteins: LeoBC (WP_024947442.1)and, LeoA (WP_024947443.1). @@ -19,7 +19,7 @@ The Eleos system is present in a total of 807 different species. Among the 22k complete genomes of RefSeq, this system is present in 2652 genomes (11.6 %). - +{width=750px} *Proportion of genome encoding the Eleos system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/gabija.md b/content/2.defense-systems/gabija.md index 7f13e784262973236eac93e462a293c717ef4155..9c030312ef4244c8f7d1f416a196d003761e9a98 100644 --- a/content/2.defense-systems/gabija.md +++ b/content/2.defense-systems/gabija.md @@ -18,7 +18,7 @@ The Gabija system is composed of 2 proteins: GajA and, GajB_2. Here is an example found in the RefSeq database: - +{width=750px} Gabija system in the genome of *Vibrio parahaemolyticus* (GCF_009883895.1) is composed of 2 proteins: GajA (WP_085576823.1)and, GajB_1 (WP_031856308.1). @@ -28,7 +28,7 @@ The Gabija system is present in a total of 1200 different species. Among the 22k complete genomes of RefSeq, this system is present in 3762 genomes (16.5 %). - +{width=750px} *Proportion of genome encoding the Gabija system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/gao_ape.md b/content/2.defense-systems/gao_ape.md index cf14a96d8e9dea3669ea808193971ad363f708f3..4c3a39fe563da64b81d93a8b2457c31bcb9d840d 100644 --- a/content/2.defense-systems/gao_ape.md +++ b/content/2.defense-systems/gao_ape.md @@ -8,7 +8,7 @@ The Gao_Ape system is composed of one protein: ApeA. Here is an example found in the RefSeq database: - +{width=750px} Gao_Ape system in the genome of *Klebsiella sp.* (GCF_018388785.1) is composed of 1 protein: ApeA (WP_213292831.1). @@ -18,7 +18,7 @@ The Gao_Ape system is present in a total of 76 different species. Among the 22k complete genomes of RefSeq, this system is present in 199 genomes (0.9 %). - +{width=750px} *Proportion of genome encoding the Gao_Ape system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/gao_her.md b/content/2.defense-systems/gao_her.md index 204aa024e3993105149a52a779abcd874f362cf8..12917d528e596f850b992398d72e352d62555440 100644 --- a/content/2.defense-systems/gao_her.md +++ b/content/2.defense-systems/gao_her.md @@ -8,11 +8,11 @@ The Gao_Her system have been describe in a total of 2 subsystems. Here is some example found in the RefSeq database: - +{width=750px} Gao_Her_DUF subsystem in the genome of *Enterobacter roggenkampii* (GCF_014524505.1) is composed of 2 proteins: DUF4297 (WP_188074283.1)and, HerA_DUF (WP_063614829.1). - +{width=750px} Gao_Her_SIR subsystem in the genome of *Escherichia coli* (GCF_012221565.1) is composed of 2 proteins: SIR2 (WP_167839366.1)and, HerA_SIR2 (WP_021577682.1). @@ -22,7 +22,7 @@ The Gao_Her system is present in a total of 127 different species. Among the 22k complete genomes of RefSeq, this system is present in 233 genomes (1.0 %). - +{width=750px} *Proportion of genome encoding the Gao_Her system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* diff --git a/content/2.defense-systems/gao_hhe.md b/content/2.defense-systems/gao_hhe.md index fde14e0c7c0f4288b2d26641ba10a961298dcb63..6c73725bb576829cdfa2e36b6361bd943f1fa924 100644 --- a/content/2.defense-systems/gao_hhe.md +++ b/content/2.defense-systems/gao_hhe.md @@ -8,7 +8,7 @@ The Gao_Hhe system is composed of one protein: HheA. Here is an example found in the RefSeq database: - +{width=750px} Gao_Hhe system in the genome of *Klebsiella pneumoniae* (GCF_011742415.2) is composed of 1 protein: HheA (WP_021314612.1). @@ -18,7 +18,7 @@ The Gao_Hhe system is present in a total of 49 different species. Among the 22k complete genomes of RefSeq, this system is present in 279 genomes (1.2 %). - +{width=750px} *Proportion of genome encoding the Gao_Hhe system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/gao_iet.md b/content/2.defense-systems/gao_iet.md index 0e6755723d80528295126e37c4f835a0309b2ed8..ec0598e866350374be7d94e206d8a09433307084 100644 --- a/content/2.defense-systems/gao_iet.md +++ b/content/2.defense-systems/gao_iet.md @@ -8,7 +8,7 @@ The Gao_Iet system is composed of 2 proteins: IetS and, IetA. Here is an example found in the RefSeq database: - +{width=750px} Gao_Iet system in the genome of *Escherichia coli* (GCF_014169855.1) is composed of 2 proteins: IetS (WP_001551050.1)and, IetA (WP_000385105.1). @@ -18,7 +18,7 @@ The Gao_Iet system is present in a total of 189 different species. Among the 22k complete genomes of RefSeq, this system is present in 436 genomes (1.9 %). - +{width=750px} *Proportion of genome encoding the Gao_Iet system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/gao_mza.md b/content/2.defense-systems/gao_mza.md index a08eff9325948a4d80d9f5a45629954140ce7462..d9232238b125f491aaefaac5dcbf3af551ffa43b 100644 --- a/content/2.defense-systems/gao_mza.md +++ b/content/2.defense-systems/gao_mza.md @@ -8,7 +8,7 @@ The Gao_Mza system is composed of 5 proteins: MzaB, MzaC, MzaA, MzaD and, MzaE. Here is an example found in the RefSeq database: - +{width=750px} Gao_Mza system in the genome of *Enterobacter roggenkampii* (GCF_023023065.1) is composed of 5 proteins: MzaE (WP_045418899.1), MzaD (WP_045418897.1), MzaC (WP_025912266.1), MzaB (WP_045418895.1)and, MzaA (WP_045418893.1). @@ -18,7 +18,7 @@ The Gao_Mza system is present in a total of 57 different species. Among the 22k complete genomes of RefSeq, this system is present in 99 genomes (0.4 %). - +{width=750px} *Proportion of genome encoding the Gao_Mza system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/gao_ppl.md b/content/2.defense-systems/gao_ppl.md index dbd7a0f695077e644ef25b6101301bc13da856b7..9c09ebcb8ca4f00d57a6808f3c393c286dcf520a 100644 --- a/content/2.defense-systems/gao_ppl.md +++ b/content/2.defense-systems/gao_ppl.md @@ -8,7 +8,7 @@ The Gao_Ppl system is composed of one protein: PplA. Here is an example found in the RefSeq database: - +{width=750px} Gao_Ppl system in the genome of *Klebsiella pneumoniae* (GCF_002787755.1) is composed of 1 protein: PplA (WP_015059139.1). @@ -18,7 +18,7 @@ The Gao_Ppl system is present in a total of 106 different species. Among the 22k complete genomes of RefSeq, this system is present in 364 genomes (1.6 %). - +{width=750px} *Proportion of genome encoding the Gao_Ppl system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/gao_qat.md b/content/2.defense-systems/gao_qat.md index 001aa452383acfe062bd28408c68df357da4a55d..63b508c022240dcf1b01917b2000c944a9736337 100644 --- a/content/2.defense-systems/gao_qat.md +++ b/content/2.defense-systems/gao_qat.md @@ -8,7 +8,7 @@ The Gao_Qat system is composed of 4 proteins: QatA, QatB, QatC and, QatD. Here is an example found in the RefSeq database: - +{width=750px} Gao_Qat system in the genome of *Raoultella ornithinolytica* (GCF_002214825.1) is composed of 4 proteins: QatA (WP_088883811.1), QatB (WP_127146083.1), QatC (WP_088883813.1)and, QatD (WP_088883814.1). @@ -18,7 +18,7 @@ The Gao_Qat system is present in a total of 246 different species. Among the 22k complete genomes of RefSeq, this system is present in 645 genomes (2.8 %). - +{width=750px} *Proportion of genome encoding the Gao_Qat system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/gao_rl.md b/content/2.defense-systems/gao_rl.md index 859c2735b7293bebaf5073936ac985716754af8f..ea8fe6a6348b6bceb1c795c0e8e2e8fb20610e19 100644 --- a/content/2.defense-systems/gao_rl.md +++ b/content/2.defense-systems/gao_rl.md @@ -8,7 +8,7 @@ The Gao_RL system is composed of 4 proteins: RL_D, RL_C, RL_B and, RL_A. Here is an example found in the RefSeq database: - +{width=750px} Gao_RL system in the genome of *Morganella morganii* (GCF_020790175.1) is composed of 4 proteins: RL_D (WP_064483389.1), RL_C (WP_064483388.1), RL_B (WP_064483387.1)and, RL_A (WP_064483386.1). @@ -18,7 +18,7 @@ The Gao_RL system is present in a total of 77 different species. Among the 22k complete genomes of RefSeq, this system is present in 133 genomes (0.6 %). - +{width=750px} *Proportion of genome encoding the Gao_RL system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/gao_tery.md b/content/2.defense-systems/gao_tery.md index 6727a7fa34c02faf4dfa24d34f38a9281b7b37fe..27bfab8b354c201e178abdfb6217e4a82cf9c2a0 100644 --- a/content/2.defense-systems/gao_tery.md +++ b/content/2.defense-systems/gao_tery.md @@ -8,7 +8,7 @@ The Gao_TerY system is composed of 3 proteins: TerYC, TerYB and, TerYA. Here is an example found in the RefSeq database: - +{width=750px} Gao_TerY system in the genome of *Burkholderia contaminans* (GCF_018223785.1) is composed of 3 proteins: TerYA (WP_039364687.1), TerYB (WP_039364686.1)and, TerYC (WP_039364684.1). @@ -18,7 +18,7 @@ The Gao_TerY system is present in a total of 69 different species. Among the 22k complete genomes of RefSeq, this system is present in 126 genomes (0.6 %). - +{width=750px} *Proportion of genome encoding the Gao_TerY system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/gao_tmn.md b/content/2.defense-systems/gao_tmn.md index f1fbc796d9ea083e29a6e0e320410161a694bcc9..63c7b89665cd7d55c200d69b31bb84aa60d470c2 100644 --- a/content/2.defense-systems/gao_tmn.md +++ b/content/2.defense-systems/gao_tmn.md @@ -8,7 +8,7 @@ The Gao_Tmn system is composed of one protein: TmnA. Here is an example found in the RefSeq database: - +{width=750px} Gao_Tmn system in the genome of *Salmonella enterica* (GCF_006384195.1) is composed of 1 protein: TmnA (WP_130525902.1). @@ -18,7 +18,7 @@ The Gao_Tmn system is present in a total of 82 different species. Among the 22k complete genomes of RefSeq, this system is present in 414 genomes (1.8 %). - +{width=750px} *Proportion of genome encoding the Gao_Tmn system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/gao_upx.md b/content/2.defense-systems/gao_upx.md index fe1312a9ea072da4fdd4202a195963e949cc0554..e851d123ac276dd8cd1af22acef0a6bb84607ccc 100644 --- a/content/2.defense-systems/gao_upx.md +++ b/content/2.defense-systems/gao_upx.md @@ -8,7 +8,7 @@ The Gao_Upx system is composed of one protein: UpxA. Here is an example found in the RefSeq database: - +{width=750px} Gao_Upx system in the genome of *Salmonella sp.* (GCF_020268625.1) is composed of 1 protein: UpxA (WP_060647174.1). @@ -18,7 +18,7 @@ The Gao_Upx system is present in a total of 31 different species. Among the 22k complete genomes of RefSeq, this system is present in 39 genomes (0.2 %). - +{width=750px} *Proportion of genome encoding the Gao_Upx system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/gasdermin.md b/content/2.defense-systems/gasdermin.md index 7fedb3765050f05f712a16fe13092e5b8a01b5e7..4d0a1436348154a33b2a351d015a9ec6719f17b0 100644 --- a/content/2.defense-systems/gasdermin.md +++ b/content/2.defense-systems/gasdermin.md @@ -8,7 +8,7 @@ The GasderMIN system is composed of one protein: bGSDM. Here is an example found in the RefSeq database: - +{width=750px} GasderMIN system in the genome of *Rhodoplanes sp.* (GCF_001579845.1) is composed of 1 protein: bGSDM (WP_068019379.1). @@ -18,7 +18,7 @@ The GasderMIN system is present in a total of 25 different species. Among the 22k complete genomes of RefSeq, this system is present in 29 genomes (0.1 %). - +{width=750px} *Proportion of genome encoding the GasderMIN system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/gp29_gp30.md b/content/2.defense-systems/gp29_gp30.md index 1771ab3523f8e5d776f181fecaaca31edbf32493..2b242e5fef632a45bc35c290bc14b3d06290c352 100644 --- a/content/2.defense-systems/gp29_gp30.md +++ b/content/2.defense-systems/gp29_gp30.md @@ -8,7 +8,7 @@ The gp29_gp30 system is composed of 2 proteins: gp30 and, gp29. Here is an example found in the RefSeq database: - +{width=750px} gp29_gp30 system in the genome of *Mycobacterium tuberculosis* (GCF_002448055.1) is composed of 2 proteins: gp29 (WP_003407164.1)and, gp30 (WP_003407167.1). @@ -18,7 +18,7 @@ The gp29_gp30 system is present in a total of 35 different species. Among the 22k complete genomes of RefSeq, this system is present in 314 genomes (1.4 %). - +{width=750px} *Proportion of genome encoding the gp29_gp30 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/hachiman.md b/content/2.defense-systems/hachiman.md index e9a9b8efcc793cb6015a49db45737997751dff80..73f8bf606e3c1fb6c5193673bbe5f58dab2ab4a9 100644 --- a/content/2.defense-systems/hachiman.md +++ b/content/2.defense-systems/hachiman.md @@ -14,7 +14,7 @@ The Hachiman type I system is composed of 2 proteins: HamB and, HamA. Here is an example found in the RefSeq database: - +{width=750px} Hachiman system in the genome of *Mesorhizobium terrae* (GCF_008727715.1) is composed of 2 proteins: HamA_1 (WP_245317480.1)and, HamB (WP_065997554.1). @@ -24,7 +24,7 @@ The Hachiman system is present in a total of 518 different species. Among the 22k complete genomes of RefSeq, this system is present in 1361 genomes (6.0 %). - +{width=750px} *Proportion of genome encoding the Hachiman system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/isg15-like.md b/content/2.defense-systems/isg15-like.md index 45c0f37dede6b9342a4f7d2bf58df419e461ec4b..c32cb074c0b69f3956979303e86035ef1e025700 100644 --- a/content/2.defense-systems/isg15-like.md +++ b/content/2.defense-systems/isg15-like.md @@ -8,7 +8,7 @@ The ISG15-like system is composed of 4 proteins: BilD, BilC, BilB and, BilA. Here is an example found in the RefSeq database: - +{width=750px} ISG15-like system in the genome of *Rhizobium phaseoli* (GCF_001664285.1) is composed of 4 proteins: BilA (WP_064823699.1), BilB (WP_150124924.1), BilC (WP_150124925.1)and, BilD (WP_190304495.1). @@ -18,7 +18,7 @@ The ISG15-like system is present in a total of 28 different species. Among the 22k complete genomes of RefSeq, this system is present in 43 genomes (0.2 %). - +{width=750px} *Proportion of genome encoding the ISG15-like system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/kiwa.md b/content/2.defense-systems/kiwa.md index 7b896826dc0d1b5545c10e4d2a55a83c829a5954..efaf80560c2ce2f325270fd247de30ee66123f91 100644 --- a/content/2.defense-systems/kiwa.md +++ b/content/2.defense-systems/kiwa.md @@ -8,7 +8,7 @@ The Kiwa system is composed of 2 proteins: KwaA and, KwaB. Here is an example found in the RefSeq database: - +{width=750px} Kiwa system in the genome of *Aggregatibacter actinomycetemcomitans* (GCF_001690155.1) is composed of 2 proteins: KwaB (WP_005553122.1)and, KwaA (WP_005540311.1). @@ -18,7 +18,7 @@ The Kiwa system is present in a total of 355 different species. Among the 22k complete genomes of RefSeq, this system is present in 1104 genomes (4.8 %). - +{width=750px} *Proportion of genome encoding the Kiwa system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/lamassu-fam.md b/content/2.defense-systems/lamassu-fam.md index c59d61b0263aa9b080c87cd77876ace78fd493f4..6c9300db973fc3a350841f1b2c422885cf9f531a 100644 --- a/content/2.defense-systems/lamassu-fam.md +++ b/content/2.defense-systems/lamassu-fam.md @@ -20,48 +20,48 @@ The majority of the Lamassu-Fam systems are composed of 3 proteins: LmuA, LmuB a Here is an example of a Lamassu-Fam_Cap4_nuclease found in the RefSeq database: - +{width=750px} Lamassu-Fam_Cap4_nuclease subsystem in the genome of *Pseudomonas sp.* (GCF_016925675.1) is composed of 3 proteins: LmuB_SMC_Hydrolase_protease (WP_205519025.1), LmuC_acc_Cap4_nuclease (WP_205478326.1)and, LmuA_effector_Cap4_nuclease_II (WP_205478325.1). - +{width=750px} Lamassu-Fam_Mrr subsystem in the genome of *Escherichia coli* (GCF_011404895.1) is composed of 2 proteins: LmuA_effector_Mrr (WP_044864610.1)and, LmuB_SMC_Cap4_nuclease_II (WP_226199836.1). - +{width=750px} Lamassu-Fam_Hydrolase subsystem in the genome of *Caldisphaera lagunensis* (GCF_000317795.1) is composed of 2 proteins: LmuA_effector_Hydrolase (WP_015232255.1)and, LmuB_SMC_Hydrolase_protease (WP_015232260.1). - +{width=750px} Lamassu-Fam_Lipase subsystem in the genome of *Bradyrhizobium elkanii* (GCF_012871055.1) is composed of 2 proteins: LmuA_effector_Lipase (WP_172647146.1)and, LmuB_SMC_Lipase (WP_172647148.1). - +{width=750px} Lamassu-Fam_Hydrolase_protease subsystem in the genome of *Klebsiella pneumoniae* (GCF_022453565.1) is composed of 3 proteins: LmuB_SMC_Cap4_nuclease_II (WP_023301569.1), LmuA_effector_Protease (WP_023301563.1)and, LmuA_effector_Hydrolase (WP_023301562.1). - +{width=750px} Lamassu-Fam_Hypothetical subsystem in the genome of *Streptococcus constellatus* (GCF_016127875.1) is composed of 2 proteins: LmuB_SMC_Cap4_nuclease_II (WP_198458038.1)and, LmuA_effector_hypothetical (WP_198458040.1). - +{width=750px} Lamassu-Fam_Protease subsystem in the genome of *Azospirillum brasilense* (GCF_022023855.1) is composed of 2 proteins: LmuA_effector_Protease (WP_237905456.1)and, LmuB_SMC_Cap4_nuclease_II (WP_237905457.1). - +{width=750px} Lamassu-Fam_PDDEXK subsystem in the genome of *Janthinobacterium sp.* (GCF_000013625.1) is composed of 2 proteins: LmuA_effector_PDDEXK (WP_012078862.1)and, LmuB_SMC_Cap4_nuclease_II (WP_012078864.1). - +{width=750px} Lamassu-Fam_Sir2 subsystem in the genome of *Paenibacillus polymyxa* (GCF_022492955.1) is composed of 4 proteins: LmuB_SMC_Cap4_nuclease_II (WP_240753063.1), LmuB_SMC_Sir2 (WP_240753064.1), LmuC_acc_Sir2 (WP_240753066.1)and, LmuA_effector_Sir2 (WP_240753072.1). - +{width=750px} Lamassu-Fam_FMO subsystem in the genome of *Acinetobacter johnsonii* (GCF_021496365.1) is composed of 2 proteins: LmuA_effector_FMO (WP_234965678.1)and, LmuB_SMC_FMO (WP_234965680.1). - +{width=750px} Lamassu-Fam_Amidase subsystem in the genome of *Bradyrhizobium arachidis* (GCF_015291705.1) is composed of 2 proteins: LmuA_effector_Amidase (WP_143130692.1)and, LmuB_SMC_Amidase (WP_092217687.1). @@ -71,7 +71,7 @@ The Lamassu-Fam system is present in a total of 1189 different species. Among the 22k complete genomes of RefSeq, this system is present in 3939 genomes (17.3 %). - +{width=750px} *Proportion of genome encoding the Lamassu-Fam system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/lit.md b/content/2.defense-systems/lit.md index 8adf289ea156888cedaff28831dd48563ff29819..eaeea7b997be2ded30ed206b9783273b739256d7 100644 --- a/content/2.defense-systems/lit.md +++ b/content/2.defense-systems/lit.md @@ -8,7 +8,7 @@ The Lit system is composed of one protein: Lit. Here is an example found in the RefSeq database: - +{width=750px} Lit system in the genome of *Stenotrophomonas maltophilia* (GCF_012647025.1) is composed of 1 protein: Lit (WP_061201506.1). @@ -18,7 +18,7 @@ The Lit system is present in a total of 193 different species. Among the 22k complete genomes of RefSeq, this system is present in 455 genomes (2.0 %). - +{width=750px} *Proportion of genome encoding the Lit system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/menshen.md b/content/2.defense-systems/menshen.md index fe9536b9b6d30fe17deadfaa3530cc3071a1b19e..074b5d0d237ae591b70b46cf686f9e283da424b9 100644 --- a/content/2.defense-systems/menshen.md +++ b/content/2.defense-systems/menshen.md @@ -8,7 +8,7 @@ The Menshen system is composed of 3 proteins: NsnA, NsnB and, NsnC_2623244837. Here is an example found in the RefSeq database: - +{width=750px} Menshen system in the genome of *Citrobacter freundii* (GCF_003937345.2) is composed of 3 proteins: NsnA (WP_125363058.1), NsnB (WP_197964486.1)and, NsnC_2617187710 (WP_125363056.1). @@ -18,7 +18,7 @@ The Menshen system is present in a total of 247 different species. Among the 22k complete genomes of RefSeq, this system is present in 446 genomes (2.0 %). - +{width=750px} *Proportion of genome encoding the Menshen system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/mok_hok_sok.md b/content/2.defense-systems/mok_hok_sok.md index 8a714b241cc3b58b4964d467851b70371001c619..10da24f695874ba1d601fb43e3669f66bb58216a 100644 --- a/content/2.defense-systems/mok_hok_sok.md +++ b/content/2.defense-systems/mok_hok_sok.md @@ -8,7 +8,7 @@ The Mok_Hok_Sok system is composed of 2 proteins: Mok and, Hok. Here is an example found in the RefSeq database: - +{width=750px} Mok_Hok_Sok system in the genome of *Raoultella terrigena* (GCF_015571975.1) is composed of 2 proteins: Hok (WP_227629320.1)and, Mok (WP_227699927.1). @@ -18,7 +18,7 @@ The Mok_Hok_Sok system is present in a total of 57 different species. Among the 22k complete genomes of RefSeq, this system is present in 1687 genomes (7.4 %). - +{width=750px} *Proportion of genome encoding the Mok_Hok_Sok system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/mokosh.md b/content/2.defense-systems/mokosh.md index 062420f3b5dd24bc63ad4f3ac3e1380c04625cfc..d483740ff7c96cd29c6a01adc9f0c3ee7e878d8b 100644 --- a/content/2.defense-systems/mokosh.md +++ b/content/2.defense-systems/mokosh.md @@ -8,11 +8,11 @@ The Mokosh system have been describe in a total of 2 subsystems. Here is some example found in the RefSeq database: - +{width=750px} Mokosh_TypeI subsystem in the genome of *Vibrio alginolyticus* (GCF_022343125.1) is composed of 2 proteins: MkoB2 (WP_238970063.1)and, MkoA2 (WP_238970065.1). - +{width=750px} Mokosh_TypeII subsystem in the genome of *Shigella flexneri* (GCF_022354205.1) is composed of 1 protein: MkoC (WP_000344091.1). @@ -22,7 +22,7 @@ The Mokosh system is present in a total of 605 different species. Among the 22k complete genomes of RefSeq, this system is present in 2540 genomes (11.1 %). - +{width=750px} *Proportion of genome encoding the Mokosh system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* diff --git a/content/2.defense-systems/mqsrac.md b/content/2.defense-systems/mqsrac.md index bba701dbc17c1cc57f5b4086cacc42a1b995e069..f53b5ddd0b6c2f2a80ade4e3dc88fbdc5aa68756 100644 --- a/content/2.defense-systems/mqsrac.md +++ b/content/2.defense-systems/mqsrac.md @@ -8,7 +8,7 @@ The MqsRAC system is composed of 2 proteins: mqsR and, mqsC. Here is an example found in the RefSeq database: - +{width=750px} MqsRAC system in the genome of *Escherichia coli* (GCF_900636115.1) is composed of 2 proteins: mqsR (WP_024222007.1)and, mqsC (WP_021568458.1). @@ -18,7 +18,7 @@ The MqsRAC system is present in a total of 18 different species. Among the 22k complete genomes of RefSeq, this system is present in 26 genomes (0.1 %). - +{width=750px} *Proportion of genome encoding the MqsRAC system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/nhi.md b/content/2.defense-systems/nhi.md index 70efc5bd9bbcdcd72f96a060872b249b2fc9794e..646542e62eeca1f3af15dd5572b3572ba2c1d150 100644 --- a/content/2.defense-systems/nhi.md +++ b/content/2.defense-systems/nhi.md @@ -8,7 +8,7 @@ The Nhi system is composed of one protein: Nhi. Here is an example found in the RefSeq database: - +{width=750px} Nhi system in the genome of *Enterococcus avium* (GCF_003711125.1) is composed of 1 protein: Nhi (WP_148712513.1). @@ -18,7 +18,7 @@ The Nhi system is present in a total of 56 different species. Among the 22k complete genomes of RefSeq, this system is present in 202 genomes (0.9 %). - +{width=750px} *Proportion of genome encoding the Nhi system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/nixi.md b/content/2.defense-systems/nixi.md index 9c182e3ec82946e75b55bdd2603d30a09e425020..829d14723d5a150931dc1c95969c2ec36ae0f4aa 100644 --- a/content/2.defense-systems/nixi.md +++ b/content/2.defense-systems/nixi.md @@ -8,7 +8,7 @@ The NixI system is composed of 2 proteins: NixI and, Stix. Here is an example found in the RefSeq database: - +{width=750px} NixI system in the genome of *Vibrio cholerae* (GCF_009646135.1) is composed of 2 proteins: NixI (WP_001147214.1)and, Stix (WP_000628297.1). @@ -18,7 +18,7 @@ The NixI system is present in a total of 8 different species. Among the 22k complete genomes of RefSeq, this system is present in 19 genomes (0.1 %). - +{width=750px} *Proportion of genome encoding the NixI system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/nlr.md b/content/2.defense-systems/nlr.md index 05e7f48d7bc99d6458c4f2849bd802ec5d0d40af..f3e3ab6d771d09792353be74d9378ec46df1970c 100644 --- a/content/2.defense-systems/nlr.md +++ b/content/2.defense-systems/nlr.md @@ -8,11 +8,11 @@ The NLR system have been describe in a total of 2 subsystems. Here is some example found in the RefSeq database: - +{width=750px} NLR_like_bNACHT01 subsystem in the genome of *Pseudomonas psychrotolerans* (GCF_001913135.1) is composed of 1 protein: NLR_like_bNACHT01 (WP_074528296.1). - +{width=750px} NLR_like_bNACHT09 subsystem in the genome of *Escherichia coli* (GCF_900636105.1) is composed of 1 protein: NLR_like_bNACHT09 (WP_089572057.1). @@ -22,7 +22,7 @@ The NLR system is present in a total of 186 different species. Among the 22k complete genomes of RefSeq, this system is present in 453 genomes (2.0 %). - +{width=750px} *Proportion of genome encoding the NLR system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* diff --git a/content/2.defense-systems/old_exonuclease.md b/content/2.defense-systems/old_exonuclease.md index e079a3efeff07e193b8fffd8f708bac36c7252f2..cd08c3bba4a36f9b73dbfefe3fd30a0db2be2835 100644 --- a/content/2.defense-systems/old_exonuclease.md +++ b/content/2.defense-systems/old_exonuclease.md @@ -8,7 +8,7 @@ The Old_exonuclease system is composed of one protein: Old_exonuclease. Here is an example found in the RefSeq database: - +{width=750px} Old_exonuclease system in the genome of *Escherichia coli* (GCF_016904335.1) is composed of 1 protein: Old_exonuclease (WP_015979595.1). @@ -18,7 +18,7 @@ The Old_exonuclease system is present in a total of 53 different species. Among the 22k complete genomes of RefSeq, this system is present in 102 genomes (0.4 %). - +{width=750px} *Proportion of genome encoding the Old_exonuclease system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/olokun.md b/content/2.defense-systems/olokun.md index d57d1225e6031d68075b0ef7e8eaf6fd18d88096..8c001e0c1f8c9a2606e722482e991349433fc697 100644 --- a/content/2.defense-systems/olokun.md +++ b/content/2.defense-systems/olokun.md @@ -8,7 +8,7 @@ The Olokun system is composed of 2 proteins: OloA and, OloB. Here is an example found in the RefSeq database: - +{width=750px} Olokun system in the genome of *Vibrio cyclitrophicus* (GCF_023206035.1) is composed of 2 proteins: OloA (WP_016800143.1)and, OloB (WP_029203700.1). @@ -18,7 +18,7 @@ The Olokun system is present in a total of 132 different species. Among the 22k complete genomes of RefSeq, this system is present in 252 genomes (1.1 %). - +{width=750px} *Proportion of genome encoding the Olokun system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pago.md b/content/2.defense-systems/pago.md index 6b69e61f9f7c6137dfc0d47e265a25e1d65cd626..ef7270152bf84e72dd20a0f75aa73827c3c8c0db 100644 --- a/content/2.defense-systems/pago.md +++ b/content/2.defense-systems/pago.md @@ -8,7 +8,7 @@ The pAgo system is composed of one protein: pAgo_Short. Here is an example found in the RefSeq database: - +{width=750px} pAgo system in the genome of *Ensifer adhaerens* (GCF_020405145.1) is composed of 1 protein: pAgo_LongB (WP_218685258.1). @@ -18,7 +18,7 @@ The pAgo system is present in a total of 435 different species. Among the 22k complete genomes of RefSeq, this system is present in 598 genomes (2.6 %). - +{width=750px} *Proportion of genome encoding the pAgo system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-lambda-1.md b/content/2.defense-systems/pd-lambda-1.md index 0552f8e358ed559bcb67880faf94d0b6a78597e1..48d92872dd65ac30327ffe166b859cfbb26c56dc 100644 --- a/content/2.defense-systems/pd-lambda-1.md +++ b/content/2.defense-systems/pd-lambda-1.md @@ -8,7 +8,7 @@ The PD-Lambda-1 system is composed of one protein: PD-Lambda-1. Here is an example found in the RefSeq database: - +{width=750px} PD-Lambda-1 system in the genome of *Olleya sp.* (GCF_002831645.1) is composed of 1 protein: PD-Lambda-1 (WP_101017806.1). @@ -18,7 +18,7 @@ The PD-Lambda-1 system is present in a total of 445 different species. Among the 22k complete genomes of RefSeq, this system is present in 1323 genomes (5.8 %). - +{width=750px} *Proportion of genome encoding the PD-Lambda-1 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-lambda-2.md b/content/2.defense-systems/pd-lambda-2.md index 832810be62b9d7a750f3e1b7efad83fcbd9e14c6..a915e3b11ff601fa45efa6126a909ae645758853 100644 --- a/content/2.defense-systems/pd-lambda-2.md +++ b/content/2.defense-systems/pd-lambda-2.md @@ -8,7 +8,7 @@ The PD-Lambda-2 system is composed of 3 proteins: PD-Lambda-2_C, PD-Lambda-2_B a Here is an example found in the RefSeq database: - +{width=750px} PD-Lambda-2 system in the genome of *Pseudomonas aeruginosa* (GCF_013341295.1) is composed of 3 proteins: PD-Lambda-2_C (WP_023115149.1), PD-Lambda-2_B (WP_014833925.1)and, PD-Lambda-2_A (WP_003116393.1). @@ -18,7 +18,7 @@ The PD-Lambda-2 system is present in a total of 52 different species. Among the 22k complete genomes of RefSeq, this system is present in 122 genomes (0.5 %). - +{width=750px} *Proportion of genome encoding the PD-Lambda-2 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-lambda-3.md b/content/2.defense-systems/pd-lambda-3.md index 549818896abd816d2135c6ffb9c046e872a2e353..ae0eb141680bdcee00ec631f2d815fb9e73ebd08 100644 --- a/content/2.defense-systems/pd-lambda-3.md +++ b/content/2.defense-systems/pd-lambda-3.md @@ -8,7 +8,7 @@ The PD-Lambda-3 system is composed of 2 proteins: PD-Lambda-3_B and, PD-Lambda-3 Here is an example found in the RefSeq database: - +{width=750px} PD-Lambda-3 system in the genome of *Serratia rubidaea* (GCF_900478395.1) is composed of 2 proteins: PD-Lambda-3_A (WP_227673955.1)and, PD-Lambda-3_B (WP_047063039.1). @@ -18,7 +18,7 @@ The PD-Lambda-3 system is present in a total of 24 different species. Among the 22k complete genomes of RefSeq, this system is present in 74 genomes (0.3 %). - +{width=750px} *Proportion of genome encoding the PD-Lambda-3 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-lambda-4.md b/content/2.defense-systems/pd-lambda-4.md index b4db24c48d108b4a65f75ddd1a33fba9f44a4f68..f8cc32121f3e1b1e0ba87640ee4eebc7f3e70d5e 100644 --- a/content/2.defense-systems/pd-lambda-4.md +++ b/content/2.defense-systems/pd-lambda-4.md @@ -8,7 +8,7 @@ The PD-Lambda-4 system is composed of 2 proteins: PD-Lambda-4_A and, PD-Lambda-4 Here is an example found in the RefSeq database: - +{width=750px} PD-Lambda-4 system in the genome of *Enterobacter asburiae* (GCF_023023265.1) is composed of 2 proteins: PD-Lambda-4_A (WP_246916891.1)and, PD-Lambda-4_B (WP_241182936.1). @@ -18,7 +18,7 @@ The PD-Lambda-4 system is present in a total of 13 different species. Among the 22k complete genomes of RefSeq, this system is present in 75 genomes (0.3 %). - +{width=750px} *Proportion of genome encoding the PD-Lambda-4 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-lambda-5.md b/content/2.defense-systems/pd-lambda-5.md index cbcbd308ea859cc84354b887f46b863e55ceb340..97fc1bbe73494f9e772daa7d3b49769606aa6794 100644 --- a/content/2.defense-systems/pd-lambda-5.md +++ b/content/2.defense-systems/pd-lambda-5.md @@ -8,7 +8,7 @@ The PD-Lambda-5 system is composed of 2 proteins: PD-Lambda-5_A and, PD-Lambda-5 Here is an example found in the RefSeq database: - +{width=750px} PD-Lambda-5 system in the genome of *Chromobacterium rhizoryzae* (GCF_020544465.1) is composed of 2 proteins: PD-Lambda-5_B (WP_227108065.1)and, PD-Lambda-5_A (WP_227108067.1). @@ -18,7 +18,7 @@ The PD-Lambda-5 system is present in a total of 210 different species. Among the 22k complete genomes of RefSeq, this system is present in 361 genomes (1.6 %). - +{width=750px} *Proportion of genome encoding the PD-Lambda-5 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-lambda-6.md b/content/2.defense-systems/pd-lambda-6.md index 7905b3c6433d2844f1e95765898dc44409614057..aac567c22758a469e38ba39b6074095c3d48efaa 100644 --- a/content/2.defense-systems/pd-lambda-6.md +++ b/content/2.defense-systems/pd-lambda-6.md @@ -8,7 +8,7 @@ The PD-Lambda-6 system is composed of one protein: PD-Lambda-6. Here is an example found in the RefSeq database: - +{width=750px} PD-Lambda-6 system in the genome of *Escherichia albertii* (GCF_003864095.1) is composed of 1 protein: PD-Lambda-6 (WP_125059614.1). @@ -18,7 +18,7 @@ The PD-Lambda-6 system is present in a total of 12 different species. Among the 22k complete genomes of RefSeq, this system is present in 21 genomes (0.1 %). - +{width=750px} *Proportion of genome encoding the PD-Lambda-6 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-t4-1.md b/content/2.defense-systems/pd-t4-1.md index a6194dee07102f74231d7ce9db9cf656456af84a..5c0d3fde6791f656604bfc049eca0967a68c6115 100644 --- a/content/2.defense-systems/pd-t4-1.md +++ b/content/2.defense-systems/pd-t4-1.md @@ -8,7 +8,7 @@ The PD-T4-1 system is composed of one protein: PD-T4-1. Here is an example found in the RefSeq database: - +{width=750px} PD-T4-1 system in the genome of *Bradyrhizobium diazoefficiens* (GCF_016616885.1) is composed of 1 protein: PD-T4-1 (WP_200471933.1). @@ -18,7 +18,7 @@ The PD-T4-1 system is present in a total of 38 different species. Among the 22k complete genomes of RefSeq, this system is present in 209 genomes (0.9 %). - +{width=750px} *Proportion of genome encoding the PD-T4-1 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-t4-10.md b/content/2.defense-systems/pd-t4-10.md index 8b5a2c6cf5c2d065074f1a2c3e72f40b05443f50..680108635205170ccd86665a9fc71b2afaf8aa3f 100644 --- a/content/2.defense-systems/pd-t4-10.md +++ b/content/2.defense-systems/pd-t4-10.md @@ -8,7 +8,7 @@ The PD-T4-10 system is composed of 2 proteins: PD-T4-10_B and, PD-T4-10_A. Here is an example found in the RefSeq database: - +{width=750px} PD-T4-10 system in the genome of *Salmonella enterica* (GCF_022559465.1) is composed of 2 proteins: PD-T4-10_A (WP_109288182.1)and, PD-T4-10_B (WP_001585426.1). @@ -18,7 +18,7 @@ The PD-T4-10 system is present in a total of 40 different species. Among the 22k complete genomes of RefSeq, this system is present in 68 genomes (0.3 %). - +{width=750px} *Proportion of genome encoding the PD-T4-10 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-t4-2.md b/content/2.defense-systems/pd-t4-2.md index ea7510b5b504b1b639aad39fc5a68ffa1862cdeb..3b2edc7ad26b473be6c57b8f7fc0ed22c5d119ca 100644 --- a/content/2.defense-systems/pd-t4-2.md +++ b/content/2.defense-systems/pd-t4-2.md @@ -8,7 +8,7 @@ The PD-T4-2 system is composed of 2 proteins: PD-T4-2_B and, PD-T4-2_A. Here is an example found in the RefSeq database: - +{width=750px} PD-T4-2 system in the genome of *Microcystis viridis* (GCF_003945305.1) is composed of 2 proteins: PD-T4-2_B (WP_164517006.1)and, PD-T4-2_A (WP_125731928.1). @@ -18,7 +18,7 @@ The PD-T4-2 system is present in a total of 28 different species. Among the 22k complete genomes of RefSeq, this system is present in 33 genomes (0.1 %). - +{width=750px} *Proportion of genome encoding the PD-T4-2 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-t4-3.md b/content/2.defense-systems/pd-t4-3.md index 7891ae060e2ac6527d3ddab1b0847c4938aa2c0d..3300d5618b3636ff31ef2a37785a1176ed947cdd 100644 --- a/content/2.defense-systems/pd-t4-3.md +++ b/content/2.defense-systems/pd-t4-3.md @@ -8,7 +8,7 @@ The PD-T4-3 system is composed of one protein: PD-T4-3. Here is an example found in the RefSeq database: - +{width=750px} PD-T4-3 system in the genome of *Salmonella enterica* (GCF_009664795.1) is composed of 1 protein: PD-T4-3 (WP_000353908.1). @@ -18,7 +18,7 @@ The PD-T4-3 system is present in a total of 139 different species. Among the 22k complete genomes of RefSeq, this system is present in 1313 genomes (5.8 %). - +{width=750px} *Proportion of genome encoding the PD-T4-3 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-t4-4.md b/content/2.defense-systems/pd-t4-4.md index 101d7af9b28d4042641712f58142e2f280c622ba..0e0658e25aba5d320b476e52a833a6621e77ca12 100644 --- a/content/2.defense-systems/pd-t4-4.md +++ b/content/2.defense-systems/pd-t4-4.md @@ -8,7 +8,7 @@ The PD-T4-4 system is composed of 2 proteins: PD-T4-4_A and, PD-T4-4_B. Here is an example found in the RefSeq database: - +{width=750px} PD-T4-4 system in the genome of *Escherichia coli* (GCF_013376895.1) is composed of 2 proteins: PD-T4-4_B (WP_176670803.1)and, PD-T4-4_A (WP_027920142.1). @@ -18,7 +18,7 @@ The PD-T4-4 system is present in a total of 40 different species. Among the 22k complete genomes of RefSeq, this system is present in 53 genomes (0.2 %). - +{width=750px} *Proportion of genome encoding the PD-T4-4 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-t4-5.md b/content/2.defense-systems/pd-t4-5.md index 4af680d5940034c05e85cf99569c91a313fb2a6a..793ea2985a276b3dac889afbf292810a90318196 100644 --- a/content/2.defense-systems/pd-t4-5.md +++ b/content/2.defense-systems/pd-t4-5.md @@ -8,7 +8,7 @@ The PD-T4-5 system is composed of one protein: PD-T4-5. Here is an example found in the RefSeq database: - +{width=750px} PD-T4-5 system in the genome of *Achromobacter sp.* (GCF_020541125.1) is composed of 1 protein: PD-T4-5 (WP_180098530.1). @@ -18,7 +18,7 @@ The PD-T4-5 system is present in a total of 113 different species. Among the 22k complete genomes of RefSeq, this system is present in 587 genomes (2.6 %). - +{width=750px} *Proportion of genome encoding the PD-T4-5 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-t4-6.md b/content/2.defense-systems/pd-t4-6.md index a385ab35c4e0fcc11f83fbbe2dc37c3cc1742df3..a245f9f9915fa31f95aaaf9931114443e69ad978 100644 --- a/content/2.defense-systems/pd-t4-6.md +++ b/content/2.defense-systems/pd-t4-6.md @@ -8,7 +8,7 @@ The PD-T4-6 system is composed of one protein: PD-T4-6. Here is an example found in the RefSeq database: - +{width=750px} PD-T4-6 system in the genome of *Pseudomonas aeruginosa* (GCF_016584725.1) is composed of 1 protein: PD-T4-6 (WP_023875836.1). @@ -18,7 +18,7 @@ The PD-T4-6 system is present in a total of 18 different species. Among the 22k complete genomes of RefSeq, this system is present in 88 genomes (0.4 %). - +{width=750px} *Proportion of genome encoding the PD-T4-6 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-t4-7.md b/content/2.defense-systems/pd-t4-7.md index aa90a1baa35e8838cf2f5886d676efe50f9b76eb..4e7a692de6430a68640cc660c9914e3a8670e591 100644 --- a/content/2.defense-systems/pd-t4-7.md +++ b/content/2.defense-systems/pd-t4-7.md @@ -8,7 +8,7 @@ The PD-T4-7 system is composed of one protein: PD-T4-7. Here is an example found in the RefSeq database: - +{width=750px} PD-T4-7 system in the genome of *Providencia alcalifaciens* (GCF_915401745.1) is composed of 1 protein: PD-T4-7 (WP_036975088.1). @@ -18,7 +18,7 @@ The PD-T4-7 system is present in a total of 97 different species. Among the 22k complete genomes of RefSeq, this system is present in 156 genomes (0.7 %). - +{width=750px} *Proportion of genome encoding the PD-T4-7 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-t4-8.md b/content/2.defense-systems/pd-t4-8.md index f25ba6a4d6c95ece27c978eec41a3d80ca3e580b..a7262ef3a7204dfdb23f5aa1a5163a189487ac30 100644 --- a/content/2.defense-systems/pd-t4-8.md +++ b/content/2.defense-systems/pd-t4-8.md @@ -8,7 +8,7 @@ The PD-T4-8 system is composed of one protein: PD-T4-8. Here is an example found in the RefSeq database: - +{width=750px} PD-T4-8 system in the genome of *Pectobacterium brasiliense* (GCF_001932635.1) is composed of 1 protein: PD-T4-8 (WP_075277998.1). @@ -18,7 +18,7 @@ The PD-T4-8 system is present in a total of 48 different species. Among the 22k complete genomes of RefSeq, this system is present in 91 genomes (0.4 %). - +{width=750px} *Proportion of genome encoding the PD-T4-8 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-t4-9.md b/content/2.defense-systems/pd-t4-9.md index 70e9b201f0bf3560b485a851a104439d1724e9fe..0e0493c2bfe0def215457ef02dd3ff77df84ead0 100644 --- a/content/2.defense-systems/pd-t4-9.md +++ b/content/2.defense-systems/pd-t4-9.md @@ -8,7 +8,7 @@ The PD-T4-9 system is composed of 3 proteins: PD-T4-9_C, PD-T4-9_B and, PD-T4-9_ Here is an example found in the RefSeq database: - +{width=750px} PD-T4-9 system in the genome of *Escherichia coli* (GCF_018223665.1) is composed of 3 proteins: PD-T4-9_A (WP_061089969.1), PD-T4-9_B (WP_061089970.1)and, PD-T4-9_C (WP_061089971.1). @@ -18,7 +18,7 @@ The PD-T4-9 system is present in a total of 93 different species. Among the 22k complete genomes of RefSeq, this system is present in 148 genomes (0.6 %). - +{width=750px} *Proportion of genome encoding the PD-T4-9 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-t7-1.md b/content/2.defense-systems/pd-t7-1.md index 87d8bab5e1ff12010e824cd8d899c96c78b5d756..b62d901488eec1fab91741be95f03ec2d668b628 100644 --- a/content/2.defense-systems/pd-t7-1.md +++ b/content/2.defense-systems/pd-t7-1.md @@ -8,7 +8,7 @@ The PD-T7-1 system is composed of one protein: PD-T7-1. Here is an example found in the RefSeq database: - +{width=750px} PD-T7-1 system in the genome of *Escherichia coli* (GCF_007833255.1) is composed of 1 protein: PD-T7-1 (WP_000008839.1). @@ -18,7 +18,7 @@ The PD-T7-1 system is present in a total of 136 different species. Among the 22k complete genomes of RefSeq, this system is present in 755 genomes (3.3 %). - +{width=750px} *Proportion of genome encoding the PD-T7-1 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-t7-2.md b/content/2.defense-systems/pd-t7-2.md index fe98a596bb88c399508dfbe24df408f206b65755..ff6717510113a044d740ec7b13934f21300bf65f 100644 --- a/content/2.defense-systems/pd-t7-2.md +++ b/content/2.defense-systems/pd-t7-2.md @@ -8,7 +8,7 @@ The PD-T7-2 system is composed of 2 proteins: PD-T7-2_A and, PD-T7-2_B. Here is an example found in the RefSeq database: - +{width=750px} PD-T7-2 system in the genome of *Sphingobium amiense* (GCF_003967075.1) is composed of 2 proteins: PD-T7-2_B (WP_066704003.1)and, PD-T7-2_A (WP_066704000.1). @@ -18,7 +18,7 @@ The PD-T7-2 system is present in a total of 606 different species. Among the 22k complete genomes of RefSeq, this system is present in 1535 genomes (6.7 %). - +{width=750px} *Proportion of genome encoding the PD-T7-2 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-t7-3.md b/content/2.defense-systems/pd-t7-3.md index 9037abeec785c5f41ae922f8ef636ea2247d9bdc..eb1ab03a8546370a30cddbcf7f0c46618910edc9 100644 --- a/content/2.defense-systems/pd-t7-3.md +++ b/content/2.defense-systems/pd-t7-3.md @@ -8,7 +8,7 @@ The PD-T7-3 system is composed of one protein: PD-T7-3. Here is an example found in the RefSeq database: - +{width=750px} PD-T7-3 system in the genome of *Alistipes sp.* (GCF_009557455.1) is composed of 1 protein: PD-T7-3 (WP_153498146.1). @@ -18,7 +18,7 @@ The PD-T7-3 system is present in a total of 127 different species. Among the 22k complete genomes of RefSeq, this system is present in 215 genomes (0.9 %). - +{width=750px} *Proportion of genome encoding the PD-T7-3 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-t7-4.md b/content/2.defense-systems/pd-t7-4.md index 6f76ac013fb11e9ce3f1763c0713212077bac15c..b3bc355998a136a38c6cb184885a3b70484fd7ab 100644 --- a/content/2.defense-systems/pd-t7-4.md +++ b/content/2.defense-systems/pd-t7-4.md @@ -8,7 +8,7 @@ The PD-T7-4 system is composed of one protein: PD-T7-4. Here is an example found in the RefSeq database: - +{width=750px} PD-T7-4 system in the genome of *Parashewanella tropica* (GCF_004358445.1) is composed of 1 protein: PD-T7-4 (WP_133406898.1). @@ -18,7 +18,7 @@ The PD-T7-4 system is present in a total of 204 different species. Among the 22k complete genomes of RefSeq, this system is present in 501 genomes (2.2 %). - +{width=750px} *Proportion of genome encoding the PD-T7-4 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pd-t7-5.md b/content/2.defense-systems/pd-t7-5.md index aafcaccb9f52ed577c240f55005a91c8442b0c32..3efb4abe356472e0aeb12f3bd79a06c3c4a7e4f2 100644 --- a/content/2.defense-systems/pd-t7-5.md +++ b/content/2.defense-systems/pd-t7-5.md @@ -8,7 +8,7 @@ The PD-T7-5 system is composed of one protein: PD-T7-5. Here is an example found in the RefSeq database: - +{width=750px} PD-T7-5 system in the genome of *Bacillus cereus* (GCF_001941885.1) is composed of 1 protein: PD-T7-5 (WP_075395673.1). @@ -18,7 +18,7 @@ The PD-T7-5 system is present in a total of 128 different species. Among the 22k complete genomes of RefSeq, this system is present in 363 genomes (1.6 %). - +{width=750px} *Proportion of genome encoding the PD-T7-5 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pfiat.md b/content/2.defense-systems/pfiat.md index 3bdf29b2699d4d8eb628e2a40f422a1c7c12c353..79a63d61b0539763fa6967178686f23ca93f32b3 100644 --- a/content/2.defense-systems/pfiat.md +++ b/content/2.defense-systems/pfiat.md @@ -8,7 +8,7 @@ The PfiAT system is composed of 2 proteins: PfiA and, PfiT. Here is an example found in the RefSeq database: - +{width=750px} PfiAT system in the genome of *Pseudomonas amygdali* (GCF_023207855.1) is composed of 2 proteins: PfiT (WP_096134620.1)and, PfiA (WP_057431469.1). @@ -18,7 +18,7 @@ The PfiAT system is present in a total of 261 different species. Among the 22k complete genomes of RefSeq, this system is present in 819 genomes (3.6 %). - +{width=750px} *Proportion of genome encoding the PfiAT system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pif.md b/content/2.defense-systems/pif.md index 8669ca651f05c5cd26c90f3c90fb29f0b58a2341..706882d35c2fc386364a1c1bd4247b806ffd5bae 100644 --- a/content/2.defense-systems/pif.md +++ b/content/2.defense-systems/pif.md @@ -8,7 +8,7 @@ The Pif system is composed of 2 proteins: PifC and, PifA. Here is an example found in the RefSeq database: - +{width=750px} Pif system in the genome of *Escherichia coli* (GCF_018628815.1) is composed of 2 proteins: PifA (WP_000698737.1)and, PifC (WP_000952217.1). @@ -18,7 +18,7 @@ The Pif system is present in a total of 28 different species. Among the 22k complete genomes of RefSeq, this system is present in 143 genomes (0.6 %). - +{width=750px} *Proportion of genome encoding the Pif system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/prrc.md b/content/2.defense-systems/prrc.md index ee6d3b780a63926b9194ffae8d68e49579dc786f..3d03da2c561364989e19d8f03d51bb3bb74277de 100644 --- a/content/2.defense-systems/prrc.md +++ b/content/2.defense-systems/prrc.md @@ -8,7 +8,7 @@ The PrrC system is composed of 4 proteins: EcoprrI, Type_I_S, PrrC and, Type_I_R Here is an example found in the RefSeq database: - +{width=750px} PrrC system in the genome of *Streptococcus canis* (GCF_900636575.1) is composed of 4 proteins: Type_I_REases (WP_003046543.1), PrrC (WP_003046540.1), Type_I_S (WP_129544911.1)and, Type_I_MTases (WP_003046534.1). @@ -18,7 +18,7 @@ The PrrC system is present in a total of 285 different species. Among the 22k complete genomes of RefSeq, this system is present in 705 genomes (3.1 %). - +{width=750px} *Proportion of genome encoding the PrrC system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/psyrta.md b/content/2.defense-systems/psyrta.md index 4460b4c4848fafe6c75ce2480c0ab493145d1d93..af4ef67875458bb867a65e49bc0cacc580adfc7c 100644 --- a/content/2.defense-systems/psyrta.md +++ b/content/2.defense-systems/psyrta.md @@ -8,7 +8,7 @@ The PsyrTA system is composed of 2 proteins: PsyrT and, PsyrA. Here is an example found in the RefSeq database: - +{width=750px} PsyrTA system in the genome of *Photorhabdus laumondii* (GCF_003343225.1) is composed of 2 proteins: PsyrT (WP_109791883.1)and, PsyrA (WP_113049635.1). @@ -18,7 +18,7 @@ The PsyrTA system is present in a total of 281 different species. Among the 22k complete genomes of RefSeq, this system is present in 1435 genomes (6.3 %). - +{width=750px} *Proportion of genome encoding the PsyrTA system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/pycsar.md b/content/2.defense-systems/pycsar.md index b730c49b9ea2d96141c6b9aa52a8ae739438ebd0..24010528cd571ce391c8a024e0dc6ad55c650675 100644 --- a/content/2.defense-systems/pycsar.md +++ b/content/2.defense-systems/pycsar.md @@ -8,7 +8,7 @@ The Pycsar system is composed of 2 proteins: AG_cyclase and, Effector_TIR. Here is an example found in the RefSeq database: - +{width=750px} Pycsar system in the genome of *Staphylococcus aureus* (GCF_003186105.1) is composed of 2 proteins: AG_cyclase (WP_065316016.1)and, 2TM_5 (WP_000073144.1). @@ -18,7 +18,7 @@ The Pycsar system is present in a total of 276 different species. Among the 22k complete genomes of RefSeq, this system is present in 559 genomes (2.5 %). - +{width=750px} *Proportion of genome encoding the Pycsar system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/radar.md b/content/2.defense-systems/radar.md index 65a8b76634ce9f7ac17dcbb88c0d523c69f39a22..2d34df6bf53f30f74757bcc38f8ee3422dc6c3a4 100644 --- a/content/2.defense-systems/radar.md +++ b/content/2.defense-systems/radar.md @@ -17,11 +17,11 @@ The RADAR system have been describe in a total of 2 subsystems. Here is some example found in the RefSeq database: - +{width=750px} radar_I subsystem in the genome of *Dickeya dianthicola* (GCF_014893095.1) is composed of 2 proteins: rdrB_I (WP_192988590.1)and, rdrA_I (WP_192988591.1). - +{width=750px} radar_II subsystem in the genome of *Klebsiella aerogenes* (GCF_008693885.1) is composed of 3 proteins: rdrD_II (WP_015705078.1), rdrB_II (WP_015705077.1)and, rdrA_II (WP_015705076.1). @@ -31,7 +31,7 @@ The RADAR system is present in a total of 39 different species. Among the 22k complete genomes of RefSeq, this system is present in 135 genomes (0.6 %). - +{width=750px} *Proportion of genome encoding the RADAR system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* diff --git a/content/2.defense-systems/retron.md b/content/2.defense-systems/retron.md index 8e0a8d3bc132aeb1fee9e02ef08a7139390b469c..43ecdd8c848f12552fa6cb72505ca34edcd3b1bd 100644 --- a/content/2.defense-systems/retron.md +++ b/content/2.defense-systems/retron.md @@ -24,51 +24,51 @@ The Retron system have been describe in a total of 16 subsystems. Here is some example found in the RefSeq database: - +{width=750px} Retron_II subsystem in the genome of *Klebsiella pneumoniae* (GCF_904866255.1) is composed of 2 proteins: NDT2 (WP_057222224.1)and, RT_Tot (WP_048289034.1). - +{width=750px} Retron_IV subsystem in the genome of *Aliivibrio fischeri* (GCF_000011805.1) is composed of 2 proteins: RT_Tot (WP_011261677.1)and, 2TM (WP_236727775.1). - +{width=750px} Retron_I_A subsystem in the genome of *Vibrio harveyi* (GCF_009184745.1) is composed of 3 proteins: RT_Tot (WP_152163686.1), ATPase_TypeIA (WP_152163687.1)and, HNH_TIGR02646 (WP_152163688.1). - +{width=750px} Retron_I_B subsystem in the genome of *Vibrio vulnificus* (GCF_009665475.1) is composed of 2 proteins: ATPase_TOPRIM_COG3593 (WP_103277404.1)and, RT_Tot (WP_043877188.1). - +{width=750px} Retron_I_C subsystem in the genome of *Listeria monocytogenes* (GCF_905219385.1) is composed of 1 protein: RT_1_C2 (WP_003726410.1). - +{width=750px} Retron_V subsystem in the genome of *Proteus terrae* (GCF_013171285.1) is composed of 2 proteins: CSD (WP_004244726.1)and, RT_Tot (WP_109418979.1). - +{width=750px} Retron_VI subsystem in the genome of *Pseudomonas eucalypticola* (GCF_013374995.1) is composed of 2 proteins: HTH (WP_245217789.1)and, RT_Tot (WP_176571652.1). - +{width=750px} Retron_VII_1 subsystem in the genome of *Pseudoxanthomonas mexicana* (GCF_014397415.1) is composed of 1 protein: RT_7_A1 (WP_187572543.1). - +{width=750px} Retron_VII_2 subsystem in the genome of *Bacillus mycoides* (GCF_018742105.1) is composed of 2 proteins: DUF3800 (WP_215564565.1)and, RT_Tot (WP_215564572.1). - +{width=750px} Retron_XI subsystem in the genome of *Planococcus kocurii* (GCF_001465835.2) is composed of 1 protein: RT_11 (WP_058386256.1). - +{width=750px} Retron_XII subsystem in the genome of *Stenotrophomonas acidaminiphila* (GCF_014109845.1) is composed of 1 protein: RT_12 (WP_182333825.1). - +{width=750px} Retron_XIII subsystem in the genome of *Delftia acidovorans* (GCF_016026535.1) is composed of 3 proteins: ARM (WP_197944577.1), WHSWIM (WP_197944578.1)and, RT_Tot (WP_065344905.1). @@ -78,7 +78,7 @@ The Retron system is present in a total of 731 different species. Among the 22k complete genomes of RefSeq, this system is present in 2601 genomes (11.4 %). - +{width=750px} *Proportion of genome encoding the Retron system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* diff --git a/content/2.defense-systems/rexab.md b/content/2.defense-systems/rexab.md index fadfb5b268e241fd2665ed86121d903002b24e74..b4fde65d60dc433860ca051dece296bac034a454 100644 --- a/content/2.defense-systems/rexab.md +++ b/content/2.defense-systems/rexab.md @@ -8,7 +8,7 @@ The RexAB system is composed of 2 proteins: RexA and, RexB. Here is an example found in the RefSeq database: - +{width=750px} RexAB system in the genome of *Escherichia coli* (GCF_008033315.1) is composed of 2 proteins: RexA (WP_000788349.1)and, RexB (WP_001245922.1). @@ -18,7 +18,7 @@ The RexAB system is present in a total of 17 different species. Among the 22k complete genomes of RefSeq, this system is present in 73 genomes (0.3 %). - +{width=750px} *Proportion of genome encoding the RexAB system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/rloc.md b/content/2.defense-systems/rloc.md index f67db9812e7180e6dd30c96a2f7c93c6467fef1c..989dd97562016042aa17c725ad12839eb656f36b 100644 --- a/content/2.defense-systems/rloc.md +++ b/content/2.defense-systems/rloc.md @@ -8,7 +8,7 @@ The RloC system is composed of one protein: RloC. Here is an example found in the RefSeq database: - +{width=750px} RloC system in the genome of *Flavobacterium arcticum* (GCF_003344925.1) is composed of 1 protein: RloC (WP_114676820.1). @@ -18,7 +18,7 @@ The RloC system is present in a total of 803 different species. Among the 22k complete genomes of RefSeq, this system is present in 1961 genomes (8.6 %). - +{width=750px} *Proportion of genome encoding the RloC system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/rm.md b/content/2.defense-systems/rm.md index 6eb57cdbbfdb3f32c65dbb39306484edd9ec544b..081f1b2fd773009ee264e3f84283c4bbb9192238 100644 --- a/content/2.defense-systems/rm.md +++ b/content/2.defense-systems/rm.md @@ -8,23 +8,23 @@ The RM system have been describe in a total of 5 subsystems. Here is some example found in the RefSeq database: - +{width=750px} RM_Type_I subsystem in the genome of *Aeromonas veronii* (GCF_014169835.1) is composed of 4 proteins: Type_I_MTases (WP_182963881.1), Type_I_MTases (WP_182963881.1), Type_I_S (WP_182963883.1)and, Type_I_REases (WP_182963884.1). - +{width=750px} RM_Type_II subsystem in the genome of *Mannheimia haemolytica* (GCF_007965905.1) is composed of 2 proteins: Type_II_MTases (WP_006248352.1)and, Type_II_REases (WP_006253295.1). - +{width=750px} RM_Type_IIG subsystem in the genome of *Spirochaeta africana* (GCF_000242595.2) is composed of 1 protein: Type_IIG (WP_014455422.1). - +{width=750px} RM_Type_III subsystem in the genome of *Pannonibacter phragmitetus* (GCF_001484065.1) is composed of 2 proteins: Type_III_MTases (WP_058898889.1)and, Type_III_REases (WP_058898890.1). - +{width=750px} RM_Type_IV subsystem in the genome of *Clostridioides difficile* (GCF_018884605.1) is composed of 1 protein: Type_IV_REases (WP_021364579.1). @@ -34,7 +34,7 @@ The RM system is present in a total of 4699 different species. Among the 22k complete genomes of RefSeq, this system is present in 19087 genomes (83.7 %). - +{width=750px} *Proportion of genome encoding the RM system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* diff --git a/content/2.defense-systems/rnlab.md b/content/2.defense-systems/rnlab.md index 238b38579b0d395e8e6f000466884ee7d17bdf63..5acd51192d164e2d9c9a5b7cc79222d5bbacfebb 100644 --- a/content/2.defense-systems/rnlab.md +++ b/content/2.defense-systems/rnlab.md @@ -8,7 +8,7 @@ The RnlAB system is composed of 2 proteins: RnlA and, RnlB. Here is an example found in the RefSeq database: - +{width=750px} RnlAB system in the genome of *Escherichia coli* (GCF_014338505.1) is composed of 2 proteins: RnlA (WP_000155570.1)and, RnlB (WP_000461704.1). @@ -18,7 +18,7 @@ The RnlAB system is present in a total of 71 different species. Among the 22k complete genomes of RefSeq, this system is present in 284 genomes (1.2 %). - +{width=750px} *Proportion of genome encoding the RnlAB system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/rosmerta.md b/content/2.defense-systems/rosmerta.md index 2134c7cc217660e2937e06c276448070679db404..7d45881456dd8d93f0022400a12fac478b76dfb6 100644 --- a/content/2.defense-systems/rosmerta.md +++ b/content/2.defense-systems/rosmerta.md @@ -8,7 +8,7 @@ The RosmerTA system is composed of 2 proteins: RmrA_2634932349 and, RmrT_2634932 Here is an example found in the RefSeq database: - +{width=750px} RosmerTA system in the genome of *Acinetobacter indicus* (GCF_002953575.2) is composed of 2 proteins: RmrT_2641389401 (WP_045796188.1)and, RmrA_2641389401 (WP_045796189.1). @@ -18,7 +18,7 @@ The RosmerTA system is present in a total of 540 different species. Among the 22k complete genomes of RefSeq, this system is present in 2124 genomes (9.3 %). - +{width=750px} *Proportion of genome encoding the RosmerTA system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/rst_2tm_1tm_tir.md b/content/2.defense-systems/rst_2tm_1tm_tir.md index 8be9f52b83e781742b8b82c11920fa29c95c3f98..a2cef6c8790419cd6a2836ce05d8f1de1d1fe370 100644 --- a/content/2.defense-systems/rst_2tm_1tm_tir.md +++ b/content/2.defense-systems/rst_2tm_1tm_tir.md @@ -8,7 +8,7 @@ The Rst_2TM_1TM_TIR system is composed of 3 proteins: Rst_TIR_tm, Rst_1TM_TIR an Here is an example found in the RefSeq database: - +{width=750px} Rst_2TM_1TM_TIR system in the genome of *Escherichia coli* (GCF_001900375.1) is composed of 3 proteins: Rst_TIR_tm (WP_023140578.1), Rst_1TM_TIR (WP_001534953.1)and, Rst_2TM_TIR (WP_023140577.1). @@ -18,7 +18,7 @@ The Rst_2TM_1TM_TIR system is present in a total of 1 different species. Among the 22k complete genomes of RefSeq, this system is present in 2 genomes (0.0 %). - +{width=750px} *Proportion of genome encoding the Rst_2TM_1TM_TIR system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/rst_3hp.md b/content/2.defense-systems/rst_3hp.md index 897575c45283d0eac1e4bcd4e1ed5a79c283015e..3152cd59cf68c769fcb1e765944f20865523fd17 100644 --- a/content/2.defense-systems/rst_3hp.md +++ b/content/2.defense-systems/rst_3hp.md @@ -8,7 +8,7 @@ The Rst_3HP system is composed of 3 proteins: Hp1, Hp2 and, Hp3. Here is an example found in the RefSeq database: - +{width=750px} Rst_3HP system in the genome of *Klebsiella pneumoniae* (GCF_016403065.1) is composed of 3 proteins: Hp3 (WP_004151009.1), Hp2 (WP_004151008.1)and, Hp1 (WP_004151007.1). @@ -18,7 +18,7 @@ The Rst_3HP system is present in a total of 83 different species. Among the 22k complete genomes of RefSeq, this system is present in 420 genomes (1.8 %). - +{width=750px} *Proportion of genome encoding the Rst_3HP system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/rst_duf4238.md b/content/2.defense-systems/rst_duf4238.md index 86b917f3e40e4b577f7434129e6260c5e747f79d..0ce53bb26112dc6207579967e36f18bab7713d55 100644 --- a/content/2.defense-systems/rst_duf4238.md +++ b/content/2.defense-systems/rst_duf4238.md @@ -8,7 +8,7 @@ The Rst_DUF4238 system is composed of one protein: DUF4238_Pers. Here is an example found in the RefSeq database: - +{width=750px} Rst_DUF4238 system in the genome of *Enterobacter kobei* (GCF_008365235.1) is composed of 1 protein: DUF4238_Pers (WP_058689834.1). @@ -18,7 +18,7 @@ The Rst_DUF4238 system is present in a total of 34 different species. Among the 22k complete genomes of RefSeq, this system is present in 46 genomes (0.2 %). - +{width=750px} *Proportion of genome encoding the Rst_DUF4238 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/rst_gop_beta_cll.md b/content/2.defense-systems/rst_gop_beta_cll.md index e059ea086e0d7e2cdeae25298e435fec7bb7918c..259d682b7a2147f5cb870cb2702b191baaa5be0a 100644 --- a/content/2.defense-systems/rst_gop_beta_cll.md +++ b/content/2.defense-systems/rst_gop_beta_cll.md @@ -8,7 +8,7 @@ The Rst_gop_beta_cll system is composed of 3 proteins: gop, beta and, cll. Here is an example found in the RefSeq database: - +{width=750px} Rst_gop_beta_cll system in the genome of *Escherichia coli* (GCF_003018615.1) is composed of 3 proteins: cll (WP_001357997.1), beta (WP_001357996.1)and, gop (WP_000931915.1). @@ -18,7 +18,7 @@ The Rst_gop_beta_cll system is present in a total of 14 different species. Among the 22k complete genomes of RefSeq, this system is present in 37 genomes (0.2 %). - +{width=750px} *Proportion of genome encoding the Rst_gop_beta_cll system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/rst_helicaseduf2290.md b/content/2.defense-systems/rst_helicaseduf2290.md index 94ac823082a3bc6712a40f1338a4a8e05a0aff47..17c8062cf95a93f0a27da0c67e7d9f65829d1fc8 100644 --- a/content/2.defense-systems/rst_helicaseduf2290.md +++ b/content/2.defense-systems/rst_helicaseduf2290.md @@ -8,7 +8,7 @@ The Rst_HelicaseDUF2290 system is composed of 2 proteins: Helicase and, DUF2290. Here is an example found in the RefSeq database: - +{width=750px} Rst_HelicaseDUF2290 system in the genome of *Xylella fastidiosa* (GCF_021459885.1) is composed of 2 proteins: Helicase (WP_012338122.1)and, DUF2290 (WP_004084731.1). @@ -18,7 +18,7 @@ The Rst_HelicaseDUF2290 system is present in a total of 124 different species. Among the 22k complete genomes of RefSeq, this system is present in 211 genomes (0.9 %). - +{width=750px} *Proportion of genome encoding the Rst_HelicaseDUF2290 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/rst_hydrolase-3tm.md b/content/2.defense-systems/rst_hydrolase-3tm.md index e72fe3fbaa11a9e3c8b4f9256dabf1cee4162b91..36c4c90b69ec6dfeb9e2bcf1a7c1f9ca31d87458 100644 --- a/content/2.defense-systems/rst_hydrolase-3tm.md +++ b/content/2.defense-systems/rst_hydrolase-3tm.md @@ -8,7 +8,7 @@ The Rst_Hydrolase-3Tm system is composed of 2 proteins: Hydrolase and, Hydrolase Here is an example found in the RefSeq database: - +{width=750px} Rst_Hydrolase-Tm subsystem in the genome of *Escherichia coli* (GCF_004792495.1) is composed of 2 proteins: Hydrolase-Tm (WP_000998640.1)and, Hydrolase (WP_000754434.1). @@ -18,7 +18,7 @@ The Rst_Hydrolase-3Tm system is present in a total of 34 different species. Among the 22k complete genomes of RefSeq, this system is present in 42 genomes (0.2 %). - +{width=750px} *Proportion of genome encoding the Rst_Hydrolase-3Tm system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/rst_paris.md b/content/2.defense-systems/rst_paris.md index cd73c384ba4c1c657e5ac5d41feb84ce0786fa9c..61050aebeb0ef100df5b06ba02d640a7135faa13 100644 --- a/content/2.defense-systems/rst_paris.md +++ b/content/2.defense-systems/rst_paris.md @@ -14,19 +14,19 @@ The Rst_PARIS system have been describe in a total of 4 subsystems. Here is some example found in the RefSeq database: - +{width=750px} PARIS_I subsystem in the genome of *Salmonella enterica* (GCF_020715485.1) is composed of 2 proteins: AAA_15 (WP_001520831.1)and, DUF4435 (WP_010989064.1). - +{width=750px} PARIS_II subsystem in the genome of *Enterobacter cloacae* (GCF_023238665.1) is composed of 2 proteins: DUF4435 (WP_071830092.1)and, AAA_21 (WP_061772587.1). - +{width=750px} PARIS_II_merge subsystem in the genome of *Desulfovibrio desulfuricans* (GCF_017815575.1) is composed of 1 protein: AAA_21_DUF4435 (WP_209818471.1). - +{width=750px} PARIS_I_merge subsystem in the genome of *Sideroxydans lithotrophicus* (GCF_000025705.1) is composed of 1 protein: AAA_15_DUF4435 (WP_013030315.1). @@ -36,7 +36,7 @@ The Rst_PARIS system is present in a total of 463 different species. Among the 22k complete genomes of RefSeq, this system is present in 1145 genomes (5.0 %). - +{width=750px} *Proportion of genome encoding the Rst_PARIS system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* diff --git a/content/2.defense-systems/rst_rt-nitrilase-tm.md b/content/2.defense-systems/rst_rt-nitrilase-tm.md index 03064e647cbd99d6ca619e5be12b3ede52ac58a4..8441e5333d3f5b78dce1a0b13d15ccafec28491d 100644 --- a/content/2.defense-systems/rst_rt-nitrilase-tm.md +++ b/content/2.defense-systems/rst_rt-nitrilase-tm.md @@ -8,7 +8,7 @@ The Rst_RT-nitrilase-Tm system is composed of 2 proteins: RT-Tm and, RT. Here is an example found in the RefSeq database: - +{width=750px} Rst_RT-Tm subsystem in the genome of *Morganella morganii* (GCF_900478755.1) is composed of 2 proteins: RT (WP_061057569.1)and, RT-Tm (WP_004234654.1). @@ -18,7 +18,7 @@ The Rst_RT-nitrilase-Tm system is present in a total of 5 different species. Among the 22k complete genomes of RefSeq, this system is present in 25 genomes (0.1 %). - +{width=750px} *Proportion of genome encoding the Rst_RT-nitrilase-Tm system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/rst_tir-nlr.md b/content/2.defense-systems/rst_tir-nlr.md index 5b7803b7eec7a8cbd6e7db88a99d52e8576ba92b..e79b67a4faf5b9b4e5cfa7ed3532767dd8ad7eb2 100644 --- a/content/2.defense-systems/rst_tir-nlr.md +++ b/content/2.defense-systems/rst_tir-nlr.md @@ -8,7 +8,7 @@ The Rst_TIR-NLR system is composed of one protein: TIR. Here is an example found in the RefSeq database: - +{width=750px} Rst_TIR-NLR system in the genome of *Escherichia coli* (GCF_016903595.1) is composed of 1 protein: TIR (WP_059327187.1). @@ -18,7 +18,7 @@ The Rst_TIR-NLR system is present in a total of 43 different species. Among the 22k complete genomes of RefSeq, this system is present in 254 genomes (1.1 %). - +{width=750px} *Proportion of genome encoding the Rst_TIR-NLR system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/sanata.md b/content/2.defense-systems/sanata.md index d731813d0b8533e973be40b8daa0795997009753..5df3eef8bf0fe0a1f44871293f09a120757710c6 100644 --- a/content/2.defense-systems/sanata.md +++ b/content/2.defense-systems/sanata.md @@ -8,7 +8,7 @@ The SanaTA system is composed of 2 proteins: SanaT and, SanaA. Here is an example found in the RefSeq database: - +{width=750px} SanaTA system in the genome of *Methylovorus glucosetrophus* (GCF_000023745.1) is composed of 2 proteins: SanaT (WP_015830669.1)and, SanaA (WP_015830670.1). @@ -18,7 +18,7 @@ The SanaTA system is present in a total of 504 different species. Among the 22k complete genomes of RefSeq, this system is present in 1071 genomes (4.7 %). - +{width=750px} *Proportion of genome encoding the SanaTA system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/sefir.md b/content/2.defense-systems/sefir.md index 2fd76b032242cf3252de99490ab4700c800776f9..95996bc14f40618548f8f3734d796d07d919ab7b 100644 --- a/content/2.defense-systems/sefir.md +++ b/content/2.defense-systems/sefir.md @@ -16,7 +16,7 @@ The SEFIR system is composed of one protein: bSEFIR. Here is an example found in the RefSeq database: - +{width=750px} SEFIR system in the genome of *Lactiplantibacillus plantarum* (GCF_003020005.1) is composed of 1 protein: bSEFIR (WP_106904862.1). @@ -26,7 +26,7 @@ The SEFIR system is present in a total of 226 different species. Among the 22k complete genomes of RefSeq, this system is present in 377 genomes (1.7 %). - +{width=750px} *Proportion of genome encoding the SEFIR system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/septu.md b/content/2.defense-systems/septu.md index 8db0fc3f6eea39ceccb29ddde8fdb5b837d011a3..2f893f1d200b33ec418b83eeafa25e805ec881ba 100644 --- a/content/2.defense-systems/septu.md +++ b/content/2.defense-systems/septu.md @@ -8,7 +8,7 @@ The Septu system is composed of 2 proteins: PtuA and, PtuB. Here is an example found in the RefSeq database: - +{width=750px} Septu system in the genome of *Arcobacter porcinus* (GCF_004299785.2) is composed of 2 proteins: PtuA (WP_066386194.1)and, PtuB_2 (WP_066386193.1). @@ -18,7 +18,7 @@ The Septu system is present in a total of 911 different species. Among the 22k complete genomes of RefSeq, this system is present in 2193 genomes (9.6 %). - +{width=750px} *Proportion of genome encoding the Septu system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/shango.md b/content/2.defense-systems/shango.md index ee02533b4c7d896ec4818cc02b208d7807a93041..dd60129d147df35fecaf68ab04ae5a04e64af33c 100644 --- a/content/2.defense-systems/shango.md +++ b/content/2.defense-systems/shango.md @@ -19,7 +19,7 @@ The Shango system is composed of 3 proteins: SngC, SngB and, SngA. Here is an example found in the RefSeq database: - +{width=750px} Shango system in the genome of *Paenibacillus sp.* (GCF_022637315.1) is composed of 3 proteins: SngA (WP_241931534.1), SngB (WP_241931535.1)and, SngC (WP_241931536.1). @@ -29,7 +29,7 @@ The Shango system is present in a total of 385 different species. Among the 22k complete genomes of RefSeq, this system is present in 1112 genomes (4.9 %). - +{width=750px} *Proportion of genome encoding the Shango system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/shedu.md b/content/2.defense-systems/shedu.md index 2ca934f66d7d06ea936159140d21ad03531ee423..6fd3761a67d015102e8a1f3c0912055aafacd6eb 100644 --- a/content/2.defense-systems/shedu.md +++ b/content/2.defense-systems/shedu.md @@ -8,7 +8,7 @@ The Shedu system is composed of one protein: SduA. Here is an example found in the RefSeq database: - +{width=750px} Shedu system in the genome of *Mycolicibacterium psychrotolerans* (GCF_010729305.1) is composed of 1 protein: SduA (WP_246228780.1). @@ -18,7 +18,7 @@ The Shedu system is present in a total of 483 different species. Among the 22k complete genomes of RefSeq, this system is present in 899 genomes (3.9 %). - +{width=750px} *Proportion of genome encoding the Shedu system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/shosta.md b/content/2.defense-systems/shosta.md index f181c7513045ce298f9b5954787dd4ba3ee4fcdc..96c7162ca6361d0a9626f99c1b8b3467d54c643d 100644 --- a/content/2.defense-systems/shosta.md +++ b/content/2.defense-systems/shosta.md @@ -8,7 +8,7 @@ The ShosTA system is composed of 2 proteins: ShosA and, ShosT. Here is an example found in the RefSeq database: - +{width=750px} ShosTA system in the genome of *Escherichia coli* (GCF_011404895.1) is composed of 2 proteins: ShosA (WP_001567470.1)and, ShosT (WP_001567471.1). @@ -18,7 +18,7 @@ The ShosTA system is present in a total of 299 different species. Among the 22k complete genomes of RefSeq, this system is present in 668 genomes (2.9 %). - +{width=750px} *Proportion of genome encoding the ShosTA system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/sofic.md b/content/2.defense-systems/sofic.md index c62aa5a9d8fbadfa349f740fb44a4a7a8706eb02..c1ffce4ac095b705e92f5eb69820b1bc1e374299 100644 --- a/content/2.defense-systems/sofic.md +++ b/content/2.defense-systems/sofic.md @@ -8,7 +8,7 @@ The SoFIC system is composed of one protein: SoFic. Here is an example found in the RefSeq database: - +{width=750px} SoFic subsystem in the genome of *Fusobacterium nucleatum* (GCF_019552125.1) is composed of 1 protein: SoFic (WP_220308819.1). @@ -18,7 +18,7 @@ The SoFIC system is present in a total of 1014 different species. Among the 22k complete genomes of RefSeq, this system is present in 2265 genomes (9.9 %). - +{width=750px} *Proportion of genome encoding the SoFIC system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/spbk.md b/content/2.defense-systems/spbk.md index de597b7c19c0ecd5271f4a8d266507cd68fd0133..947d59ccd400e3627cf5ac53fdc12b10b922c82d 100644 --- a/content/2.defense-systems/spbk.md +++ b/content/2.defense-systems/spbk.md @@ -8,7 +8,7 @@ The SpbK system is composed of one protein: SpbK. Here is an example found in the RefSeq database: - +{width=750px} SpbK system in the genome of *Clostridium beijerinckii* (GCF_900010805.1) is composed of 1 protein: SpbK (WP_077841417.1). @@ -18,7 +18,7 @@ The SpbK system is present in a total of 88 different species. Among the 22k complete genomes of RefSeq, this system is present in 219 genomes (1.0 %). - +{width=750px} *Proportion of genome encoding the SpbK system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/sspbcde.md b/content/2.defense-systems/sspbcde.md index a35012338b3f73bf18192fec8a95194ebb448088..54e155772c321f10b222f1ecafc6f3bd2abbc170 100644 --- a/content/2.defense-systems/sspbcde.md +++ b/content/2.defense-systems/sspbcde.md @@ -8,7 +8,7 @@ The SspBCDE system is composed of 7 proteins: SspB, SspC, SspD, SspE, SspH, SspG Here is an example found in the RefSeq database: - +{width=750px} SspBCDE system in the genome of *Bordetella hinzii* (GCF_006770405.1) is composed of 7 proteins: SspF (WP_221886990.1), SspG (WP_142096192.1), SspH (WP_142096195.1), SspE (WP_142096198.1), SspD (WP_142096201.1), SspC (WP_142096204.1)and, SspB (WP_142096207.1). @@ -18,7 +18,7 @@ The SspBCDE system is present in a total of 276 different species. Among the 22k complete genomes of RefSeq, this system is present in 579 genomes (2.5 %). - +{width=750px} *Proportion of genome encoding the SspBCDE system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/stk2.md b/content/2.defense-systems/stk2.md index 6b3d9095f710d0e3f66facaa518cc64142dbbd3f..cc176e5b552066b2a5228c0c3aee474d7ebb4b4d 100644 --- a/content/2.defense-systems/stk2.md +++ b/content/2.defense-systems/stk2.md @@ -17,7 +17,7 @@ The Stk2 system is composed of one protein: Stk2. Here is an example found in the RefSeq database: - +{width=750px} Stk2 system in the genome of *Staphylococcus aureus* (GCF_009739755.1) is composed of 1 protein: Stk2 (WP_001001347.1). @@ -27,7 +27,7 @@ The Stk2 system is present in a total of 29 different species. Among the 22k complete genomes of RefSeq, this system is present in 141 genomes (0.6 %). - +{width=750px} *Proportion of genome encoding the Stk2 system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/thoeris.md b/content/2.defense-systems/thoeris.md index 8c175628308e7cac052873249be0638eec163620..f6c9b0a388acb37036e15cc3cc3c30e1996fe028 100644 --- a/content/2.defense-systems/thoeris.md +++ b/content/2.defense-systems/thoeris.md @@ -8,11 +8,11 @@ The Thoeris system have been describe in a total of 2 subsystems. Here is some example found in the RefSeq database: - +{width=750px} Thoeris_I subsystem in the genome of *Bacillus thuringiensis* (GCF_020809205.1) is composed of 2 proteins: ThsA_new_grand (WP_021728720.1)and, ThsB_Global (WP_021728719.1). - +{width=750px} Thoeris_II subsystem in the genome of *Acinetobacter baumannii* (GCF_014672775.1) is composed of 2 proteins: ThsB_Global (WP_000120680.1)and, ThsA_new_petit (WP_005134880.1). @@ -22,7 +22,7 @@ The Thoeris system is present in a total of 286 different species. Among the 22k complete genomes of RefSeq, this system is present in 812 genomes (3.6 %). - +{width=750px} *Proportion of genome encoding the Thoeris system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* diff --git a/content/2.defense-systems/tiamat.md b/content/2.defense-systems/tiamat.md index e6ce8b757a9a7a42b141b4cb6ecd41ee054e0b21..bc356f4d87638cd5c75e5d0c6bb64bffd9f9d6c3 100644 --- a/content/2.defense-systems/tiamat.md +++ b/content/2.defense-systems/tiamat.md @@ -8,7 +8,7 @@ The Tiamat system is composed of one protein: TmtA_2599863134. Here is an example found in the RefSeq database: - +{width=750px} Tiamat system in the genome of *Pseudomonas aeruginosa* (GCF_022638055.1) is composed of 1 protein: TmtA_2731770353 (WP_023121076.1). @@ -18,7 +18,7 @@ The Tiamat system is present in a total of 228 different species. Among the 22k complete genomes of RefSeq, this system is present in 342 genomes (1.5 %). - +{width=750px} *Proportion of genome encoding the Tiamat system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/uzume.md b/content/2.defense-systems/uzume.md index bb70cb9c9ca983a9e1c038efe0c91da94b282a1a..afe27d1b81af6bc7d8f51da969b9dbf847d00bb2 100644 --- a/content/2.defense-systems/uzume.md +++ b/content/2.defense-systems/uzume.md @@ -8,7 +8,7 @@ The Uzume system is composed of one protein: UzuA_2660320622. Here is an example found in the RefSeq database: - +{width=750px} Uzume system in the genome of *Nocardioides euryhalodurans* (GCF_004564375.1) is composed of 1 protein: UzuA (WP_135074908.1). @@ -18,7 +18,7 @@ The Uzume system is present in a total of 76 different species. Among the 22k complete genomes of RefSeq, this system is present in 125 genomes (0.5 %). - +{width=750px} *Proportion of genome encoding the Uzume system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/viperin.md b/content/2.defense-systems/viperin.md index 3f760a93b21741272a7a22c0a3f5bd57939cca13..c914c9bb121981ca73c5ebf1cda81d6cc98397f4 100644 --- a/content/2.defense-systems/viperin.md +++ b/content/2.defense-systems/viperin.md @@ -25,7 +25,7 @@ The Viperin system is composed of one protein: pVip. Here is an example found in the RefSeq database: - +{width=750px} Viperin system in the genome of *Moritella yayanosii* is composed of 1 protein: pVip (WP_112711942.1). @@ -35,7 +35,7 @@ The Viperin system is present in a total of 85 different species. Among the 22k complete genomes of RefSeq, this system is present in 118 genomes (0.5 %). - +{width=750px} *Proportion of genome encoding the Viperin system for the 14 phyla with more than 50 genomes in the RefSeq database.* diff --git a/content/2.defense-systems/wadjet.md b/content/2.defense-systems/wadjet.md index bae527b40ddb4882fff2ff8f4adf3a17ebbb1076..d9859c1b41f2ef2f3d91883dddfd850b78819070 100644 --- a/content/2.defense-systems/wadjet.md +++ b/content/2.defense-systems/wadjet.md @@ -8,15 +8,15 @@ The Wadjet system have been describe in a total of 4 subsystems. Here is some example found in the RefSeq database: - +{width=750px} Wadjet_I subsystem in the genome of *Bifidobacterium pseudocatenulatum* (GCF_021484885.1) is composed of 4 proteins: JetA_I (WP_195524168.1), JetB_I (WP_195523897.1), JetC_I (WP_195523898.1)and, JetD_I (WP_229067172.1). - +{width=750px} Wadjet_II subsystem in the genome of *Streptomyces sp.* (GCF_023273835.1) is composed of 4 proteins: JetD_II (WP_248777007.1), JetC_II (WP_248777008.1), JetB_II (WP_248777009.1)and, JetA_II (WP_248777010.1). - +{width=750px} Wadjet_III subsystem in the genome of *Caldibacillus thermoamylovorans* (GCF_003096215.1) is composed of 4 proteins: JetD_III (WP_108897743.1), JetA_III (WP_108897744.1), JetB_III (WP_034768879.1)and, JetC_III (WP_108897745.1). @@ -26,7 +26,7 @@ The Wadjet system is present in a total of 1151 different species. Among the 22k complete genomes of RefSeq, this system is present in 2380 genomes (10.4 %). - +{width=750px} *Proportion of genome encoding the Wadjet system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* diff --git a/content/2.defense-systems/zorya.md b/content/2.defense-systems/zorya.md index d969dffb1c3e103e7f373e687ea1c11b670f39bd..53ff75ce0059911020738ce7f8fdaf9ef8944da5 100644 --- a/content/2.defense-systems/zorya.md +++ b/content/2.defense-systems/zorya.md @@ -8,11 +8,11 @@ The Zorya system have been describe in a total of 2 subsystems. Here is some example found in the RefSeq database: - +{width=750px} Zorya_TypeI subsystem in the genome of *Pseudomonas aeruginosa* (GCF_002085605.1) is composed of 4 proteins: ZorD (WP_015649020.1), ZorC (WP_015649021.1), ZorB (WP_015649022.1)and, ZorA (WP_025297974.1). - +{width=750px} Zorya_TypeII subsystem in the genome of *Legionella longbeachae* (GCF_011465255.1) is composed of 3 proteins: ZorA2 (WP_050777601.1), ZorB (WP_003632756.1)and, ZorE (WP_050777600.1). @@ -22,7 +22,7 @@ The Zorya system is present in a total of 304 different species. Among the 22k complete genomes of RefSeq, this system is present in 840 genomes (3.7 %). - +{width=750px} *Proportion of genome encoding the Zorya system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*