diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 9e849debee2c90fd980da165bcb5318b9edd9bb4..e82aaa38465a462bc81207aa7533882b5b0d3f51 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -441,8 +441,8 @@ load-website:prod:
- kubectl --namespace ${NAMESPACE} cp .output/public/ ${WIKI_POD}:/website
- kubectl --namespace ${NAMESPACE} cp scripts/copy-structure-data.sh ${WIKI_POD}:/structure-data/sanitized-dump
- - kubectl --namespace ${NAMESPACE} exec ${WIKI_POD} -- bash /structure-data/sanitized-dump/copy-structure-data.sh
- - kubectl --namespace ${NAMESPACE} exec ${WIKI_POD} -- bash -c 'cd /structure-data/sanitized-dump && find * -type d -exec sh -c "for d in $@; do (cd /usr/share/nginx/html/$d; cp --archive --recursive --symbolic-link /structure-data/sanitized-dump/$d/* .) done" argv0 {} +'
+ - kubectl --namespace ${NAMESPACE} exec ${WIKI_POD} -- bash -c 'cd /structure-data/sanitized-dump && bash copy-structure-data.sh'
+ # - kubectl --namespace ${NAMESPACE} exec ${WIKI_POD} -- bash -c 'cd /structure-data/sanitized-dump && find * -type d -exec sh -c "for d in $@; do (cd /usr/share/nginx/html/$d; cp --archive --recursive --symbolic-link /structure-data/sanitized-dump/$d/* .) done" argv0 {} +'
diff --git a/components/content/MolstarPdbePlugin.vue b/components/content/MolstarPdbePlugin.vue
index 3658274f9c7bcd2f81a241bb5927f455809c8974..79716b0788a78c6ad0b626310a6f8f720f7a8381 100644
--- a/components/content/MolstarPdbePlugin.vue
+++ b/components/content/MolstarPdbePlugin.vue
@@ -157,102 +157,103 @@ const moleculeFormat: Ref<string> = ref("pdb")
<template>
- <span class="d-flex flex-wrap align-center justify-center">
+ <template v-if="uniq">
<v-row>
- <template v-if="uniq">
- <v-btn size="x-small" variant="tonal" icon="md:visibility" @click="setSelectedPdbToFirst()"></v-btn>
- <v-btn :disabled="!structureToDownload" size="x-small" variant="tonal" icon="md:download" class="ml-1"
- :href="structureToDownload"></v-btn>
- </template>
- <v-select v-else v-model="selectedPdb" label="Select PDB" :items="refinedDataUrls" hide-details="auto">
- </v-select>
+ <v-btn size="x-small" variant="tonal" icon="md:visibility" @click="setSelectedPdbToFirst()"></v-btn>
+ <v-btn :disabled="!structureToDownload" size="x-small" variant="tonal" icon="md:download" class="ml-1"
+ :href="structureToDownload"></v-btn>
</v-row>
- <v-dialog v-model="dialog" transition="dialog-bottom-transition" fullscreen :scrim="false">
- <v-card flat :rounded="false">
- <v-toolbar>
- <v-toolbar-title>Structures</v-toolbar-title>
- <v-select v-model="selectedPdb" label="Select PDB" :items="refinedDataUrls"
- hide-details="auto"></v-select>
- <v-spacer></v-spacer>
-
- <v-btn :disabled="!selectedPdb" icon="md:download" :href="structureToDownload"></v-btn>
- <v-btn icon @click="closeStructure">
- <v-icon>mdi-close</v-icon>
- </v-btn>
-
- </v-toolbar>
- <v-card-text>
- <v-row>
- <v-col :cols="mobile ? 12 : 'auto'">
- <v-sheet v-if="selectedPdb"
- class="d-flex align-center justify-center flex-wrap text-center mx-auto px-4 my-3"
- :height="computedHeight" :width="computedWidth" position="relative">
- <pdbe-molstar ref="pdbeMolstarComponent" hide-controls="true" landscape="true"
- :custom-data-url="selectedPdb" alphafold-view="true"
- :custom-data-format="moleculeFormat"></pdbe-molstar>
- </v-sheet>
- </v-col>
- <v-col :cols="mobile ? 12 : undefined">
- <v-img :src="selectedPaePath"></v-img>
-
- <!-- <PlotFigure v-if="sanitizedPaeData?.length > 0 && paeError === null" defer
+ </template>
+ <v-row v-else>
+ <span class="d-flex flex-wrap align-center justify-center">
+ <v-select v-model="selectedPdb" label="Select PDB" :items="refinedDataUrls" hide-details="auto">
+ </v-select>
+ </span>
+ </v-row>
+ <v-dialog v-model="dialog" transition="dialog-bottom-transition" fullscreen :scrim="false">
+ <v-card flat :rounded="false">
+ <v-toolbar>
+ <v-toolbar-title>Structures</v-toolbar-title>
+ <v-select v-model="selectedPdb" label="Select PDB" :items="refinedDataUrls" hide-details="auto"></v-select>
+ <v-spacer></v-spacer>
+
+ <v-btn :disabled="!selectedPdb" icon="md:download" :href="structureToDownload"></v-btn>
+ <v-btn icon @click="closeStructure">
+ <v-icon>mdi-close</v-icon>
+ </v-btn>
+
+ </v-toolbar>
+ <v-card-text>
+ <v-row>
+ <v-col :cols="mobile ? 12 : 'auto'">
+ <v-sheet v-if="selectedPdb"
+ class="d-flex align-center justify-center flex-wrap text-center mx-auto px-4 my-3"
+ :height="computedHeight" :width="computedWidth" position="relative">
+ <pdbe-molstar ref="pdbeMolstarComponent" hide-controls="true" landscape="true"
+ :custom-data-url="selectedPdb" alphafold-view="true"
+ :custom-data-format="moleculeFormat"></pdbe-molstar>
+ </v-sheet>
+ </v-col>
+ <v-col :cols="mobile ? 12 : undefined">
+ <v-img :src="selectedPaePath"></v-img>
+
+ <!-- <PlotFigure v-if="sanitizedPaeData?.length > 0 && paeError === null" defer
:options="plotPaeOptions"></PlotFigure>
<v-alert v-else type="warning" variant="tonal">{{ paeError }}</v-alert> -->
- <v-card flat color="transparent">
- <v-card-title>Model Confidence</v-card-title>
- <v-card-text>
- AlphaFold produces a per-residue model
- confidence score (pLDDT) between 0 and 100. Some regions below 50 pLDDT may be
- unstructured
- in isolation.
- </v-card-text>
- <v-list>
- <v-list-item>
- <template #prepend>
- <div class="legendColor mr-2" style="background-color: rgb(0, 83, 214);">
- </div>
- </template>
- <v-list-item-title>
- Very high (pLDDT > 90)
- </v-list-item-title>
-
- </v-list-item>
- <v-list-item>
- <template #prepend>
- <div class="legendColor mr-2" style="background-color: rgb(101, 203, 243);">
- </div>
- </template>
- <v-list-item-title>
- High (90 > pLDDT > 70)
- </v-list-item-title>
-
- </v-list-item>
- <v-list-item>
- <template #prepend>
- <div class="legendColor mr-2" style="background-color: rgb(255, 219, 19);">
- </div>
- </template>
- <v-list-item-title>
- Low (70 > pLDDT > 50) </v-list-item-title>
-
- </v-list-item>
- <v-list-item>
- <template #prepend>
- <div class="legendColor mr-2" style="background-color: rgb(255, 125, 69);">
- </div>
- </template>
- <v-list-item-title>
- Very low (pLDDT < 50) </v-list-item-title>
-
- </v-list-item>
- </v-list>
- </v-card>
- </v-col>
- </v-row>
- </v-card-text>
- </v-card>
- </v-dialog>
- </span>
+ <v-card flat color="transparent">
+ <v-card-title>Model Confidence</v-card-title>
+ <v-card-text>
+ AlphaFold produces a per-residue model
+ confidence score (pLDDT) between 0 and 100. Some regions below 50 pLDDT may be
+ unstructured
+ in isolation.
+ </v-card-text>
+ <v-list>
+ <v-list-item>
+ <template #prepend>
+ <div class="legendColor mr-2" style="background-color: rgb(0, 83, 214);">
+ </div>
+ </template>
+ <v-list-item-title>
+ Very high (pLDDT > 90)
+ </v-list-item-title>
+
+ </v-list-item>
+ <v-list-item>
+ <template #prepend>
+ <div class="legendColor mr-2" style="background-color: rgb(101, 203, 243);">
+ </div>
+ </template>
+ <v-list-item-title>
+ High (90 > pLDDT > 70)
+ </v-list-item-title>
+
+ </v-list-item>
+ <v-list-item>
+ <template #prepend>
+ <div class="legendColor mr-2" style="background-color: rgb(255, 219, 19);">
+ </div>
+ </template>
+ <v-list-item-title>
+ Low (70 > pLDDT > 50) </v-list-item-title>
+
+ </v-list-item>
+ <v-list-item>
+ <template #prepend>
+ <div class="legendColor mr-2" style="background-color: rgb(255, 125, 69);">
+ </div>
+ </template>
+ <v-list-item-title>
+ Very low (pLDDT < 50) </v-list-item-title>
+
+ </v-list-item>
+ </v-list>
+ </v-card>
+ </v-col>
+ </v-row>
+ </v-card-text>
+ </v-card>
+ </v-dialog>
</template>
diff --git a/components/content/StructureDb.vue b/components/content/StructureDb.vue
index f608ee9948406969fe46b4c25a64a238b8c57065..8136ee88763b36b569dd63294ffab08d64318c98 100644
--- a/components/content/StructureDb.vue
+++ b/components/content/StructureDb.vue
@@ -140,9 +140,9 @@ const plddtDistribution = computed(() => {
<MolstarPdbePlugin v-if="item?.pdb && item.pdb !== 'na'"
:data-urls="[`/${toSystemName(item.system)}/${pdbNameToCif(item.pdb)}`]" uniq>
</MolstarPdbePlugin>
- <span v-else class="d-flex flex-wrap align-center justify-center">
- <v-icon color="warning" icon="md:dangerous"></v-icon>
- </span>
+
+ <!-- <v-icon v-else color="warning" icon="md:dangerous"></v-icon> -->
+
</template>
<template #[`item.completed`]="{ item }">
<v-icon v-if="item.completed" color="success" icon="md:check"></v-icon>