From 0f67cf0353bfbe1a3124639f87393dd6f605d4d0 Mon Sep 17 00:00:00 2001
From: Remi PLANEL <rplanel@pasteur.fr>
Date: Thu, 11 May 2023 10:21:35 +0200
Subject: [PATCH] update reference list to work with vuetify
---
components/content/ReferencesList.vue | 41 ++++++++++++++++-----------
content/2.defense-systems/1.PARIS.md | 19 +++++--------
content/2.defense-systems/2.AbiE.md | 7 ++---
content/2.defense-systems/3.AVAST.md | 8 ++++--
4 files changed, 40 insertions(+), 35 deletions(-)
diff --git a/components/content/ReferencesList.vue b/components/content/ReferencesList.vue
index 5ab93feb..825e7853 100644
--- a/components/content/ReferencesList.vue
+++ b/components/content/ReferencesList.vue
@@ -1,19 +1,21 @@
<template>
<ClientOnly fallback-tag="span" fallback="Loading references...">
- <ProseOl v-if="computedItems.length > 0">
- <ProseA
- v-for="item in computedItems"
- :key="item.DOI"
- :href="item.href"
- target="blank"
- >
- <ProseLi class="refArticle">
- <div class="ref-title">{{ item.title }}.</div>
- <div class="ref-authors">{{ item.authorsString }}</div>
- <div>{{ item?.containerTitle }}</div>
- </ProseLi>
- </ProseA>
- </ProseOl>
+ <v-list
+ v-if="computedItems.length > 0"
+ :items="computedItems"
+ item-props
+ lines="three"
+ >
+ <template #subtitle="{ item }">
+ <div>{{ item.subtitle }}</div>
+ <div>{{ item.containerTitle }} ({{ item.year }})</div>
+ </template>
+ <template #prepend="{ item }">
+ <v-avatar>
+ <v-icon>{{ item.prependIcon }}</v-icon>
+ </v-avatar>
+ </template>
+ </v-list>
</ClientOnly>
</template>
@@ -38,6 +40,9 @@ const fetchedDoi = ref(
"container-title-short": string;
"container-title": string;
abstract: string;
+ published: {
+ "date-parts": string[];
+ };
};
}>(url)
.get()
@@ -47,7 +52,7 @@ const fetchedDoi = ref(
)
);
const computedItems = computed(() => {
- return fetchedDoi.value.map((doi) => {
+ return fetchedDoi.value.map((doi, i) => {
if (doi) {
const {
DOI,
@@ -55,15 +60,19 @@ const computedItems = computed(() => {
"container-title-short": cts,
"container-title": ct,
abstract,
+ published,
...rest
} = doi.message;
return {
DOI,
title: title[0],
- authorsString: toAuthorsString(doi?.message?.author ?? []),
+ subtitle: toAuthorsString(doi?.message?.author ?? []),
containerTitle: cts?.length > 0 ? cts[0] : ct?.length > 0 ? ct[0] : "",
abstract,
+ year: published["date-parts"][0][0],
href: getReferenceUrl(DOI),
+ target: "_blank",
+ prependIcon: "mdi-newspaper-variant-outline",
};
} else {
return {};
diff --git a/content/2.defense-systems/1.PARIS.md b/content/2.defense-systems/1.PARIS.md
index 915effc0..ec087763 100644
--- a/content/2.defense-systems/1.PARIS.md
+++ b/content/2.defense-systems/1.PARIS.md
@@ -50,16 +50,11 @@ Paris type II merge system in _Desulfovibrio desulfuricans_ (GCF\__000025705.1).
## ReferencesÂ
-1. François Rousset, Julien Dowding, Aude Bernheim, Eduardo P.C. Rocha, David Bikard, Prophage-encoded hotspots of bacterial immune systems, bioRxiv 2021.01.21.427644; doi: https://doi.org/10.1101/2021.01.21.427644
-
-2. Isaev A, Drobiazko A, Sierro N, et al. Phage T7 DNA mimic protein Ocr is a potent inhibitor of BREX defence \[published correction appears in Nucleic Acids Res. 2020 Jul 27;48(13):7601-7602\]. _Nucleic Acids Res_. 2020;48(10):5397-5406. doi:10.1093/nar/gkaa290
-
-3. Studier FW. Gene 0.3 of bacteriophage T7 acts to overcome the DNA restriction system of the host. J Mol Biol. 1975 May 15;94(2):283-95. doi: 10.1016/0022-2836(75)90083-2. PMID: 1095770.
-
-<!-- ## ::references-list
-
-items: - 10.1101/2021.01.21.427644 - 10.1093/nar/gkaa290 - 10.1016/0022-2836(75)90083-2
-
+::references-list
---
-
-:: -->
+items:
+ - 10.1101/2021.01.21.427644
+ - 10.1093/nar/gkaa290
+ - 10.1016/0022-2836(75)90083-2
+---
+::
diff --git a/content/2.defense-systems/2.AbiE.md b/content/2.defense-systems/2.AbiE.md
index 82e56fe9..1d7331fa 100644
--- a/content/2.defense-systems/2.AbiE.md
+++ b/content/2.defense-systems/2.AbiE.md
@@ -58,13 +58,10 @@ Bacteriophage defences are divided into innate and adaptive systems. Serratia sp
## Sources
-1. Garvey P, Fitzgerald GF, Hill C. Cloning and DNA sequence analysis of two abortive infection phage resistance determinants from the lactococcal plasmid pNP40. Appl Environ Microbiol. 1995 Dec;61(12):4321-8. doi: 10.1128/aem.61.12.4321-4328.1995. PMID: 8534099; PMCID: PMC167743.
-2. Dy RL, Przybilski R, Semeijn K, Salmond GP, Fineran PC. A widespread bacteriophage abortive infection system functions through a Type IV toxin-antitoxin mechanism. Nucleic Acids Res. 2014;42(7):4590-4605. doi:10.1093/nar/gkt1419
-
::references-list
---
-items:
- - 10.1093/nar/gkt1419
+items:
+ - 10.1093/nar/gkt1419
- 10.1128/aem.61.12.4321-4328.1995
---
::
diff --git a/content/2.defense-systems/3.AVAST.md b/content/2.defense-systems/3.AVAST.md
index 31a9ceb2..3834f923 100644
--- a/content/2.defense-systems/3.AVAST.md
+++ b/content/2.defense-systems/3.AVAST.md
@@ -18,5 +18,9 @@ Bacteria and archaea are frequently attacked by viruses and other mobile genetic
## References
-**1\.** Gao L, Altae-Tran H, Böhning F, et al. Diverse enzymatic activities mediate antiviral immunity in prokaryotes. Science. 2020;369(6507):1077-1084. doi:10.1126/science.aba0372
-
+::references-list
+---
+items:
+ - 10.1126/science.aba0372
+---
+::
\ No newline at end of file
--
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