diff --git a/components/content/RefseqDb.vue b/components/content/RefseqDb.vue
index 69772751d0c661e824cf4ad7f0e4d459d09ba54c..96fa269b743cf002aa7b248af673dd7d3bb64bac 100644
--- a/components/content/RefseqDb.vue
+++ b/components/content/RefseqDb.vue
@@ -172,7 +172,8 @@ function namesToAccessionChips(names: string[]) {
         return { ...it, href: new URL(it.title, "http://toto.pasteur.cloud").toString() }
     })
 }
-
+const taxoPanel: Ref<number> = ref(0)
+const systemPanel: Ref<number> = ref(0)
 
 
 </script>
@@ -192,7 +193,7 @@ function namesToAccessionChips(names: string[]) {
             <v-col :cols="fullWidth ? 12 : 6">
 
                 <v-card color="transparent" flat>
-                    <v-expansion-panels>
+                    <v-expansion-panels v-model="systemPanel">
                         <v-expansion-panel elevation="3">
                             <v-expansion-panel-title color="grey-lighten-4">Systems</v-expansion-panel-title>
                             <v-expansion-panel-text>
@@ -204,14 +205,17 @@ function namesToAccessionChips(names: string[]) {
             </v-col>
             <v-col :cols="fullWidth ? 12 : 6">
                 <v-card flat color="transparent">
-                    <v-expansion-panels>
-                        <v-expansion-panel elevation="3">
+                    <v-expansion-panels v-model="taxoPanel">
+                        <v-expansion-panel elevation="3" :value="true">
                             <v-expansion-panel-title color="grey-lighten-4">
                                 Taxonomic
 
 
                             </v-expansion-panel-title>
                             <v-expansion-panel-text>
+                                <v-select v-model="selectedTaxoRank" :items="availableTaxo" density="compact"
+                                    label="Select taxonomic rank"></v-select>
+
 
                                 <PlotFigure defer :options="unref(computedDistriTaxoOptions)"></PlotFigure>
 
diff --git a/components/content/StructureDb.vue b/components/content/StructureDb.vue
index bf0ba15a59dc00c1b2754470356d807727b5acd1..4ec3d385a56b5e24395748036eacc6ffa8fd609c 100644
--- a/components/content/StructureDb.vue
+++ b/components/content/StructureDb.vue
@@ -3,18 +3,17 @@ import type { SortItem } from "@/components/ServerDbTable.vue"
 import { ServerDbTable } from "#components"
 const sortBy: Ref<SortItem[]> = ref([{ key: 'system', order: "asc" }])
 const itemValue = ref("id");
-const facets: Ref<string[]> = ref(["system", "completed",
-    "plddts",])
+const facets: Ref<string[]> = ref(["system", "completed"])
 const headers: Ref<Object[]> = ref([
     { title: "System", key: "system" },
-    { title: "pdb file", key: "pdb" },
-    { title: "fasta", key: "fasta_file" },
+    // { title: "pdb file", key: "pdb" },
+    // { title: "fasta", key: "fasta_file" },
     { title: "Proteins in structure", key: 'proteins_in_the_prediction', sortable: false },
     { title: "System genes", key: "system_genes", sortable: false },
     { title: "Sys id", key: "nb_sys" },
 
     { title: "Completed", key: "completed" },
-    { title: "Predition type", key: "prediction_type" },
+    { title: "Prediction type", key: "prediction_type" },
     { title: "Num of genes", key: "system_number_of_genes" },
     { title: "pLDDT", key: "plddts" },
     { title: "iptm+ptm", key: "iptm+ptm" },
@@ -34,8 +33,12 @@ const dataTableServerProps = computed(() => {
     }
 })
 
-function namesToCollapsibleChips(names: string[]) {
-    return names.filter((it) => it !== "").map(it => ({ title: it.split("__").pop() }))
+function namesToCollapsibleChips(names: string[], file: string | null = null) {
+    if (file === null) {
+        return names.filter((it) => it !== "").map(it => ({ title: it.split("__").pop() }))
+    } else {
+        return names.filter((it) => it !== "").map(it => ({ title: it.split("__").pop(), href: `/wiki/${toSystemName(file)}/${file}` }))
+    }
 }
 
 function pdbNameToCif(pdbPath: string) {
@@ -53,7 +56,8 @@ function toSystemName(rawName: string) {
     <ServerDbTable title="Predicted Structures" db="structure" :sortBy="sortBy" :facets="facets"
         :data-table-server-props="dataTableServerProps">
         <template #[`item.proteins_in_the_prediction`]="{ item }">
-            <CollapsibleChips :items="namesToCollapsibleChips(item.proteins_in_the_prediction)"></CollapsibleChips>
+            <CollapsibleChips :items="namesToCollapsibleChips(item.proteins_in_the_prediction, item.fasta_file)">
+            </CollapsibleChips>
         </template>
         <template #[`item.system_genes`]="{ item }">
             <CollapsibleChips :items="namesToCollapsibleChips(item.system_genes)"></CollapsibleChips>
diff --git a/content/0.index.md b/content/0.index.md
index 1f3b74843ed08a692127f0e39e6d6521769dbe06..a1c92a986b2d08701d532d667fe6cd444aa2be78 100644
--- a/content/0.index.md
+++ b/content/0.index.md
@@ -4,16 +4,16 @@ layout: article
 navigation:
   icon: 'md:home'
 relevantAbstracts:
-  - doi: 10.1126/science.1138140
-  - doi: 10.1038/nmicrobiol.2017.92
-  - doi: 10.1128/jb.65.2.113-121.1953
-  - doi: 10.1126/science.aar4120
-  - doi: 10.1126/science.aba0372
-  - doi: 10.1038/s41586-019-1894-8
   - doi: 10.1128/jb.64.4.557-569.1952
+  - doi: 10.1128/jb.65.2.113-121.19
   - doi: 10.1128/JB.05535-11
+  - doi: 10.1126/science.aar4120
+  - doi: 10.1038/s41579-023-00934-x 
+  - doi: 10.1126/science.1138140
+  - doi: 10.1126/science.aba0372
   - doi: 10.1016/j.cell.2021.12.029
-
+  - doi: 10.1038/nmicrobiol.2017.92
+  - doi: 10.1038/s41586-019-1894-8
 ---
 
 ## Introduction
@@ -24,7 +24,7 @@ Bacteria and their phages have co-existed for billions of years. The pressure of
 
 The first discovered anti-phage system, a Restriction-Modification (RM) system, was described in the early 1950s ref{doi=10.1128/jb.64.4.557-569.1952, 10.1128/jb.65.2.113-121.1953}. In the following decades, a handful of other systems were discovered :ref{doi=10.1016/j.mib.2005.06.006}. In 2007, CRISPR-Cas systems were discovered to be anti-phage systems :ref{doi=10.1126/science.1138140}. As CRISPR-Cas systems and RM systems are extremely prevalent in bacteria, it was thought for some years that the antiviral immune system of bacteria had been mostly elucidated.
 
-Yet, a paradigm shift occurred following the discovery that anti-phage defense systems tend to colocalize on the bacterial genome in defense-islands :ref{doi=10.1128/JB.05535-11}. In the last decade this phenomenon has been leveraged to discover over a hundred new types of defense systems.
+Following these two major breakthroughs, knowledge of anti-phage systems remained scarce for some years. Yet, in 2011, it was revealed that anti-phage systems tend to colocalize on the bacterial genome in defense-islands :ref{doi=10.1128/JB.05535-11}. This led to a guilt-by-association hypothesis: if a gene or a set of genes is frequently found in bacterial genomes in close proximity to known defense systems, such as RM or CRISPR-Cas systems, then it might constitute a new defense system. This hypothesis was tested systematically in a landarmark study in 2018 :ref{doi=10.1126/science.aar4120} leading to the discovery of 10 novel anti-phage systems. This started the uncovering of an impressive diversity of defense systems in a very short amount of time :ref{10.1038/s41579-023-00934-x}.
 
 To date over 150 types of defense systems have been described, unveiling an unsuspected diversity of molecular mechanisms. The antiviral immune systems of bacteria therefore appear much more complex than previously envisioned, and new discoveries do not seem to be slowing down.
 
diff --git a/content/3.defense-systems/abib.md b/content/3.defense-systems/abib.md
index a9e9832212d624a6e356197b63d8a4fbd205e173..b137056a383e5ca479570ff2952c86d2ff338cdc 100644
--- a/content/3.defense-systems/abib.md
+++ b/content/3.defense-systems/abib.md
@@ -9,12 +9,24 @@ tableColumns:
     Sensor: Unknown
     Activator: Unknown
     Effector: Unknown
+contributors:
+    - Nathalie Bechon
 relevantAbstracts:
     - doi: 10.1023/A:1002027321171
     - doi: 10.1016/j.mib.2005.06.006
+    - doi: 10.1128/aem.57.12.3547-3551.1991
+    - doi: 10.1046/j.1365-2958.1996.371896.x
 ---
 
 # AbiB
+
+## Description
+AbiB is a single-protein abortive infection defense system from *Lactococcus* that degrades mRNA.
+
+## Molecular mechanism
+AbiB system is still poorly understood. It is a single-protein system that was described as an abortive infection system. Upon phage infection, AbiB activation leads to a strong degradation of mRNAs:ref{doi=10.1046/j.1365-2958.1996.371896.x} that is expected to be the mechanism of phage inhibition. AbiB expression is constitutive and does increase during phage infection. It is only activated during phage infection, most likely through the recognition of an early phage protein. Which protein, and whether this activation is direct or indirect remains to be elucidated.
+
+## Example of genomic structure
 The AbiB system is composed of one protein: AbiB.
 
 Here is an example found in the RefSeq database: 
diff --git a/content/3.defense-systems/abiu.md b/content/3.defense-systems/abiu.md
index 97814afc25df4611378b86a9146fb5de52679782..497cb4cef52c3084492255313ebbddf85fd23e50 100644
--- a/content/3.defense-systems/abiu.md
+++ b/content/3.defense-systems/abiu.md
@@ -3,16 +3,29 @@ title: AbiU
 layout: article
 tableColumns:
     article:
-      doi: 10.1016/j.mib.2005.06.006
+      doi: 10.1128/AEM.67.11.5225-5232.2001
       abstract: |
-        Abortive infection (Abi) systems, also called phage exclusion, block phage multiplication and cause premature bacterial cell death upon phage infection. This decreases the number of progeny particles and limits their spread to other cells allowing the bacterial population to survive. Twenty Abi systems have been isolated in Lactococcus lactis, a bacterium used in cheese-making fermentation processes, where phage attacks are of economical importance. Recent insights in their expression and mode of action indicate that, behind diverse phenotypic and molecular effects, lactococcal Abis share common traits with the well-studied Escherichia coli systems Lit and Prr. Abis are widespread in bacteria, and recent analysis indicates that Abis might have additional roles other than conferring phage resistance.
+        This study reports on the identification and characterization of a novel abortive infection system, AbiU, from Lactococcus lactis. AbiU confers resistance to phages from the three main industrially relevant lactococcal phage species: c2, 936, and P335. The presence of AbiU reduced the efficiency of plaquing against specific phage from each species as follows: 3.7 × 10−1, 1.0 × 10−2, and 1.0 × 10−1, respectively. abiU involves two open reading frames,abiU1 (1,772 bp) and abiU2 (1,019 bp). Evidence indicates that AbiU1 is responsible for phage resistance and that AbiU2 may downregulate phage resistance against 936 and P335 type phages but not c2 type phage. AbiU appeared to delay transcription of both phage 712 and c2, with the effect being more marked on phage c2.
     Sensor: Unknown
     Activator: Unknown
     Effector: Unknown
     PFAM: PF10592
+contributor: 
+    - Nathalie Bechon
+relevant-abstracts
+    - doi: 10.1023/A:1002027321171
+    - doi: 10.1016/j.mib.2005.06.006
+    - doi: 10.1128/AEM.67.11.5225-5232.2001
 ---
 
 # AbiU
+
+## Description
+AbiU is a single-protein abortive infection defense system described in *Lactococcus*. 
+
+## Molecular mechanism
+The molecular mechanism of AbiU is not well understood. It was shown that cells expressing AbiU showed delayed transcription of phage DNA, although how it is achieved, or how does it protect the bacterial culture is not understood. AbiU was shown to be encoded near another gene that seems to be an inhibitor of defense :ref{doi=10.1128/AEM.67.11.5225-5232.2001}.
+
 ## Example of genomic structure
 
 The AbiU system is composed of one protein: AbiU.
@@ -70,14 +83,3 @@ end
     style Title3 fill:none,stroke:none,stroke-width:none
     style Title4 fill:none,stroke:none,stroke-width:none
 </mermaid>
-## Relevant abstracts
-
-::relevant-abstracts
----
-items:
-    - doi: 10.1023/A:1002027321171
-    - doi: 10.1016/j.mib.2005.06.006
-
----
-::
-
diff --git a/content/3.defense-systems/brex.md b/content/3.defense-systems/brex.md
index 03ba456f9a740655cbecf61af13b22f43e3dfdef..255e8c7fe03295c8ba71002f67dfa972ef288aaa 100644
--- a/content/3.defense-systems/brex.md
+++ b/content/3.defense-systems/brex.md
@@ -10,6 +10,8 @@ tableColumns:
     Activator: Unknown
     Effector: Unknown
     PFAM: PF00069, PF00176, PF00270, PF00271, PF01507, PF01555, PF02384, PF04851, PF07669, PF07714, PF08378, PF08665, PF08747, PF08849, PF10923, PF13337, PF16565
+contributors:
+    - Marian Dominguez-Mirazo
 relevantAbstracts:
     - doi: 10.1093/nar/gkaa290
     - doi: 10.1093/nar/gky1125
@@ -20,30 +22,30 @@ relevantAbstracts:
 ## Description
 
 
-BREX (for Bacteriophage Exclusion) is a family of anti-phage defense systems. BREX systems are active against both lytic and lysogenic phages. They allow phage adsorption but block phage DNA replication, and are considered to be [RM](/defense-systems/rm)-like systems (1,2). BREX systems are found in around 10% of sequenced microbial genomes (1).
+BREX (for Bacteriophage Exclusion) is a family of anti-phage defense systems. BREX systems are active against both lytic and lysogenic phages. They allow phage adsorption but block phage DNA replication, and are considered to be [RM](/defense-systems/rm)-like systems :ref{doi=10.15252/embj.201489455,10.1093/nar/gkaa290}. BREX systems are found in around 10% of sequenced microbial genomes :ref{doi=10.15252/embj.201489455}.
 
-BREX systems can be divided into six subtypes, and are encoded by 4 to 8 genes, some of these genes being mandatory while others are subtype-specific (1).
+BREX systems can be divided into six subtypes, and are encoded by 4 to 8 genes, some of these genes being mandatory while others are subtype-specific :ref{doi=10.15252/embj.201489455}.
 
 ## Molecular mechanism
 
-*B. cereus* BREX Type 1 system was reported to methylate target motifs in the bacterial genome (1). The methylation activity of this system has been hypothesized to allow for self from non-self discrimination, as it is the case for Restriction-Modification ([RM)](/defense-systems/rm) systems. 
+*B. cereus* BREX Type 1 system was reported to methylate target motifs in the bacterial genome :ref{doi=10.15252/embj.201489455}. The methylation activity of this system has been hypothesized to allow for self from non-self discrimination, as it is the case for Restriction-Modification ([RM)](/defense-systems/rm) systems. 
 
-However, the mechanism through which BREX Type 1 systems defend against phages is distinct from RM systems, and does not seem to degrade phage nucleic acids (1). 
+However, the mechanism through which BREX Type 1 systems defend against phages is distinct from RM systems, and does not seem to degrade phage nucleic acids :ref{doi=10.15252/embj.201489455}. 
 
 To date, BREX molecular mechanism remains to be described.
 
 
 ## Example of genomic structure
 
-The BREX system have been describe in a total of 6 subsystems.
+There are 6 subsystems described for the BREX system.
 
-BREX systems necessarily include the pglZ gene (encoding for a putative alkaline phosphatase), which is accompanied by either brxC or pglY. These two genes share only a distant homology but have been hypothesized to fulfill the same function among the different BREX subtypes (1).
+BREX systems necessarily include the pglZ gene (encoding for a putative alkaline phosphatase), which is accompanied by either brxC or pglY. These two genes share only a distant homology but have been hypothesized to fulfill the same function among the different BREX subtypes :ref{doi=10.15252/embj.201489455}.
 
-Goldfarb and colleagues reported a 6-gene cassette from *Bacillus cereus* as being the model for BREX Type 1. BREX Type 1 are the most widespread BREX systems, and present two core genes (pglZ and brxC).  Four other genes  are associated with BREX Type 1 : *pglX (*encoding for a putative methyltransferase),  *brxA (*encoding an RNA-binding anti-termination protein)*, brxB (*unknown functio*n), brxC (*encoding for a protein with ATP-binding domain) and *brxL* (encoding for a putative protease) (1,2).
+Goldfarb and colleagues reported a 6-gene cassette from *Bacillus cereus* as being the model for BREX Type 1. BREX Type 1 are the most widespread BREX systems, and present two core genes (pglZ and brxC).  Four other genes  are associated with BREX Type 1 : *pglX (*encoding for a putative methyltransferase),  *brxA (*encoding an RNA-binding anti-termination protein)*, brxB (*unknown functio*n), brxC (*encoding for a protein with ATP-binding domain) and *brxL* (encoding for a putative protease) :ref{doi=10.15252/embj.201489455,10.1093/nar/gkaa290}.
 
-Type 2 BREX systems include the system formerly known as Pgl , which is comprised of four genes  (pglW, X, Y, and Z) (3), to which Goldfarb and colleagues found often associated two additional genes (brxD, and brxHI).
+Type 2 BREX systems include the system formerly known as Pgl, which is comprised of four genes (pglW, X, Y, and Z) :ref{doi=10.1093/nar/gky1125}, to which :ref{doi=10.15252/embj.201489455} found often associated two additional genes (brxD, and brxHI).
 
-Although 4 additional BREX subtypes have been proposed, BREX Type 1 and Type 2 remain the only ones to be experimentally validated. A detailed description of the other subtypes can be found in Goldfarb *et al*., 2015.
+Although 4 additional BREX subtypes have been proposed, BREX Type 1 and Type 2 remain the only ones to be experimentally validated. A detailed description of the other subtypes can be found in :ref{doi=10.15252/embj.201489455}.
 
 Here is some example found in the RefSeq database:
 
diff --git a/content/3.defense-systems/mokosh.md b/content/3.defense-systems/mokosh.md
index 5373c9a07deedb702db438182fc136e5cfdf5445..5509c215d320be6c19aac18323da8dfa1888fce7 100644
--- a/content/3.defense-systems/mokosh.md
+++ b/content/3.defense-systems/mokosh.md
@@ -10,9 +10,21 @@ tableColumns:
     Activator: Unknown
     Effector: Unknown
     PFAM: PF00069, PF07714, PF08378, PF13086, PF13087, PF13091, PF13245, PF13604
+contributors:
+    - Marian Dominguez-Mirazo
+relevantAbstract:
+    - doi: 10.1016/j.chom.2022.09.017
+    - doi: 10.1101/2022.12.12.520048
 ---
 
 # Mokosh
+
+## Description
+The Mokosh system was discovered in *E. coli* by examining clusters of genes enrinched in defense islands :ref{doi=10.1016/j.chom.2022.09.017}. It contains genes with an RNA helicase domain and a predicted phospholipase D domain (PLD) nuclease domain. Mutations in the ATP-binding domain of the helicase, and in the active site of the PLD nuclease disrupt phage defense. The system is divided in two types. Mokosh type I has two genes, one gene containing the RNA helicase domain and an additional serine-threonine kinase domain (STK), and one gene containing the PLD nuclease. Type II Mokosh is formed of a single gene containing both the helicase and nuclease domains. Recent efforts have shown homology between the Mokosh system and human proteins involved in the piRNA pathway, a defense mechanism of animal germlines that prevents expression of transposable elements :ref{doi=10.1101/2022.12.12.520048}. The system gets its name from the goddess protector of women's destiny in Slavic mythology :ref{doi=10.1016/j.chom.2022.09.017}.
+
+## Molecular mechanisms
+As far as we are aware, the molecular mechanism is unknown. 
+
 ## Example of genomic structure
 
 The Mokosh system have been describe in a total of 2 subsystems.
@@ -126,13 +138,5 @@ end
     style Title3 fill:none,stroke:none,stroke-width:none
     style Title4 fill:none,stroke:none,stroke-width:none
 </mermaid>
-## Relevant abstracts
 
-::relevant-abstracts
----
-items:
-    - doi: 10.1016/j.chom.2022.09.017
-
----
-::
 
diff --git a/content/3.defense-systems/old_exonuclease.md b/content/3.defense-systems/old_exonuclease.md
index d87f647bf994e64711bc05ca07733ae66668314e..be35419789befee2618fed2688db18f9b93bd93e 100644
--- a/content/3.defense-systems/old_exonuclease.md
+++ b/content/3.defense-systems/old_exonuclease.md
@@ -8,11 +8,23 @@ tableColumns:
         The Old protein of bacteriophage P2 is responsible for interference with the growth of phage lambda and for killing of recBC mutant Escherichia coli. We have purified Old fused to the maltose-binding protein to 95% purity and characterized its enzymatic properties. The Old protein fused to maltose-binding protein has exonuclease activity on double-stranded DNA as well as nuclease activity on single-stranded DNA and RNA. The direction of digestion of double-stranded DNA is from 5' to 3', and digestion initiates at either the 5'-phosphoryl or 5'-hydroxyl terminus. The nuclease is active on nicked circular DNA, degrades DNA in a processive manner, and releases 5'-phosphoryl mononucleotides.
     Sensor: Unknown
     Activator: Unknown
-    Effector: Unknown
+    Effector: Nucleic acid degrading
     PFAM: PF13175, PF13304
+contributors:
+    - Marian Dominguez-Mirazo
+relevantAbstracts:
+    - doi: 10.1128/jb.177.3.497-501.1995
+    - doi: 10.1128/jb.177.3.497-501.1995
 ---
 
 # Old_exonuclease
+
+## Description
+The OLD proteins are a family of nucleases present in bacteria, archaea, and viruses :ref{doi=10.1093/nar/gkz703}. The OLD protein found in the P2 *E.coli* prophage is the best characterized one. The protein is an exonuclease that digests dsDNA in the 5' to 3' direction :ref{doi=10.1128/jb.177.3.497-501.1995}. It also has nuclease activity against single stranded DNA and RNA :ref{doi=10.1128/jb.177.3.497-501.1995}. It's been shown to protect against phage lambda :ref{doi=10.1128/jb.177.3.497-501.1995}, and when cloned with the P2 Tin accesory gene, it was shown to protect against other *E. coli* phages :ref{doi=10.1016/j.chom.2022.02.018}. The protein also contains an ATPase domain that affects nuclease activity :ref{doi=10.1128/jb.177.3.497-501.1995}. Inhibition of the RecBCD complex activates the OLD nuclease :ref{doi=10.1016/j.mib.2023.102325}. OLD proteins are divided into two classes based on amino acid sequence conservation and gene neighborhood :ref{doi=10.1093/nar/gkz703}. The P2 associated protein belongs to class 2 :ref{doi=10.1093/nar/gkz703}. 
+
+## Molecular Mechanisms
+The old_exonuclease is dsDNA exonuclease that digest in the 5' to 3' direction :ref{doi=10.1128/jb.177.3.497-501.1995}. To our knowledge, other aspects of the molecular mechanisms remain unknown. 
+
 ## Example of genomic structure
 
 The Old_exonuclease system is composed of one protein: Old_exonuclease.
@@ -71,9 +83,3 @@ end
     style Title3 fill:none,stroke:none,stroke-width:none
     style Title4 fill:none,stroke:none,stroke-width:none
 </mermaid>
-## Relevant abstracts
-
-**Rousset, F. et al. Phages and their satellites encode hotspots of antiviral systems. Cell Host & Microbe 30, 740-753.e5 (2022).**
-Bacteria carry diverse genetic systems to defend against viral infection, some of which are found within prophages where they inhibit competing viruses. Phage satellites pose additional pressures on phages by hijacking key viral elements to their own benefit. Here, we show that E. coli P2-like phages and their parasitic P4-like satellites carry hotspots of genetic variation containing reservoirs of anti-phage systems. We validate the activity of diverse systems and describe PARIS, an abortive infection system triggered by a phage-encoded anti-restriction protein. Antiviral hotspots participate in inter-viral competition and shape dynamics between the bacterial host, P2-like phages, and P4-like satellites. Notably, the anti-phage activity of satellites can benefit the helper phage during competition with virulent phages, turning a parasitic relationship into a mutualistic one. Anti-phage hotspots are present across distant species and constitute a substantial source of systems that participate in the competition between mobile genetic elements.
-
-
diff --git a/content/3.defense-systems/pd-t4-4.md b/content/3.defense-systems/pd-t4-4.md
index 21c35ecf5417359d2b0cddf0dd4287459635c7c5..8eb17137f0068cf1d5e42dc98a7c90e1d9d98387 100644
--- a/content/3.defense-systems/pd-t4-4.md
+++ b/content/3.defense-systems/pd-t4-4.md
@@ -10,9 +10,19 @@ tableColumns:
     Activator: Unknown
     Effector: Unknown
     PFAM: PF13175, PF13304
+contributors:
+    - Nathalie Bechon
+relevantAbstracts
+    - doi: 10.1038/s41564-022-01219-4
 ---
 
 # PD-T4-4
+## Description
+PD-T4-4 is a defense system composed of two proteins, a P-loop NTPase and a nuclease, that is most likely protecting the bacterial population through abortive infection. It was identified from an ICE in an *E. coli* genome.
+
+## Molecular mechanisms
+PD-T4-4 molecular mechanism is currently unknown, although it is most likely an abortive infection system.
+
 ## Example of genomic structure
 
 The PD-T4-4 system is composed of 2 proteins: PD-T4-4_A and, PD-T4-4_B.
@@ -21,7 +31,7 @@ Here is an example found in the RefSeq database:
 
 ![pd-t4-4](/pd-t4-4/PD-T4-4.svg){max-width=750px}
 
-PD-T4-4 system in the genome of *Escherichia coli* (GCF_013376895.1) is composed of 2 proteins: PD-T4-4_B (WP_176670803.1)and, PD-T4-4_A (WP_027920142.1).
+PD-T4-4 system in the genome of *Escherichia coli* (GCF_013376895.1) is composed of 2 proteins: PD-T4-4_B (WP_176670803.1) and, PD-T4-4_A (WP_027920142.1).
 
 ## Distribution of the system among prokaryotes
 
@@ -78,13 +88,4 @@ end
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     style Title4 fill:none,stroke:none,stroke-width:none
 </mermaid>
-## Relevant abstracts
-
-::relevant-abstracts
----
-items:
-    - doi: 10.1038/s41564-022-01219-4
-
----
-::
 
diff --git a/content/3.defense-systems/pd-t4-6.md b/content/3.defense-systems/pd-t4-6.md
index f0e618cdddf5bccd45846e27307c20b8b726f503..5eb31a5ee2aaf8287eb9fa9e0a7df04ea76ce495 100644
--- a/content/3.defense-systems/pd-t4-6.md
+++ b/content/3.defense-systems/pd-t4-6.md
@@ -5,14 +5,25 @@ tableColumns:
     article:
       doi: 10.1038/s41564-022-01219-4
       abstract: |
-        The ancient, ongoing coevolutionary battle between bacteria and their viruses, bacteriophages, has given rise to sophisticated immune systems including restriction-modification and CRISPR-Cas. Many additional anti-phage systems have been identified using computational approaches based on genomic co-location within defence islands, but these screens may not be exhaustive. Here we developed an experimental selection scheme agnostic to genomic context to identify defence systems in 71 diverse E. coli strains. Our results unveil 21 conserved defence systems, none of which were previously detected as enriched in defence islands. Additionally, our work indicates that intact prophages and mobile genetic elements are primary reservoirs and distributors of defence systems in E. coli, with defence systems typically carried in specific locations or hotspots. These hotspots encode dozens of additional uncharacterized defence system candidates. Our findings reveal an extended landscape of antiviral immunity in E. coli and provide an approach for mapping defence systems in other species.
+        The ancient, ongoing coevolutionary battle between bacteria and their viruses, bacteriophages, has given rise to sophisticated immune systems including restriction-modification and CRISPR-Cas. Many additional anti-phage systems have been identified using computational approaches based on genomic co-location within defence islands, but these screens may not be exhaustive. Here we developed an experimental selection scheme agnostic to genomic context to identify defence systems in 71 diverse *E. coli* strains. Our results unveil 21 conserved defence systems, none of which were previously detected as enriched in defence islands. Additionally, our work indicates that intact prophages and mobile genetic elements are primary reservoirs and distributors of defence systems in *E. coli*, with defence systems typically carried in specific locations or hotspots. These hotspots encode dozens of additional uncharacterized defence system candidates. Our findings reveal an extended landscape of antiviral immunity in *E. coli* and provide an approach for mapping defence systems in other species.
     Sensor: Unknown
     Activator: Unknown
     Effector: Unknown
     PFAM: PF00069, PF03793, PF07714
+contributors: 
+    - Marian Dominguez-Mirazo
+relevantAbstracts:
+    - doi: 10.1038/s41564-022-01219-4
+
 ---
 
 # PD-T4-6
+## Description
+The PD-T4-6 system is composed of a single protein. It was discovered via a selection screening of 71 *E. coli* strains challenged with diverse phage. The name stands from Phage Defense (PD) and the phage with which the strain was challenge (T4) ref:{doi=10.1038/s41564-022-01219-4}. The system has been identified as an Abortive Infection (Abi) system ref:{doi=10.1038/s41564-022-01219-4,10.1016/j.mib.2023.102312}. The protein was found within a P2-like prophage and contains a predicted Der/Thr kinase domain. Site-specific mutation in the domain reduces phage protection ref:{doi=10.1038/s41564-022-01219-4}. 
+
+## Molecular mechanisms
+As far as we are aware, the molecular mechanism is unknown.
+
 ## Example of genomic structure
 
 The PD-T4-6 system is composed of one protein: PD-T4-6.
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     style Title4 fill:none,stroke:none,stroke-width:none
 </mermaid>
-## Relevant abstracts
-
-::relevant-abstracts
----
-items:
-    - doi: 10.1038/s41564-022-01219-4
-
----
-::
-