From 23b068702b24bac22a64656d8aae78030e7f87ea Mon Sep 17 00:00:00 2001 From: Remi PLANEL <rplanel@pasteur.fr> Date: Mon, 18 Sep 2023 20:32:18 +0200 Subject: [PATCH] Update content to optional title and abstract compo --- content/0.index.md | 16 +++++++++------- content/2.defense-systems/abib.md | 4 ++-- content/2.defense-systems/abic.md | 4 ++-- content/2.defense-systems/abid.md | 4 ++-- content/2.defense-systems/abie.md | 6 +++--- content/2.defense-systems/abig.md | 4 ++-- content/2.defense-systems/abih.md | 6 +++--- content/2.defense-systems/abii.md | 4 ++-- content/2.defense-systems/abij.md | 4 ++-- content/2.defense-systems/abik.md | 6 +++--- content/2.defense-systems/abil.md | 4 ++-- content/2.defense-systems/abin.md | 4 ++-- content/2.defense-systems/abio.md | 4 ++-- content/2.defense-systems/abip2.md | 6 +++--- content/2.defense-systems/abiq.md | 6 +++--- content/2.defense-systems/abir.md | 4 ++-- content/2.defense-systems/abit.md | 4 ++-- content/2.defense-systems/abiu.md | 4 ++-- content/2.defense-systems/abiv.md | 4 ++-- content/2.defense-systems/abiz.md | 4 ++-- content/2.defense-systems/aditi.md | 2 +- content/2.defense-systems/avast.md | 4 ++-- content/2.defense-systems/azaca.md | 2 +- content/2.defense-systems/borvo.md | 2 +- content/2.defense-systems/brex.md | 6 +++--- content/2.defense-systems/bsta.md | 2 +- content/2.defense-systems/bunzi.md | 2 +- content/2.defense-systems/caprel.md | 2 +- content/2.defense-systems/cbass.md | 10 +++++----- content/2.defense-systems/dartg.md | 2 +- content/2.defense-systems/dazbog.md | 2 +- content/2.defense-systems/dctpdeaminase.md | 4 +--- content/2.defense-systems/dgtpase.md | 2 +- content/2.defense-systems/disarm.md | 4 ++-- content/2.defense-systems/dmdde.md | 2 +- content/2.defense-systems/dnd.md | 4 ++-- content/2.defense-systems/dodola.md | 2 +- content/2.defense-systems/dpd.md | 2 +- content/2.defense-systems/drt.md | 4 ++-- content/2.defense-systems/druantia.md | 2 +- content/2.defense-systems/dsr.md | 4 ++-- content/2.defense-systems/eleos.md | 2 +- content/2.defense-systems/gabija.md | 4 ++-- content/2.defense-systems/gao_ape.md | 2 +- content/2.defense-systems/gao_her.md | 2 +- content/2.defense-systems/gao_hhe.md | 2 +- content/2.defense-systems/gao_iet.md | 2 +- content/2.defense-systems/gao_mza.md | 2 +- content/2.defense-systems/gao_ppl.md | 2 +- content/2.defense-systems/gao_qat.md | 2 +- content/2.defense-systems/gao_rl.md | 2 +- content/2.defense-systems/gao_tery.md | 2 +- content/2.defense-systems/gao_tmn.md | 2 +- content/2.defense-systems/gao_upx.md | 2 +- content/2.defense-systems/gasdermin.md | 2 +- content/2.defense-systems/gp29_gp30.md | 2 +- content/2.defense-systems/hachiman.md | 2 +- content/2.defense-systems/isg15-like.md | 2 +- content/2.defense-systems/kiwa.md | 2 +- content/2.defense-systems/lamassu-fam.md | 6 +++--- content/2.defense-systems/lit.md | 6 +++--- content/2.defense-systems/menshen.md | 2 +- content/2.defense-systems/mok_hok_sok.md | 2 +- content/2.defense-systems/mokosh.md | 2 +- content/2.defense-systems/nhi.md | 2 +- content/2.defense-systems/nixi.md | 2 +- content/2.defense-systems/nlr.md | 2 +- content/2.defense-systems/old/abia.md | 8 ++++---- content/2.defense-systems/old/avast.md | 4 ++-- content/2.defense-systems/old/paris.md | 6 +++--- content/2.defense-systems/olokun.md | 2 +- content/2.defense-systems/pago.md | 12 ++++++------ content/2.defense-systems/pd-lambda-1.md | 2 +- content/2.defense-systems/pd-lambda-2.md | 2 +- content/2.defense-systems/pd-lambda-3.md | 2 +- content/2.defense-systems/pd-lambda-4.md | 2 +- content/2.defense-systems/pd-lambda-5.md | 2 +- content/2.defense-systems/pd-lambda-6.md | 2 +- content/2.defense-systems/pd-t4-1.md | 2 +- content/2.defense-systems/pd-t4-10.md | 2 +- content/2.defense-systems/pd-t4-2.md | 2 +- content/2.defense-systems/pd-t4-3.md | 2 +- content/2.defense-systems/pd-t4-4.md | 2 +- content/2.defense-systems/pd-t4-5.md | 2 +- content/2.defense-systems/pd-t4-6.md | 2 +- content/2.defense-systems/pd-t4-7.md | 2 +- content/2.defense-systems/pd-t4-8.md | 2 +- content/2.defense-systems/pd-t4-9.md | 2 +- content/2.defense-systems/pd-t7-1.md | 2 +- content/2.defense-systems/pd-t7-2.md | 2 +- content/2.defense-systems/pd-t7-3.md | 2 +- content/2.defense-systems/pd-t7-4.md | 2 +- content/2.defense-systems/pd-t7-5.md | 2 +- content/2.defense-systems/pfiat.md | 2 +- content/2.defense-systems/pif.md | 6 +++--- content/2.defense-systems/prrc.md | 4 ++-- content/2.defense-systems/psyrta.md | 4 ++-- content/2.defense-systems/pycsar.md | 2 +- content/2.defense-systems/radar.md | 2 +- content/2.defense-systems/retron.md | 4 ++-- content/2.defense-systems/rexab.md | 2 +- content/2.defense-systems/rloc.md | 4 ++-- content/2.defense-systems/rm.md | 2 +- content/2.defense-systems/rnlab.md | 2 +- content/2.defense-systems/rosmerta.md | 2 +- content/2.defense-systems/rst_2tm_1tm_tir.md | 2 +- content/2.defense-systems/rst_3hp.md | 2 +- content/2.defense-systems/rst_duf4238.md | 2 +- content/2.defense-systems/rst_gop_beta_cll.md | 2 +- content/2.defense-systems/rst_helicaseduf2290.md | 2 +- content/2.defense-systems/rst_hydrolase-3tm.md | 2 +- content/2.defense-systems/rst_rt-nitrilase-tm.md | 2 +- content/2.defense-systems/rst_tir-nlr.md | 2 +- content/2.defense-systems/sanata.md | 2 +- content/2.defense-systems/sefir.md | 2 +- content/2.defense-systems/septu.md | 6 +++--- content/2.defense-systems/shango.md | 2 +- content/2.defense-systems/shedu.md | 2 +- content/2.defense-systems/shosta.md | 6 +++--- content/2.defense-systems/sofic.md | 2 +- content/2.defense-systems/spbk.md | 2 +- content/2.defense-systems/sspbcde.md | 4 ++-- content/2.defense-systems/stk2.md | 2 +- content/2.defense-systems/thoeris.md | 4 ++-- content/2.defense-systems/tiamat.md | 2 +- content/2.defense-systems/uzume.md | 2 +- content/2.defense-systems/viperin.md | 2 +- content/2.defense-systems/wadjet.md | 2 +- content/2.defense-systems/zorya.md | 4 ++-- 129 files changed, 201 insertions(+), 201 deletions(-) diff --git a/content/0.index.md b/content/0.index.md index f66ffa6a..dcf8f3e5 100644 --- a/content/0.index.md +++ b/content/0.index.md @@ -50,12 +50,14 @@ Tal N, Sorek R. SnapShot: Bacterial immunity. Cell. 2022 Feb 3;185(3):578-578.e1 ::article-doi-list --- items: - - 10.1126/science.1138140 - - 10.1038/nmicrobiol.2017.92 - - 10.1128/jb.65.2.113-121.1953 - - 10.1126/science.aar4120 - - 10.1126/science.aba0372 - - 10.1038/s41586-019-1894-8 - - 10.1128/jb.64.4.557-569.1952 + - doi: 10.1126/science.1138140 + abstract: | + Clustered regularly interspaced short palindromic repeats (CRISPR) are a distinctive feature of the genomes of most Bacteria and Archaea and are thought to be involved in resistance to bacteriophages. We found that, after viral challenge, bacteria integrated new spacers derived from phage genomic sequences. Removal or addition of particular spacers modified the phage-resistance phenotype of the cell. Thus, CRISPR, together with associated cas genes, provided resistance against phages, and resistance specificity is determined by spacer-phage sequence similarity. + - doi: 10.1038/nmicrobiol.2017.92 + - doi: 10.1128/jb.65.2.113-121.1953 + - doi: 10.1126/science.aar4120 + - doi: 10.1126/science.aba0372 + - doi: 10.1038/s41586-019-1894-8 + - doi: 10.1128/jb.64.4.557-569.1952 --- :: diff --git a/content/2.defense-systems/abib.md b/content/2.defense-systems/abib.md index 1ed106de..c3ad1f3e 100644 --- a/content/2.defense-systems/abib.md +++ b/content/2.defense-systems/abib.md @@ -36,8 +36,8 @@ A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect aga ::article-doi-list --- items: - - 10.1023/A:1002027321171 - - 10.1016/j.mib.2005.06.006 + - doi: 10.1023/A:1002027321171 + - doi: 10.1016/j.mib.2005.06.006 --- :: diff --git a/content/2.defense-systems/abic.md b/content/2.defense-systems/abic.md index 6c9ca705..63fc6885 100644 --- a/content/2.defense-systems/abic.md +++ b/content/2.defense-systems/abic.md @@ -38,8 +38,8 @@ A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect aga ::article-doi-list --- items: - - 10.1023/A:1002027321171 - - 10.1016/j.mib.2005.06.006 + - doi: 10.1023/A:1002027321171 + - doi: 10.1016/j.mib.2005.06.006 --- :: diff --git a/content/2.defense-systems/abid.md b/content/2.defense-systems/abid.md index f01d7a28..05fd1465 100644 --- a/content/2.defense-systems/abid.md +++ b/content/2.defense-systems/abid.md @@ -32,8 +32,8 @@ A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect aga ::article-doi-list --- items: - - 10.1023/A:1002027321171 - - 10.1016/j.mib.2005.06.006 + - doi: 10.1023/A:1002027321171 + - doi: 10.1016/j.mib.2005.06.006 --- :: diff --git a/content/2.defense-systems/abie.md b/content/2.defense-systems/abie.md index 0111e34c..dacd3c15 100644 --- a/content/2.defense-systems/abie.md +++ b/content/2.defense-systems/abie.md @@ -44,9 +44,9 @@ A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect aga ::article-doi-list --- items: - - 10.1023/A:1002027321171 - - 10.1016/j.mib.2005.06.006 - - 10.1093/nar/gkt1419 + - doi: 10.1023/A:1002027321171 + - doi: 10.1016/j.mib.2005.06.006 + - doi: 10.1093/nar/gkt1419 --- :: diff --git a/content/2.defense-systems/abig.md b/content/2.defense-systems/abig.md index f6945753..c3a6cb8a 100644 --- a/content/2.defense-systems/abig.md +++ b/content/2.defense-systems/abig.md @@ -32,8 +32,8 @@ A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect aga ::article-doi-list --- items: - - 10.1023/A:1002027321171 - - 10.1016/j.mib.2005.06.006 + - doi: 10.1023/A:1002027321171 + - doi: 10.1016/j.mib.2005.06.006 --- :: diff --git a/content/2.defense-systems/abih.md b/content/2.defense-systems/abih.md index 76c6e630..7560ae6e 100644 --- a/content/2.defense-systems/abih.md +++ b/content/2.defense-systems/abih.md @@ -38,9 +38,9 @@ A system from *lactococci* in *lactococci* has an anti-phage effect against 936, ::article-doi-list --- items: - - 10.1023/A:1002027321171 - - 10.1016/j.mib.2005.06.006 - - 10.1111/j.1574-6968.1996.tb08446.x + - doi: 10.1023/A:1002027321171 + - doi: 10.1016/j.mib.2005.06.006 + - doi: 10.1111/j.1574-6968.1996.tb08446.x --- :: diff --git a/content/2.defense-systems/abii.md b/content/2.defense-systems/abii.md index 29cf153b..a53e4fc0 100644 --- a/content/2.defense-systems/abii.md +++ b/content/2.defense-systems/abii.md @@ -33,8 +33,8 @@ A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect aga ::article-doi-list --- items: - - 10.1023/A:1002027321171 - - 10.1016/j.mib.2005.06.006 + - doi: 10.1023/A:1002027321171 + - doi: 10.1016/j.mib.2005.06.006 --- :: diff --git a/content/2.defense-systems/abij.md b/content/2.defense-systems/abij.md index c0fda6f5..449c1f8e 100644 --- a/content/2.defense-systems/abij.md +++ b/content/2.defense-systems/abij.md @@ -33,8 +33,8 @@ A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect aga ::article-doi-list --- items: - - 10.1023/A:1002027321171 - - 10.1016/j.mib.2005.06.006 + - doi: 10.1023/A:1002027321171 + - doi: 10.1016/j.mib.2005.06.006 --- :: diff --git a/content/2.defense-systems/abik.md b/content/2.defense-systems/abik.md index 03e4a8ad..95064f3a 100644 --- a/content/2.defense-systems/abik.md +++ b/content/2.defense-systems/abik.md @@ -33,9 +33,9 @@ A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect aga ::article-doi-list --- items: - - 10.1023/A:1002027321171 - - 10.1016/j.mib.2005.06.006 - - 10.1093/nar/gkac467 + - doi: 10.1023/A:1002027321171 + - doi: 10.1016/j.mib.2005.06.006 + - doi: 10.1093/nar/gkac467 --- :: diff --git a/content/2.defense-systems/abil.md b/content/2.defense-systems/abil.md index 1acfc572..a430cc78 100644 --- a/content/2.defense-systems/abil.md +++ b/content/2.defense-systems/abil.md @@ -33,8 +33,8 @@ A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect aga ::article-doi-list --- items: - - 10.1023/A:1002027321171 - - 10.1016/j.mib.2005.06.006 + - doi: 10.1023/A:1002027321171 + - doi: 10.1016/j.mib.2005.06.006 --- :: diff --git a/content/2.defense-systems/abin.md b/content/2.defense-systems/abin.md index fbe6d414..8bf8cc5d 100644 --- a/content/2.defense-systems/abin.md +++ b/content/2.defense-systems/abin.md @@ -33,8 +33,8 @@ A system from *lactococcal prophage* in *lactococci* has an anti-phage effect ag ::article-doi-list --- items: - - 10.1023/A:1002027321171 - - 10.1016/j.mib.2005.06.006 + - doi: 10.1023/A:1002027321171 + - doi: 10.1016/j.mib.2005.06.006 --- :: diff --git a/content/2.defense-systems/abio.md b/content/2.defense-systems/abio.md index 6ca858e8..e7e1d171 100644 --- a/content/2.defense-systems/abio.md +++ b/content/2.defense-systems/abio.md @@ -33,8 +33,8 @@ A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect aga ::article-doi-list --- items: - - 10.1023/A:1002027321171 - - 10.1016/j.mib.2005.06.006 + - doi: 10.1023/A:1002027321171 + - doi: 10.1016/j.mib.2005.06.006 --- :: diff --git a/content/2.defense-systems/abip2.md b/content/2.defense-systems/abip2.md index 014c1d02..d27812ac 100644 --- a/content/2.defense-systems/abip2.md +++ b/content/2.defense-systems/abip2.md @@ -35,9 +35,9 @@ A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect aga ::article-doi-list --- items: - - 10.1023/A:1002027321171 - - 10.1016/j.mib.2005.06.006 - - 10.1093/nar/gkac467 + - doi: 10.1023/A:1002027321171 + - doi: 10.1016/j.mib.2005.06.006 + - doi: 10.1093/nar/gkac467 --- :: diff --git a/content/2.defense-systems/abiq.md b/content/2.defense-systems/abiq.md index f7d012e1..f676d709 100644 --- a/content/2.defense-systems/abiq.md +++ b/content/2.defense-systems/abiq.md @@ -33,9 +33,9 @@ A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect aga ::article-doi-list --- items: - - 10.1023/A:1002027321171 - - 10.1016/j.mib.2005.06.006 - - 10.1128/AEM.64.12.4748-4756.1998 + - doi: 10.1023/A:1002027321171 + - doi: 10.1016/j.mib.2005.06.006 + - doi: 10.1128/AEM.64.12.4748-4756.1998 --- :: diff --git a/content/2.defense-systems/abir.md b/content/2.defense-systems/abir.md index 0d1b43c1..a20e293e 100644 --- a/content/2.defense-systems/abir.md +++ b/content/2.defense-systems/abir.md @@ -33,8 +33,8 @@ A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect aga ::article-doi-list --- items: - - 10.1023/A:1002027321171 - - 10.1016/j.mib.2005.06.006 + - doi: 10.1023/A:1002027321171 + - doi: 10.1016/j.mib.2005.06.006 --- :: diff --git a/content/2.defense-systems/abit.md b/content/2.defense-systems/abit.md index 21815946..f5ed6e47 100644 --- a/content/2.defense-systems/abit.md +++ b/content/2.defense-systems/abit.md @@ -33,8 +33,8 @@ A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect aga ::article-doi-list --- items: - - 10.1023/A:1002027321171 - - 10.1016/j.mib.2005.06.006 + - doi: 10.1023/A:1002027321171 + - doi: 10.1016/j.mib.2005.06.006 --- :: diff --git a/content/2.defense-systems/abiu.md b/content/2.defense-systems/abiu.md index abf49437..3fe09695 100644 --- a/content/2.defense-systems/abiu.md +++ b/content/2.defense-systems/abiu.md @@ -33,8 +33,8 @@ A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect aga ::article-doi-list --- items: - - 10.1023/A:1002027321171 - - 10.1016/j.mib.2005.06.006 + - doi: 10.1023/A:1002027321171 + - doi: 10.1016/j.mib.2005.06.006 --- :: diff --git a/content/2.defense-systems/abiv.md b/content/2.defense-systems/abiv.md index 96f646c4..c9a67d7f 100644 --- a/content/2.defense-systems/abiv.md +++ b/content/2.defense-systems/abiv.md @@ -36,8 +36,8 @@ A system from *Lactococcus lactis* in *Lactococcus lactis* has an anti-phage eff ::article-doi-list --- items: - - 10.1023/A:1002027321171 - - 10.1128/AEM.00780-08 + - doi: 10.1023/A:1002027321171 + - doi: 10.1128/AEM.00780-08 --- :: diff --git a/content/2.defense-systems/abiz.md b/content/2.defense-systems/abiz.md index eaef6421..f82e3574 100644 --- a/content/2.defense-systems/abiz.md +++ b/content/2.defense-systems/abiz.md @@ -33,8 +33,8 @@ A system from *Lactococcus lactis* in *Lactococcus lactis* has an anti-phage eff ::article-doi-list --- items: - - 10.1023/A:1002027321171 - - 10.1128/JB.00904-06 + - doi: 10.1023/A:1002027321171 + - doi: 10.1128/JB.00904-06 --- :: diff --git a/content/2.defense-systems/aditi.md b/content/2.defense-systems/aditi.md index 84d983b3..090a5eb4 100644 --- a/content/2.defense-systems/aditi.md +++ b/content/2.defense-systems/aditi.md @@ -33,7 +33,7 @@ A system from *Saccharibacillus kuerlensis* in *Bacillus subtilis* has an anti-p ::article-doi-list --- items: - - 10.1016/j.chom.2022.09.017 + - doi: 10.1016/j.chom.2022.09.017 --- :: diff --git a/content/2.defense-systems/avast.md b/content/2.defense-systems/avast.md index d58bd1d4..2bc639dc 100644 --- a/content/2.defense-systems/avast.md +++ b/content/2.defense-systems/avast.md @@ -92,8 +92,8 @@ Subsystem CcAvs4 with a system from *Corallococcus coralloides* in *Escherichia ::article-doi-list --- items: - - 10.1126/science.aba0372 - - 10.1126/science.abm4096 + - doi: 10.1126/science.aba0372 + - doi: 10.1126/science.abm4096 --- :: diff --git a/content/2.defense-systems/azaca.md b/content/2.defense-systems/azaca.md index d50b48b1..bdf5238f 100644 --- a/content/2.defense-systems/azaca.md +++ b/content/2.defense-systems/azaca.md @@ -35,7 +35,7 @@ A system from *Bacillus massilioanorexius* in *Bacillus subtilis* has an anti-ph ::article-doi-list --- items: - - 10.1016/j.chom.2022.09.017 + - doi: 10.1016/j.chom.2022.09.017 --- :: diff --git a/content/2.defense-systems/borvo.md b/content/2.defense-systems/borvo.md index 93194660..25ac50d7 100644 --- a/content/2.defense-systems/borvo.md +++ b/content/2.defense-systems/borvo.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1016/j.chom.2022.09.017 + - doi: 10.1016/j.chom.2022.09.017 --- :: diff --git a/content/2.defense-systems/brex.md b/content/2.defense-systems/brex.md index 640c57d5..a8fa7fcf 100644 --- a/content/2.defense-systems/brex.md +++ b/content/2.defense-systems/brex.md @@ -62,9 +62,9 @@ A system from *Bacillus cereus* in *Bacillus subtilis* has an anti-phage effect ::article-doi-list --- items: - - 10.1093/nar/gkaa290 - - 10.1093/nar/gky1125 - - 10.15252/embj.201489455 + - doi: 10.1093/nar/gkaa290 + - doi: 10.1093/nar/gky1125 + - doi: 10.15252/embj.201489455 --- :: diff --git a/content/2.defense-systems/bsta.md b/content/2.defense-systems/bsta.md index 9e141e3a..bf04f9f6 100644 --- a/content/2.defense-systems/bsta.md +++ b/content/2.defense-systems/bsta.md @@ -51,7 +51,7 @@ A system from *Salmonella Typhimurium's BTP1* in *Escherichia coli* has an anti- ::article-doi-list --- items: - - 10.1016/j.chom.2021.09.002 + - doi: 10.1016/j.chom.2021.09.002 --- :: diff --git a/content/2.defense-systems/bunzi.md b/content/2.defense-systems/bunzi.md index 72c1f29f..6986429c 100644 --- a/content/2.defense-systems/bunzi.md +++ b/content/2.defense-systems/bunzi.md @@ -33,7 +33,7 @@ A system from *Ligilactobacillus animalis* in *Bacillus subtilis* has an anti-ph ::article-doi-list --- items: - - 10.1016/j.chom.2022.09.017 + - doi: 10.1016/j.chom.2022.09.017 --- :: diff --git a/content/2.defense-systems/caprel.md b/content/2.defense-systems/caprel.md index 5ee735c5..8c35327d 100644 --- a/content/2.defense-systems/caprel.md +++ b/content/2.defense-systems/caprel.md @@ -49,7 +49,7 @@ A system from *Klebsiella pneumoniae* in *Escherichia coli* has an anti-phage ef ::article-doi-list --- items: - - 10.1038/s41586-022-05444-z + - doi: 10.1038/s41586-022-05444-z --- :: diff --git a/content/2.defense-systems/cbass.md b/content/2.defense-systems/cbass.md index 6782bd6d..8d618835 100644 --- a/content/2.defense-systems/cbass.md +++ b/content/2.defense-systems/cbass.md @@ -51,11 +51,11 @@ A system from *Pseudomonas aeruginosa* in *Pseudomonas aeruginosa* has an anti-p ::article-doi-list --- items: - - 10.1016/j.molcel.2019.12.009 - - 10.1016/j.molcel.2021.10.020 - - 10.1038/s41564-020-0777-y - - 10.1038/s41586-019-1605-5 - - 10.1038/s41586-020-2719-5 + - doi: 10.1016/j.molcel.2019.12.009 + - doi: 10.1016/j.molcel.2021.10.020 + - doi: 10.1038/s41564-020-0777-y + - doi: 10.1038/s41586-019-1605-5 + - doi: 10.1038/s41586-020-2719-5 --- :: diff --git a/content/2.defense-systems/dartg.md b/content/2.defense-systems/dartg.md index 2a21019e..5b45549d 100644 --- a/content/2.defense-systems/dartg.md +++ b/content/2.defense-systems/dartg.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41564-022-01153-5 + - doi: 10.1038/s41564-022-01153-5 --- :: diff --git a/content/2.defense-systems/dazbog.md b/content/2.defense-systems/dazbog.md index d5919038..d76dbf5d 100644 --- a/content/2.defense-systems/dazbog.md +++ b/content/2.defense-systems/dazbog.md @@ -35,7 +35,7 @@ A system from *Bacillus cereus* in *Bacillus subtilis* has an anti-phage effect ::article-doi-list --- items: - - 10.1016/j.chom.2022.09.017 + - doi: 10.1016/j.chom.2022.09.017 --- :: diff --git a/content/2.defense-systems/dctpdeaminase.md b/content/2.defense-systems/dctpdeaminase.md index f9bdc9bd..cd52ecd7 100644 --- a/content/2.defense-systems/dctpdeaminase.md +++ b/content/2.defense-systems/dctpdeaminase.md @@ -51,8 +51,6 @@ Subsystem AvcID with a system from *Vibrio cholerae* in *Escherichia coli* has a ::article-doi-list --- items: - - 10.1038/s41564-022-01162-4 - - 10.1038/s41564-022-01162-4 - + - doi: 10.1038/s41564-022-01162-4 --- :: diff --git a/content/2.defense-systems/dgtpase.md b/content/2.defense-systems/dgtpase.md index c09e3ba0..66546b6a 100644 --- a/content/2.defense-systems/dgtpase.md +++ b/content/2.defense-systems/dgtpase.md @@ -41,7 +41,7 @@ A system from *Shewanella putrefaciens* in *Escherichia coli* has an anti-phage ::article-doi-list --- items: - - 10.1038/s41564-022-01162-4 + - doi: 10.1038/s41564-022-01162-4 --- :: diff --git a/content/2.defense-systems/disarm.md b/content/2.defense-systems/disarm.md index 153d6dde..7fe79294 100644 --- a/content/2.defense-systems/disarm.md +++ b/content/2.defense-systems/disarm.md @@ -57,8 +57,8 @@ A system from *Serratia sp. SCBI* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41467-022-30673-1 - - 10.1038/s41564-017-0051-0 + - doi: 10.1038/s41467-022-30673-1 + - doi: 10.1038/s41564-017-0051-0 --- :: diff --git a/content/2.defense-systems/dmdde.md b/content/2.defense-systems/dmdde.md index 32f25cee..e4b676e9 100644 --- a/content/2.defense-systems/dmdde.md +++ b/content/2.defense-systems/dmdde.md @@ -27,7 +27,7 @@ Among the 22k complete genomes of RefSeq, this system is present in 145 genomes ::article-doi-list --- items: - - 10.1038/s41586-022-04546-y + - doi: 10.1038/s41586-022-04546-y --- :: diff --git a/content/2.defense-systems/dnd.md b/content/2.defense-systems/dnd.md index 2464291e..9d7a139a 100644 --- a/content/2.defense-systems/dnd.md +++ b/content/2.defense-systems/dnd.md @@ -37,8 +37,8 @@ Subsystem DndCDEA-PbeABCD with a system from *Halalkalicoccus jeotgali* in *Natr ::article-doi-list --- items: - - 10.1038/nchembio.2007.39 - - 10.1038/s41467-019-09390-9 + - doi: 10.1038/nchembio.2007.39 + - doi: 10.1038/s41467-019-09390-9 --- :: diff --git a/content/2.defense-systems/dodola.md b/content/2.defense-systems/dodola.md index d229b67c..f6eb30da 100644 --- a/content/2.defense-systems/dodola.md +++ b/content/2.defense-systems/dodola.md @@ -33,7 +33,7 @@ A system from *Bacillus cereus* in *Bacillus subtilis* has an anti-phage effect ::article-doi-list --- items: - - 10.1016/j.chom.2022.09.017 + - doi: 10.1016/j.chom.2022.09.017 --- :: diff --git a/content/2.defense-systems/dpd.md b/content/2.defense-systems/dpd.md index 3bb832f2..cd598667 100644 --- a/content/2.defense-systems/dpd.md +++ b/content/2.defense-systems/dpd.md @@ -27,7 +27,7 @@ Among the 22k complete genomes of RefSeq, this system is present in 226 genomes ::article-doi-list --- items: - - 10.1073/pnas.1518570113 + - doi: 10.1073/pnas.1518570113 --- :: diff --git a/content/2.defense-systems/drt.md b/content/2.defense-systems/drt.md index 42c02922..4ca1ebb3 100644 --- a/content/2.defense-systems/drt.md +++ b/content/2.defense-systems/drt.md @@ -75,8 +75,8 @@ Subsystem RT (UG28) (Type 9) with a system from *Escherichia coli* in *Escherich ::article-doi-list --- items: - - 10.1093/nar/gkac467 - - 10.1126/science.aba0372 + - doi: 10.1093/nar/gkac467 + - doi: 10.1126/science.aba0372 --- :: diff --git a/content/2.defense-systems/druantia.md b/content/2.defense-systems/druantia.md index 38469580..901cc9d9 100644 --- a/content/2.defense-systems/druantia.md +++ b/content/2.defense-systems/druantia.md @@ -41,7 +41,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1126/science.aar4120 + - doi: 10.1126/science.aar4120 --- :: diff --git a/content/2.defense-systems/dsr.md b/content/2.defense-systems/dsr.md index c22a192b..b8294e7a 100644 --- a/content/2.defense-systems/dsr.md +++ b/content/2.defense-systems/dsr.md @@ -43,8 +43,8 @@ Subsystem DSR1 with a system from *Bacillus subtilis* in *Bacillus subtilis * ha ::article-doi-list --- items: - - 10.1038/s41564-022-01207-8 - - 10.1126/science.aba0372 + - doi: 10.1038/s41564-022-01207-8 + - doi: 10.1126/science.aba0372 --- :: diff --git a/content/2.defense-systems/eleos.md b/content/2.defense-systems/eleos.md index ab4a090c..c1664f0d 100644 --- a/content/2.defense-systems/eleos.md +++ b/content/2.defense-systems/eleos.md @@ -35,7 +35,7 @@ A system from *Bacillus vietnamensis* in *Bacillus subtilis* has an anti-phage e ::article-doi-list --- items: - - 10.1016/j.chom.2022.09.017 + - doi: 10.1016/j.chom.2022.09.017 --- :: diff --git a/content/2.defense-systems/gabija.md b/content/2.defense-systems/gabija.md index a17b54fb..ec4d44ee 100644 --- a/content/2.defense-systems/gabija.md +++ b/content/2.defense-systems/gabija.md @@ -47,8 +47,8 @@ A system from *Bacillus cereus* in *Escherichia coli* has an anti-phage effect a ::article-doi-list --- items: - - 10.1093/nar/gkab277 - - 10.1126/science.aar4120 + - doi: 10.1093/nar/gkab277 + - doi: 10.1126/science.aar4120 --- :: diff --git a/content/2.defense-systems/gao_ape.md b/content/2.defense-systems/gao_ape.md index 898c287e..41e8bec7 100644 --- a/content/2.defense-systems/gao_ape.md +++ b/content/2.defense-systems/gao_ape.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1126/science.aba0372 + - doi: 10.1126/science.aba0372 --- :: diff --git a/content/2.defense-systems/gao_her.md b/content/2.defense-systems/gao_her.md index d85d02c6..9c2c8906 100644 --- a/content/2.defense-systems/gao_her.md +++ b/content/2.defense-systems/gao_her.md @@ -39,7 +39,7 @@ Subsystem DUF4297 + HerA with a system from *Escherichia coli* in *Escherichia c ::article-doi-list --- items: - - 10.1126/science.aba0372 + - doi: 10.1126/science.aba0372 --- :: diff --git a/content/2.defense-systems/gao_hhe.md b/content/2.defense-systems/gao_hhe.md index 819461fe..5773083c 100644 --- a/content/2.defense-systems/gao_hhe.md +++ b/content/2.defense-systems/gao_hhe.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1126/science.aba0372 + - doi: 10.1126/science.aba0372 --- :: diff --git a/content/2.defense-systems/gao_iet.md b/content/2.defense-systems/gao_iet.md index 6c1b81a9..2fc12bc0 100644 --- a/content/2.defense-systems/gao_iet.md +++ b/content/2.defense-systems/gao_iet.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1126/science.aba0372 + - doi: 10.1126/science.aba0372 --- :: diff --git a/content/2.defense-systems/gao_mza.md b/content/2.defense-systems/gao_mza.md index c616426d..0bcc8a4b 100644 --- a/content/2.defense-systems/gao_mza.md +++ b/content/2.defense-systems/gao_mza.md @@ -33,7 +33,7 @@ A system from *Salmonella enterica* in *Escherichia coli* has an anti-phage effe ::article-doi-list --- items: - - 10.1126/science.aba0372 + - doi: 10.1126/science.aba0372 --- :: diff --git a/content/2.defense-systems/gao_ppl.md b/content/2.defense-systems/gao_ppl.md index e79e284e..a0751039 100644 --- a/content/2.defense-systems/gao_ppl.md +++ b/content/2.defense-systems/gao_ppl.md @@ -33,7 +33,7 @@ A system from *Salmonella enterica* in *Escherichia coli* has an anti-phage effe ::article-doi-list --- items: - - 10.1126/science.aba0372 + - doi: 10.1126/science.aba0372 --- :: diff --git a/content/2.defense-systems/gao_qat.md b/content/2.defense-systems/gao_qat.md index 91b89e32..e9633099 100644 --- a/content/2.defense-systems/gao_qat.md +++ b/content/2.defense-systems/gao_qat.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1126/science.aba0372 + - doi: 10.1126/science.aba0372 --- :: diff --git a/content/2.defense-systems/gao_rl.md b/content/2.defense-systems/gao_rl.md index 6de29d96..92ba172f 100644 --- a/content/2.defense-systems/gao_rl.md +++ b/content/2.defense-systems/gao_rl.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1126/science.aba0372 + - doi: 10.1126/science.aba0372 --- :: diff --git a/content/2.defense-systems/gao_tery.md b/content/2.defense-systems/gao_tery.md index bd5bc3c4..aea8b0c3 100644 --- a/content/2.defense-systems/gao_tery.md +++ b/content/2.defense-systems/gao_tery.md @@ -33,7 +33,7 @@ A system from *Citrobacter gillenii* in *Escherichia coli* has an anti-phage eff ::article-doi-list --- items: - - 10.1126/science.aba0372 + - doi: 10.1126/science.aba0372 --- :: diff --git a/content/2.defense-systems/gao_tmn.md b/content/2.defense-systems/gao_tmn.md index 37f11421..e0fe7c80 100644 --- a/content/2.defense-systems/gao_tmn.md +++ b/content/2.defense-systems/gao_tmn.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1126/science.aba0372 + - doi: 10.1126/science.aba0372 --- :: diff --git a/content/2.defense-systems/gao_upx.md b/content/2.defense-systems/gao_upx.md index 2bf2a707..ab9645b3 100644 --- a/content/2.defense-systems/gao_upx.md +++ b/content/2.defense-systems/gao_upx.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1126/science.aba0372 + - doi: 10.1126/science.aba0372 --- :: diff --git a/content/2.defense-systems/gasdermin.md b/content/2.defense-systems/gasdermin.md index af871940..38046e64 100644 --- a/content/2.defense-systems/gasdermin.md +++ b/content/2.defense-systems/gasdermin.md @@ -33,7 +33,7 @@ A system from *Lysobacter enzymogenes* in *Escherichia coli* has an anti-phage e ::article-doi-list --- items: - - 10.1126/science.abj8432 + - doi: 10.1126/science.abj8432 --- :: diff --git a/content/2.defense-systems/gp29_gp30.md b/content/2.defense-systems/gp29_gp30.md index 76d0b3f9..f75f51a2 100644 --- a/content/2.defense-systems/gp29_gp30.md +++ b/content/2.defense-systems/gp29_gp30.md @@ -27,7 +27,7 @@ Among the 22k complete genomes of RefSeq, this system is present in 314 genomes ::article-doi-list --- items: - - 10.1038/nmicrobiol.2016.251 + - doi: 10.1038/nmicrobiol.2016.251 --- :: diff --git a/content/2.defense-systems/hachiman.md b/content/2.defense-systems/hachiman.md index 82f056a2..79867502 100644 --- a/content/2.defense-systems/hachiman.md +++ b/content/2.defense-systems/hachiman.md @@ -41,7 +41,7 @@ Subsystem Hachiman Type II with a system from *Sphingopyxis witflariensis* in *E ::article-doi-list --- items: - - 10.1126/science.aar4120 + - doi: 10.1126/science.aar4120 --- :: diff --git a/content/2.defense-systems/isg15-like.md b/content/2.defense-systems/isg15-like.md index 2339fc1a..7d4789da 100644 --- a/content/2.defense-systems/isg15-like.md +++ b/content/2.defense-systems/isg15-like.md @@ -41,7 +41,7 @@ A system from *Thiomonas sp. FB-6* in *Escherichia coli* has an anti-phage effec ::article-doi-list --- items: - - 10.1016/j.chom.2022.09.017 + - doi: 10.1016/j.chom.2022.09.017 --- :: diff --git a/content/2.defense-systems/kiwa.md b/content/2.defense-systems/kiwa.md index 666f6d7f..6f77579d 100644 --- a/content/2.defense-systems/kiwa.md +++ b/content/2.defense-systems/kiwa.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1126/science.aar4120 + - doi: 10.1126/science.aar4120 --- :: diff --git a/content/2.defense-systems/lamassu-fam.md b/content/2.defense-systems/lamassu-fam.md index 0300d092..c7ef58ac 100644 --- a/content/2.defense-systems/lamassu-fam.md +++ b/content/2.defense-systems/lamassu-fam.md @@ -102,9 +102,9 @@ Subsystem DdmABC with a system from *Vibrio cholerae* in *Escherichia coli* has ::article-doi-list --- items: - - 10.1016/j.chom.2022.09.017 - - 10.1038/s41586-022-04546-y - - 10.1126/science.aar4120 + - doi: 10.1016/j.chom.2022.09.017 + - doi: 10.1038/s41586-022-04546-y + - doi: 10.1126/science.aar4120 --- :: diff --git a/content/2.defense-systems/lit.md b/content/2.defense-systems/lit.md index 4c83992b..d103914b 100644 --- a/content/2.defense-systems/lit.md +++ b/content/2.defense-systems/lit.md @@ -33,9 +33,9 @@ A system from *Escherichia coli defective prophage e14* in *Escherichia coli* ha ::article-doi-list --- items: - - 10.1073/pnas.91.2.802 - - 10.1074/jbc.M002546200 - - 10.1186/1743-422X-7-360 + - doi: 10.1073/pnas.91.2.802 + - doi: 10.1074/jbc.M002546200 + - doi: 10.1186/1743-422X-7-360 --- :: diff --git a/content/2.defense-systems/menshen.md b/content/2.defense-systems/menshen.md index 5e42cc10..e9041001 100644 --- a/content/2.defense-systems/menshen.md +++ b/content/2.defense-systems/menshen.md @@ -35,7 +35,7 @@ A system from *Solibacillus silvestris* in *Bacillus subtilis* has an anti-phage ::article-doi-list --- items: - - 10.1016/j.chom.2022.09.017 + - doi: 10.1016/j.chom.2022.09.017 --- :: diff --git a/content/2.defense-systems/mok_hok_sok.md b/content/2.defense-systems/mok_hok_sok.md index f2252462..b87ea0cb 100644 --- a/content/2.defense-systems/mok_hok_sok.md +++ b/content/2.defense-systems/mok_hok_sok.md @@ -33,7 +33,7 @@ A system from *R1 plasmid of Salmonella paratyphi* in *Escherichia coli* has an ::article-doi-list --- items: - - 10.1128/jb.178.7.2044-2050.1996 + - doi: 10.1128/jb.178.7.2044-2050.1996 --- :: diff --git a/content/2.defense-systems/mokosh.md b/content/2.defense-systems/mokosh.md index f12dee44..7fc1a69c 100644 --- a/content/2.defense-systems/mokosh.md +++ b/content/2.defense-systems/mokosh.md @@ -39,7 +39,7 @@ Subsystem Type II with a system from *Escherichia coli* in *Escherichia coli* ha ::article-doi-list --- items: - - 10.1016/j.chom.2022.09.017 + - doi: 10.1016/j.chom.2022.09.017 --- :: diff --git a/content/2.defense-systems/nhi.md b/content/2.defense-systems/nhi.md index ba9bb8bd..884324a8 100644 --- a/content/2.defense-systems/nhi.md +++ b/content/2.defense-systems/nhi.md @@ -41,7 +41,7 @@ A system from *Vibrio vulnificus* in *Staphylococcus aureus* has an anti-phage e ::article-doi-list --- items: - - 10.1016/j.chom.2022.03.001 + - doi: 10.1016/j.chom.2022.03.001 --- :: diff --git a/content/2.defense-systems/nixi.md b/content/2.defense-systems/nixi.md index c3278deb..a8b8e6db 100644 --- a/content/2.defense-systems/nixi.md +++ b/content/2.defense-systems/nixi.md @@ -33,7 +33,7 @@ A system from *Vibrio cholerae* in *Vibrio cholerae* has an anti-phage effect ag ::article-doi-list --- items: - - 10.1101/2021.07.12.452122 + - doi: 10.1101/2021.07.12.452122 --- :: diff --git a/content/2.defense-systems/nlr.md b/content/2.defense-systems/nlr.md index 65863ccd..b3102c93 100644 --- a/content/2.defense-systems/nlr.md +++ b/content/2.defense-systems/nlr.md @@ -53,7 +53,7 @@ Subsystem bNACHT09 with a system from *Escherichia coli* in *Escherichia coli* h ::article-doi-list --- items: - - 10.1101/2022.07.19.500537 + - doi: 10.1101/2022.07.19.500537 --- :: diff --git a/content/2.defense-systems/old/abia.md b/content/2.defense-systems/old/abia.md index ea5fc81f..c56ceafe 100644 --- a/content/2.defense-systems/old/abia.md +++ b/content/2.defense-systems/old/abia.md @@ -36,13 +36,13 @@ A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect aga ::article-doi-list --- items: - - 10.1016/j.mib.2005.06.006 - - 10.1023/A:1002027321171 - - 10.1093/nar/gkac467 + - doi: 10.1016/j.mib.2005.06.006 + - doi: 10.1023/A:1002027321171 + - doi: 10.1093/nar/gkac467 --- :: -<!-- 10.1016/j.mib.2005.06.006 --> +<!-- doi: 10.1016/j.mib.2005.06.006 --> **Chopin, M.-C., Chopin, A. & Bidnenko, E. Phage abortive infection in lactococci: variations on a theme. Curr Opin Microbiol 8, 473-479 (2005).** Abortive infection (Abi) systems, also called phage exclusion, block phage multiplication and cause premature bacterial cell death upon phage infection. This decreases the number of progeny particles and limits their spread to other cells allowing the bacterial population to survive. Twenty Abi systems have been isolated in Lactococcus lactis, a bacterium used in cheese-making fermentation processes, where phage attacks are of economical importance. Recent insights in their expression and mode of action indicate that, behind diverse phenotypic and molecular effects, lactococcal Abis share common traits with the well-studied Escherichia coli systems Lit and Prr. Abis are widespread in bacteria, and recent analysis indicates that Abis might have additional roles other than conferring phage resistance. diff --git a/content/2.defense-systems/old/avast.md b/content/2.defense-systems/old/avast.md index 7909a710..ee472b14 100644 --- a/content/2.defense-systems/old/avast.md +++ b/content/2.defense-systems/old/avast.md @@ -97,7 +97,7 @@ Subsystem CcAvs4 with a system from *Corallococcus coralloides* in *Escherichia ::article-doi-list --- items: - - 10.1126/science.abm4096 - - 10.1126/science.aba0372 + - doi: 10.1126/science.abm4096 + - doi: 10.1126/science.aba0372 --- :: \ No newline at end of file diff --git a/content/2.defense-systems/old/paris.md b/content/2.defense-systems/old/paris.md index 7f57f047..eb31bf0e 100644 --- a/content/2.defense-systems/old/paris.md +++ b/content/2.defense-systems/old/paris.md @@ -53,8 +53,8 @@ Paris type II merge system in _Desulfovibrio desulfuricans_ (GCF\__000025705.1). ::article-doi-list --- items: - - 10.1101/2021.01.21.427644 - - 10.1093/nar/gkaa290 - - 10.1016/0022-2836(75)90083-2 + - doi: 10.1101/2021.01.21.427644 + - doi: 10.1093/nar/gkaa290 + - doi: 10.1016/0022-2836(75)90083-2 --- :: \ No newline at end of file diff --git a/content/2.defense-systems/olokun.md b/content/2.defense-systems/olokun.md index 5666fa4f..4a8cd69a 100644 --- a/content/2.defense-systems/olokun.md +++ b/content/2.defense-systems/olokun.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1016/j.chom.2022.09.017 + - doi: 10.1016/j.chom.2022.09.017 --- :: diff --git a/content/2.defense-systems/pago.md b/content/2.defense-systems/pago.md index d8f63877..fde9b123 100644 --- a/content/2.defense-systems/pago.md +++ b/content/2.defense-systems/pago.md @@ -49,12 +49,12 @@ Subsystem SiAgo/Aga1/Aga2 with a system from *Sulfolobus islandicus* in *Sulfolo ::article-doi-list --- items: - - 10.1016/j.cell.2022.03.012 - - 10.1016/j.chom.2022.04.015 - - 10.1038/s41564-022-01207-8 - - 10.1038/s41586-020-2605-1 - - 10.1186/1745-6150-4-29 - - 10.1038/s41564-022-01239-0 + - doi: 10.1016/j.cell.2022.03.012 + - doi: 10.1016/j.chom.2022.04.015 + - doi: 10.1038/s41564-022-01207-8 + - doi: 10.1038/s41586-020-2605-1 + - doi: 10.1186/1745-6150-4-29 + - doi: 10.1038/s41564-022-01239-0 --- :: diff --git a/content/2.defense-systems/pd-lambda-1.md b/content/2.defense-systems/pd-lambda-1.md index 571ee3d7..db4f0937 100644 --- a/content/2.defense-systems/pd-lambda-1.md +++ b/content/2.defense-systems/pd-lambda-1.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41564-022-01219-4 + - doi: 10.1038/s41564-022-01219-4 --- :: diff --git a/content/2.defense-systems/pd-lambda-2.md b/content/2.defense-systems/pd-lambda-2.md index bc411f66..a8316a74 100644 --- a/content/2.defense-systems/pd-lambda-2.md +++ b/content/2.defense-systems/pd-lambda-2.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41564-022-01219-4 + - doi: 10.1038/s41564-022-01219-4 --- :: diff --git a/content/2.defense-systems/pd-lambda-3.md b/content/2.defense-systems/pd-lambda-3.md index d0f21b11..191f15c6 100644 --- a/content/2.defense-systems/pd-lambda-3.md +++ b/content/2.defense-systems/pd-lambda-3.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41564-022-01219-4 + - doi: 10.1038/s41564-022-01219-4 --- :: diff --git a/content/2.defense-systems/pd-lambda-4.md b/content/2.defense-systems/pd-lambda-4.md index bbcbacb4..c05e95f7 100644 --- a/content/2.defense-systems/pd-lambda-4.md +++ b/content/2.defense-systems/pd-lambda-4.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41564-022-01219-4 + - doi: 10.1038/s41564-022-01219-4 --- :: diff --git a/content/2.defense-systems/pd-lambda-5.md b/content/2.defense-systems/pd-lambda-5.md index d6b65249..949f461b 100644 --- a/content/2.defense-systems/pd-lambda-5.md +++ b/content/2.defense-systems/pd-lambda-5.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41564-022-01219-4 + - doi: 10.1038/s41564-022-01219-4 --- :: diff --git a/content/2.defense-systems/pd-lambda-6.md b/content/2.defense-systems/pd-lambda-6.md index 4a1236ed..1c4c2272 100644 --- a/content/2.defense-systems/pd-lambda-6.md +++ b/content/2.defense-systems/pd-lambda-6.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41564-022-01219-4 + - doi: 10.1038/s41564-022-01219-4 --- :: diff --git a/content/2.defense-systems/pd-t4-1.md b/content/2.defense-systems/pd-t4-1.md index 0763a2cf..bf38ceee 100644 --- a/content/2.defense-systems/pd-t4-1.md +++ b/content/2.defense-systems/pd-t4-1.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1371/journal.pgen.1010065 + - doi: 10.1371/journal.pgen.1010065 --- :: diff --git a/content/2.defense-systems/pd-t4-10.md b/content/2.defense-systems/pd-t4-10.md index f0a38fec..cf7a258f 100644 --- a/content/2.defense-systems/pd-t4-10.md +++ b/content/2.defense-systems/pd-t4-10.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1371/journal.pgen.1010065 + - doi: 10.1371/journal.pgen.1010065 --- :: diff --git a/content/2.defense-systems/pd-t4-2.md b/content/2.defense-systems/pd-t4-2.md index 52d9c9cc..8a17374e 100644 --- a/content/2.defense-systems/pd-t4-2.md +++ b/content/2.defense-systems/pd-t4-2.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41564-022-01219-4 + - doi: 10.1038/s41564-022-01219-4 --- :: diff --git a/content/2.defense-systems/pd-t4-3.md b/content/2.defense-systems/pd-t4-3.md index 2960a39e..9339d524 100644 --- a/content/2.defense-systems/pd-t4-3.md +++ b/content/2.defense-systems/pd-t4-3.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41564-022-01219-4 + - doi: 10.1038/s41564-022-01219-4 --- :: diff --git a/content/2.defense-systems/pd-t4-4.md b/content/2.defense-systems/pd-t4-4.md index 72f7e982..bb8ccc81 100644 --- a/content/2.defense-systems/pd-t4-4.md +++ b/content/2.defense-systems/pd-t4-4.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41564-022-01219-4 + - doi: 10.1038/s41564-022-01219-4 --- :: diff --git a/content/2.defense-systems/pd-t4-5.md b/content/2.defense-systems/pd-t4-5.md index 7850e3fa..99a12913 100644 --- a/content/2.defense-systems/pd-t4-5.md +++ b/content/2.defense-systems/pd-t4-5.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41564-022-01219-4 + - doi: 10.1038/s41564-022-01219-4 --- :: diff --git a/content/2.defense-systems/pd-t4-6.md b/content/2.defense-systems/pd-t4-6.md index 11eb6d31..5091f597 100644 --- a/content/2.defense-systems/pd-t4-6.md +++ b/content/2.defense-systems/pd-t4-6.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41564-022-01219-4 + - doi: 10.1038/s41564-022-01219-4 --- :: diff --git a/content/2.defense-systems/pd-t4-7.md b/content/2.defense-systems/pd-t4-7.md index 4a83401a..93829d78 100644 --- a/content/2.defense-systems/pd-t4-7.md +++ b/content/2.defense-systems/pd-t4-7.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41564-022-01219-4 + - doi: 10.1038/s41564-022-01219-4 --- :: diff --git a/content/2.defense-systems/pd-t4-8.md b/content/2.defense-systems/pd-t4-8.md index a6506dbb..6fbc3400 100644 --- a/content/2.defense-systems/pd-t4-8.md +++ b/content/2.defense-systems/pd-t4-8.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41564-022-01219-4 + - doi: 10.1038/s41564-022-01219-4 --- :: diff --git a/content/2.defense-systems/pd-t4-9.md b/content/2.defense-systems/pd-t4-9.md index aa720c31..fe9b8f66 100644 --- a/content/2.defense-systems/pd-t4-9.md +++ b/content/2.defense-systems/pd-t4-9.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41564-022-01219-4 + - doi: 10.1038/s41564-022-01219-4 --- :: diff --git a/content/2.defense-systems/pd-t7-1.md b/content/2.defense-systems/pd-t7-1.md index e57a9d3d..cbb34acf 100644 --- a/content/2.defense-systems/pd-t7-1.md +++ b/content/2.defense-systems/pd-t7-1.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41564-022-01219-4 + - doi: 10.1038/s41564-022-01219-4 --- :: diff --git a/content/2.defense-systems/pd-t7-2.md b/content/2.defense-systems/pd-t7-2.md index dba107ac..4027829e 100644 --- a/content/2.defense-systems/pd-t7-2.md +++ b/content/2.defense-systems/pd-t7-2.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41564-022-01219-4 + - doi: 10.1038/s41564-022-01219-4 --- :: diff --git a/content/2.defense-systems/pd-t7-3.md b/content/2.defense-systems/pd-t7-3.md index f09d0871..7ff84cc3 100644 --- a/content/2.defense-systems/pd-t7-3.md +++ b/content/2.defense-systems/pd-t7-3.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41564-022-01219-4 + - doi: 10.1038/s41564-022-01219-4 --- :: diff --git a/content/2.defense-systems/pd-t7-4.md b/content/2.defense-systems/pd-t7-4.md index 6f9e4da3..d817d2d4 100644 --- a/content/2.defense-systems/pd-t7-4.md +++ b/content/2.defense-systems/pd-t7-4.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41564-022-01219-4 + - doi: 10.1038/s41564-022-01219-4 --- :: diff --git a/content/2.defense-systems/pd-t7-5.md b/content/2.defense-systems/pd-t7-5.md index 376998c0..28277c7e 100644 --- a/content/2.defense-systems/pd-t7-5.md +++ b/content/2.defense-systems/pd-t7-5.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1038/s41564-022-01219-4 + - doi: 10.1038/s41564-022-01219-4 --- :: diff --git a/content/2.defense-systems/pfiat.md b/content/2.defense-systems/pfiat.md index 9968f6e4..f9911b0a 100644 --- a/content/2.defense-systems/pfiat.md +++ b/content/2.defense-systems/pfiat.md @@ -27,7 +27,7 @@ Among the 22k complete genomes of RefSeq, this system is present in 819 genomes ::article-doi-list --- items: - - 10.1111/1751-7915.13570 + - doi: 10.1111/1751-7915.13570 --- :: diff --git a/content/2.defense-systems/pif.md b/content/2.defense-systems/pif.md index 81f9d1e6..ac07e1a2 100644 --- a/content/2.defense-systems/pif.md +++ b/content/2.defense-systems/pif.md @@ -33,9 +33,9 @@ A system from *Escherichia coli F-plasmid* in *Escherichia coli* has an anti-pha ::article-doi-list --- items: - - 10.1007/BF00327934 - - 10.1016/j.virol.2004.06.001 - - 10.1128/jb.173.20.6507-6514.1991 + - doi: 10.1007/BF00327934 + - doi: 10.1016/j.virol.2004.06.001 + - doi: 10.1128/jb.173.20.6507-6514.1991 --- :: diff --git a/content/2.defense-systems/prrc.md b/content/2.defense-systems/prrc.md index 83846dcf..a83866c3 100644 --- a/content/2.defense-systems/prrc.md +++ b/content/2.defense-systems/prrc.md @@ -33,8 +33,8 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1006/jmbi.1995.0343 - - 10.1186/1743-422X-7-360 + - doi: 10.1006/jmbi.1995.0343 + - doi: 10.1186/1743-422X-7-360 --- :: diff --git a/content/2.defense-systems/psyrta.md b/content/2.defense-systems/psyrta.md index 1d8a6429..e1d7ae9f 100644 --- a/content/2.defense-systems/psyrta.md +++ b/content/2.defense-systems/psyrta.md @@ -33,8 +33,8 @@ A system from *Bacillus sp. FJAT-29814* in *Escherichia coli* has an anti-phage ::article-doi-list --- items: - - 10.1016/j.chom.2022.09.017 - - 10.1016/j.molcel.2013.02.002 + - doi: 10.1016/j.chom.2022.09.017 + - doi: 10.1016/j.molcel.2013.02.002 --- :: diff --git a/content/2.defense-systems/pycsar.md b/content/2.defense-systems/pycsar.md index 29f61ad8..a8b5ef7a 100644 --- a/content/2.defense-systems/pycsar.md +++ b/content/2.defense-systems/pycsar.md @@ -35,7 +35,7 @@ A system from *Xanthomonas perforans* in *Escherichia coli* has an anti-phage ef ::article-doi-list --- items: - - 10.1016/j.cell.2021.09.031 + - doi: 10.1016/j.cell.2021.09.031 --- :: diff --git a/content/2.defense-systems/radar.md b/content/2.defense-systems/radar.md index 49a4645c..aaf9a41d 100644 --- a/content/2.defense-systems/radar.md +++ b/content/2.defense-systems/radar.md @@ -50,7 +50,7 @@ A system from *Streptococcus suis* in *Escherichia coli* has an anti-phage effec ::article-doi-list --- items: - - 10.1126/science.aba0372 + - doi: 10.1126/science.aba0372 --- :: diff --git a/content/2.defense-systems/retron.md b/content/2.defense-systems/retron.md index e53f9f4f..ac65d092 100644 --- a/content/2.defense-systems/retron.md +++ b/content/2.defense-systems/retron.md @@ -135,8 +135,8 @@ Subsystem Retron-Eco1 with a system from *Escherichia coli* in *Escherichia coli ::article-doi-list --- items: - - 10.1016/j.cell.2020.09.065 - - 10.1093/nar/gkaa1149 + - doi: 10.1016/j.cell.2020.09.065 + - doi: 10.1093/nar/gkaa1149 --- :: diff --git a/content/2.defense-systems/rexab.md b/content/2.defense-systems/rexab.md index 5108628d..bad9e075 100644 --- a/content/2.defense-systems/rexab.md +++ b/content/2.defense-systems/rexab.md @@ -33,7 +33,7 @@ A system from *Escherichia coli lambda prophage* in *Escherichia coli* has an an ::article-doi-list --- items: - - 10.1101/gad.6.3.497 + - doi: 10.1101/gad.6.3.497 --- :: diff --git a/content/2.defense-systems/rloc.md b/content/2.defense-systems/rloc.md index 2f548f12..07f8cf12 100644 --- a/content/2.defense-systems/rloc.md +++ b/content/2.defense-systems/rloc.md @@ -33,8 +33,8 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1111/j.1365-2958.2008.06387.x - - 10.1111/mmi.13074 + - doi: 10.1111/j.1365-2958.2008.06387.x + - doi: 10.1111/mmi.13074 --- :: diff --git a/content/2.defense-systems/rm.md b/content/2.defense-systems/rm.md index 9e7048f3..159025d8 100644 --- a/content/2.defense-systems/rm.md +++ b/content/2.defense-systems/rm.md @@ -43,7 +43,7 @@ Among the 22k complete genomes of RefSeq, this system is present in 19087 genome ::article-doi-list --- items: - - 10.1093/nar/gku734 + - doi: 10.1093/nar/gku734 --- :: diff --git a/content/2.defense-systems/rnlab.md b/content/2.defense-systems/rnlab.md index 81b1932f..fd84aa59 100644 --- a/content/2.defense-systems/rnlab.md +++ b/content/2.defense-systems/rnlab.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1534/genetics.110.121798 + - doi: 10.1534/genetics.110.121798 --- :: diff --git a/content/2.defense-systems/rosmerta.md b/content/2.defense-systems/rosmerta.md index 1b0be240..24b72698 100644 --- a/content/2.defense-systems/rosmerta.md +++ b/content/2.defense-systems/rosmerta.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1016/j.chom.2022.09.017 + - doi: 10.1016/j.chom.2022.09.017 --- :: diff --git a/content/2.defense-systems/rst_2tm_1tm_tir.md b/content/2.defense-systems/rst_2tm_1tm_tir.md index 2be6806a..3ada54e8 100644 --- a/content/2.defense-systems/rst_2tm_1tm_tir.md +++ b/content/2.defense-systems/rst_2tm_1tm_tir.md @@ -27,7 +27,7 @@ Among the 22k complete genomes of RefSeq, this system is present in 2 genomes (0 ::article-doi-list --- items: - - 10.1016/j.chom.2022.02.018 + - doi: 10.1016/j.chom.2022.02.018 --- :: diff --git a/content/2.defense-systems/rst_3hp.md b/content/2.defense-systems/rst_3hp.md index 404fd300..3e5012ef 100644 --- a/content/2.defense-systems/rst_3hp.md +++ b/content/2.defense-systems/rst_3hp.md @@ -33,7 +33,7 @@ A system from *Escherichia coli (P2 loci)* in *Escherichia coli* has an anti-pha ::article-doi-list --- items: - - 10.1016/j.chom.2022.02.018 + - doi: 10.1016/j.chom.2022.02.018 --- :: diff --git a/content/2.defense-systems/rst_duf4238.md b/content/2.defense-systems/rst_duf4238.md index be8653a6..5c2b0f60 100644 --- a/content/2.defense-systems/rst_duf4238.md +++ b/content/2.defense-systems/rst_duf4238.md @@ -33,7 +33,7 @@ A system from *Escherichia coli (P2 loci)* in *Escherichia coli* has an anti-pha ::article-doi-list --- items: - - 10.1016/j.chom.2022.02.018 + - doi: 10.1016/j.chom.2022.02.018 --- :: diff --git a/content/2.defense-systems/rst_gop_beta_cll.md b/content/2.defense-systems/rst_gop_beta_cll.md index 932d4678..51ca9ffc 100644 --- a/content/2.defense-systems/rst_gop_beta_cll.md +++ b/content/2.defense-systems/rst_gop_beta_cll.md @@ -33,7 +33,7 @@ A system from *Enterobacteria phage P4* in *Escherichia coli* has an anti-phage ::article-doi-list --- items: - - 10.1016/j.chom.2022.02.018 + - doi: 10.1016/j.chom.2022.02.018 --- :: diff --git a/content/2.defense-systems/rst_helicaseduf2290.md b/content/2.defense-systems/rst_helicaseduf2290.md index 4221da9a..e813be90 100644 --- a/content/2.defense-systems/rst_helicaseduf2290.md +++ b/content/2.defense-systems/rst_helicaseduf2290.md @@ -33,7 +33,7 @@ A system from *Klebsiella pneumoniae (P4 loci)* in *Escherichia coli* has an ant ::article-doi-list --- items: - - 10.1016/j.chom.2022.02.018 + - doi: 10.1016/j.chom.2022.02.018 --- :: diff --git a/content/2.defense-systems/rst_hydrolase-3tm.md b/content/2.defense-systems/rst_hydrolase-3tm.md index afa9c352..a423c687 100644 --- a/content/2.defense-systems/rst_hydrolase-3tm.md +++ b/content/2.defense-systems/rst_hydrolase-3tm.md @@ -33,7 +33,7 @@ A system from *Escherichia coli (P4 loci)* in *Escherichia coli* has an anti-pha ::article-doi-list --- items: - - 10.1016/j.chom.2022.02.018 + - doi: 10.1016/j.chom.2022.02.018 --- :: diff --git a/content/2.defense-systems/rst_rt-nitrilase-tm.md b/content/2.defense-systems/rst_rt-nitrilase-tm.md index b27dcfc9..13a70ef0 100644 --- a/content/2.defense-systems/rst_rt-nitrilase-tm.md +++ b/content/2.defense-systems/rst_rt-nitrilase-tm.md @@ -33,7 +33,7 @@ A system from *Escherichia coli (P4 loci)* in *Escherichia coli* has an anti-pha ::article-doi-list --- items: - - 10.1016/j.chom.2022.02.018 + - doi: 10.1016/j.chom.2022.02.018 --- :: diff --git a/content/2.defense-systems/rst_tir-nlr.md b/content/2.defense-systems/rst_tir-nlr.md index 7a9c01aa..4cae46e9 100644 --- a/content/2.defense-systems/rst_tir-nlr.md +++ b/content/2.defense-systems/rst_tir-nlr.md @@ -33,7 +33,7 @@ A system from *Klebsiella pneumoniae (P4 loci)* in *Escherichia coli* has an ant ::article-doi-list --- items: - - 10.1016/j.chom.2022.02.018 + - doi: 10.1016/j.chom.2022.02.018 --- :: diff --git a/content/2.defense-systems/sanata.md b/content/2.defense-systems/sanata.md index 0c1c6299..50554264 100644 --- a/content/2.defense-systems/sanata.md +++ b/content/2.defense-systems/sanata.md @@ -33,7 +33,7 @@ A system from *Shewanella sp. ANA-3* in *Escherichia coli* has an anti-phage eff ::article-doi-list --- items: - - 10.1016/j.molcel.2013.02.002 + - doi: 10.1016/j.molcel.2013.02.002 --- :: diff --git a/content/2.defense-systems/sefir.md b/content/2.defense-systems/sefir.md index cb4d0835..e3b290bd 100644 --- a/content/2.defense-systems/sefir.md +++ b/content/2.defense-systems/sefir.md @@ -41,7 +41,7 @@ A system from *Bacillus sp. NIO-1130* in *Bacillus subtilis* has an anti-phage e ::article-doi-list --- items: - - 10.1016/j.chom.2022.09.017 + - doi: 10.1016/j.chom.2022.09.017 --- :: diff --git a/content/2.defense-systems/septu.md b/content/2.defense-systems/septu.md index 5706ef47..1d673539 100644 --- a/content/2.defense-systems/septu.md +++ b/content/2.defense-systems/septu.md @@ -35,9 +35,9 @@ A system from *Bacillus weihenstephanensis* in *Bacillus subtilis* has an anti-p ::article-doi-list --- items: - - 10.1016/j.cell.2020.09.065 - - 10.1093/nar/gkab883 - - 10.1126/science.aar4120 + - doi: 10.1016/j.cell.2020.09.065 + - doi: 10.1093/nar/gkab883 + - doi: 10.1126/science.aar4120 --- :: diff --git a/content/2.defense-systems/shango.md b/content/2.defense-systems/shango.md index 9d3bb40d..b9c024ca 100644 --- a/content/2.defense-systems/shango.md +++ b/content/2.defense-systems/shango.md @@ -44,7 +44,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1016/j.chom.2022.09.017 + - doi: 10.1016/j.chom.2022.09.017 --- :: diff --git a/content/2.defense-systems/shedu.md b/content/2.defense-systems/shedu.md index 2fedf255..769bd62e 100644 --- a/content/2.defense-systems/shedu.md +++ b/content/2.defense-systems/shedu.md @@ -33,7 +33,7 @@ A system from *Bacillus cereus* in *Bacillus subtilis* has an anti-phage effect ::article-doi-list --- items: - - 10.1126/science.aar4120 + - doi: 10.1126/science.aar4120 --- :: diff --git a/content/2.defense-systems/shosta.md b/content/2.defense-systems/shosta.md index cb953d0f..7737d1fe 100644 --- a/content/2.defense-systems/shosta.md +++ b/content/2.defense-systems/shosta.md @@ -35,9 +35,9 @@ A system from *Escherichia coli (P2 loci)* in *Escherichia coli* has an anti-pha ::article-doi-list --- items: - - 10.1016/j.chom.2022.09.017 - - 10.1016/j.chom.2022.09.017 - - 10.1101/gr.133850.111 + - doi: 10.1016/j.chom.2022.09.017 + - doi: 10.1016/j.chom.2022.09.017 + - doi: 10.1101/gr.133850.111 --- :: diff --git a/content/2.defense-systems/sofic.md b/content/2.defense-systems/sofic.md index 44a42d38..45910a14 100644 --- a/content/2.defense-systems/sofic.md +++ b/content/2.defense-systems/sofic.md @@ -33,7 +33,7 @@ A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect ::article-doi-list --- items: - - 10.1016/j.chom.2022.09.017 + - doi: 10.1016/j.chom.2022.09.017 --- :: diff --git a/content/2.defense-systems/spbk.md b/content/2.defense-systems/spbk.md index 997540c7..5be0b147 100644 --- a/content/2.defense-systems/spbk.md +++ b/content/2.defense-systems/spbk.md @@ -33,7 +33,7 @@ A system from *Bacillus subtilis* in *Bacillus subtilis* has an anti-phage effec ::article-doi-list --- items: - - 10.1371/journal.pgen.1010065 + - doi: 10.1371/journal.pgen.1010065 --- :: diff --git a/content/2.defense-systems/sspbcde.md b/content/2.defense-systems/sspbcde.md index 9fa2782b..f8e7de76 100644 --- a/content/2.defense-systems/sspbcde.md +++ b/content/2.defense-systems/sspbcde.md @@ -39,8 +39,8 @@ Subsystem SspBCD+SspFGH with a system from *Vibrio anguillarum* in *Escherichia ::article-doi-list --- items: - - 10.1128/mBio.00613-21 - - 10.1128/mBio.00613-21 + - doi: 10.1128/mBio.00613-21 + - doi: 10.1128/mBio.00613-21 --- :: diff --git a/content/2.defense-systems/stk2.md b/content/2.defense-systems/stk2.md index 0ed290d7..a01db5db 100644 --- a/content/2.defense-systems/stk2.md +++ b/content/2.defense-systems/stk2.md @@ -44,7 +44,7 @@ A system from *Staphylococcus epidermidis* in *Staphylococcus aureus* has an ant ::article-doi-list --- items: - - 10.1016/j.chom.2016.08.010 + - doi: 10.1016/j.chom.2016.08.010 --- :: diff --git a/content/2.defense-systems/thoeris.md b/content/2.defense-systems/thoeris.md index fb25d6a7..f43c233e 100644 --- a/content/2.defense-systems/thoeris.md +++ b/content/2.defense-systems/thoeris.md @@ -41,8 +41,8 @@ A system from *Bacillus dafuensis* in *Bacillus subtilis* has an anti-phage effe ::article-doi-list --- items: - - 10.1038/s41586-021-04098-7 - - 10.1126/science.aar4120 + - doi: 10.1038/s41586-021-04098-7 + - doi: 10.1126/science.aar4120 --- :: diff --git a/content/2.defense-systems/tiamat.md b/content/2.defense-systems/tiamat.md index 4056a7e0..f23636a9 100644 --- a/content/2.defense-systems/tiamat.md +++ b/content/2.defense-systems/tiamat.md @@ -33,7 +33,7 @@ A system from *Bacillus cereus* in *Escherichia coli* has an anti-phage effect a ::article-doi-list --- items: - - 10.1016/j.chom.2022.09.017 + - doi: 10.1016/j.chom.2022.09.017 --- :: diff --git a/content/2.defense-systems/uzume.md b/content/2.defense-systems/uzume.md index 14396e88..d2c63541 100644 --- a/content/2.defense-systems/uzume.md +++ b/content/2.defense-systems/uzume.md @@ -33,7 +33,7 @@ A system from *Bacillus sp. FJAT-27231* in *Bacillus subtilis* has an anti-phage ::article-doi-list --- items: - - 10.1016/j.chom.2022.09.017 + - doi: 10.1016/j.chom.2022.09.017 --- :: diff --git a/content/2.defense-systems/viperin.md b/content/2.defense-systems/viperin.md index 441f1427..d0cd5e2b 100644 --- a/content/2.defense-systems/viperin.md +++ b/content/2.defense-systems/viperin.md @@ -84,7 +84,7 @@ Subsystem pVip63 with a system from *Pseudoalteromonas sp. XI10* in *Escherichia ::article-doi-list --- items: - - 10.1038/s41586-020-2762-2 + - doi: 10.1038/s41586-020-2762-2 --- :: diff --git a/content/2.defense-systems/wadjet.md b/content/2.defense-systems/wadjet.md index 14e56e67..024f7a9c 100644 --- a/content/2.defense-systems/wadjet.md +++ b/content/2.defense-systems/wadjet.md @@ -35,7 +35,7 @@ Among the 22k complete genomes of RefSeq, this system is present in 2380 genomes ::article-doi-list --- items: - - 10.1126/science.aar4120 + - doi: 10.1126/science.aar4120 --- :: diff --git a/content/2.defense-systems/zorya.md b/content/2.defense-systems/zorya.md index 80cb000a..28c37942 100644 --- a/content/2.defense-systems/zorya.md +++ b/content/2.defense-systems/zorya.md @@ -41,8 +41,8 @@ Subsystem Type III with a system from *Stenotrophomonas nitritireducens* in *Esc ::article-doi-list --- items: - - 10.1093/nar/gkab883 - - 10.1126/science.aar4120 + - doi: 10.1093/nar/gkab883 + - doi: 10.1126/science.aar4120 --- :: -- GitLab