From 2524498fe003e2696925b04a595d03653a0c8a60 Mon Sep 17 00:00:00 2001
From: ftesson <florian.tesson@pasteur.fr>
Date: Tue, 9 Jan 2024 15:40:28 +0100
Subject: [PATCH] go back to previous fs_sma name
---
content/3.defense-systems/{sma.md => fs_sma.md} | 17 ++++++-----------
.../Distribution_FS_Sma.svg} | 0
public/{sma/sma.svg => fs_sma/FS_Sma.svg} | 0
.../FS_Sma__Sma-plddts_94.14969.pdb} | 0
4 files changed, 6 insertions(+), 11 deletions(-)
rename content/3.defense-systems/{sma.md => fs_sma.md} (94%)
rename public/{sma/Distribution_sma.svg => fs_sma/Distribution_FS_Sma.svg} (100%)
rename public/{sma/sma.svg => fs_sma/FS_Sma.svg} (100%)
rename public/{sma/sma__Sma-plddts_94.14969.pdb => fs_sma/FS_Sma__Sma-plddts_94.14969.pdb} (100%)
diff --git a/content/3.defense-systems/sma.md b/content/3.defense-systems/fs_sma.md
similarity index 94%
rename from content/3.defense-systems/sma.md
rename to content/3.defense-systems/fs_sma.md
index 5399d319..98d2c09f 100644
--- a/content/3.defense-systems/sma.md
+++ b/content/3.defense-systems/fs_sma.md
@@ -1,5 +1,5 @@
---
-title: SMA
+title: FS_Sma
layout: article
tableColumns:
article:
@@ -14,7 +14,7 @@ relevantAbstracts:
---
-# SMA
+# FS_Sma
## Description
SMA (single-protein MazF-like antiphage system) was identified in a phage-inducible chromosomal island (PICI) found in *Staphylococcus aureus* :ref{doi=10.1016/j.cell.2022.07.014}. SMA was shown to inhibit phage infection and to inhibit the formation of new virions after prophage induction.
@@ -23,18 +23,13 @@ SMA (single-protein MazF-like antiphage system) was identified in a phage-induci
The SMA protein comprises a domain analogous to MazF. MazF a protein that is normally part of the MazEF toxin-antitoxin systems, in which MazF is a toxic endoribonuclease that targets mRNA :ref{doi=10.1016/s1097-2765(03)00402-7}.
As far as we are aware, the precise molecular mechanism of SMA is unknown.
-## Example of genomic structure
-
-## Distribution of the system among prokaryotes
-
-
## Example of genomic structure
The Sma is composed of 1 protein: Sma.
Here is an example found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
The Sma system in *Staphylococcus aureus* (GCF_022869625.1, NZ_CP064365) is composed of 1 protein: Sma (WP_000041883.1)
@@ -44,19 +39,19 @@ Among the 22,803 complete genomes of RefSeq, the Sma is detected in 578 genomes
The system was detected in 20 different species.
-{max-width=750px}
+{max-width=750px}
Proportion of genome encoding the sma system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
-### sma
+### FS_Sma
::molstar-pdbe-plugin
---
height: 700
-dataUrl: /sma/sma__Sma-plddts_94.14969.pdb
+dataUrl: /fs_sma/FS_Sma__Sma-plddts_94.14969.pdb
---
::
diff --git a/public/sma/Distribution_sma.svg b/public/fs_sma/Distribution_FS_Sma.svg
similarity index 100%
rename from public/sma/Distribution_sma.svg
rename to public/fs_sma/Distribution_FS_Sma.svg
diff --git a/public/sma/sma.svg b/public/fs_sma/FS_Sma.svg
similarity index 100%
rename from public/sma/sma.svg
rename to public/fs_sma/FS_Sma.svg
diff --git a/public/sma/sma__Sma-plddts_94.14969.pdb b/public/fs_sma/FS_Sma__Sma-plddts_94.14969.pdb
similarity index 100%
rename from public/sma/sma__Sma-plddts_94.14969.pdb
rename to public/fs_sma/FS_Sma__Sma-plddts_94.14969.pdb
--
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