diff --git a/scripts/fill-local-meilisearch.sh b/scripts/fill-local-meilisearch.sh new file mode 100755 index 0000000000000000000000000000000000000000..cfd0aa4b422465f855d16ca9c92c81e4b4be5814 --- /dev/null +++ b/scripts/fill-local-meilisearch.sh @@ -0,0 +1,34 @@ +#!/bin/bash +# REFSEQ +df-wiki-cli meilisearch delete-all-documents refseq +df-wiki-cli meilisearch update --file ../data/refseq_res.csv --document refseq + + +# REF SEQ TAXO +df-wiki-cli content refseq-group-per-assembly --input ../data/refseq_res.csv --output /tmp/refseqtaxo.csv +df-wiki-cli meilisearch delete-all-documents refseqtaxo +df-wiki-cli meilisearch update --file /tmp/refseqtaxo.csv --document refseqtaxo + +# REFSEQ TAXO TYPE + +df-wiki-cli content refseq-group-per-assembly-and-type --input ../data/refseq_res.csv --output /tmp/refseqtaxotype.csv +df-wiki-cli meilisearch delete-all-documents refseqtaxotype +df-wiki-cli meilisearch update --file /tmp/refseqtaxotype.csv --document refseqtaxotype + + +# SANITIZED REFSEQ +df-wiki-cli content refseq-sanitized-hits --input ../data/refseq_res.csv --output /tmp/refseq-sanitized.csv + +df-wiki-cli meilisearch delete-all-documents refseqsanitized +df-wiki-cli meilisearch update --file /tmp/refseq-sanitized.csv --document refseqsanitized + +# systems +df-wiki-cli content systems --dir ../content/3.defense-systems/ --pfam ../public/pfam-a-hmm.csv --output /tmp/list-systems.json +df-wiki-cli meilisearch update --file /tmp/list-systems.json --document systems + +# STRUCTURE +df-wiki-cli meilisearch update --file ../data/all_predictions_statistics_clean.csv --document structure + +# ARTICLES +# df-wiki-cli meilisearch delete-all-documents article +# df-wiki-cli meilisearch