From 265695866cbc80cc602d88b4b7fbc3d846f21db4 Mon Sep 17 00:00:00 2001
From: Remi  PLANEL <rplanel@pasteur.fr>
Date: Fri, 29 Mar 2024 14:38:31 +0100
Subject: [PATCH] script to create local ms indexes

---
 scripts/fill-local-meilisearch.sh | 34 +++++++++++++++++++++++++++++++
 1 file changed, 34 insertions(+)
 create mode 100755 scripts/fill-local-meilisearch.sh

diff --git a/scripts/fill-local-meilisearch.sh b/scripts/fill-local-meilisearch.sh
new file mode 100755
index 00000000..cfd0aa4b
--- /dev/null
+++ b/scripts/fill-local-meilisearch.sh
@@ -0,0 +1,34 @@
+#!/bin/bash 
+# REFSEQ
+df-wiki-cli meilisearch delete-all-documents refseq
+df-wiki-cli meilisearch update --file ../data/refseq_res.csv --document refseq
+
+
+# REF SEQ TAXO
+df-wiki-cli content refseq-group-per-assembly --input ../data/refseq_res.csv --output /tmp/refseqtaxo.csv
+df-wiki-cli meilisearch delete-all-documents refseqtaxo
+df-wiki-cli meilisearch update --file /tmp/refseqtaxo.csv --document refseqtaxo
+
+# REFSEQ TAXO TYPE
+
+df-wiki-cli content refseq-group-per-assembly-and-type --input ../data/refseq_res.csv --output /tmp/refseqtaxotype.csv
+df-wiki-cli meilisearch delete-all-documents refseqtaxotype
+df-wiki-cli meilisearch  update --file /tmp/refseqtaxotype.csv --document refseqtaxotype
+
+
+# SANITIZED REFSEQ
+df-wiki-cli content refseq-sanitized-hits --input ../data/refseq_res.csv --output /tmp/refseq-sanitized.csv
+
+df-wiki-cli meilisearch delete-all-documents refseqsanitized
+df-wiki-cli meilisearch update --file /tmp/refseq-sanitized.csv --document refseqsanitized 
+
+# systems
+df-wiki-cli content systems --dir ../content/3.defense-systems/ --pfam ../public/pfam-a-hmm.csv --output /tmp/list-systems.json
+df-wiki-cli meilisearch update --file /tmp/list-systems.json --document systems
+
+# STRUCTURE 
+df-wiki-cli meilisearch update --file ../data/all_predictions_statistics_clean.csv --document structure
+
+# ARTICLES
+# df-wiki-cli meilisearch delete-all-documents article
+# df-wiki-cli meilisearch
-- 
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