diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 71e499645c2b87fe04a122d69458ffa98d63f670..2a57eacc906beff46b382832879f0c849e03b685 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -193,6 +193,24 @@ lint: MEILI_HOST: "http://localhost:7700" script: # - rm data/list-systems.json + # SYSTEM OPERON STRUCUTRE + - > + df-wiki-cli + meilisearch + delete-all-documents system-operon-structure + - > + df-wiki-cli + content + system-operon-structure + --tag "1.2.2" + --version "1.2.2" + --output data/system-structures.csv + - > + df-wiki-cli + meilisearch + update system-operon-structure + --file data/system-structures.csv + ###### REFSEQ # delete all document refseq - > @@ -304,25 +322,18 @@ lint: update systems --file data/list-systems.json # STRUCTURE + - > + df-wiki-cli + meilisearch + delete-all-documents structure - > df-wiki-cli meilisearch --host ${MEILI_HOST} --key "${MEILI_MASTER_KEY}" update structure - --file data/all_predictions_statistics_clean.csv + --file data/all_predictions_statistics.tsv - # SYSTEM OPERON STRUCUTRE - - > - df-wiki-cli - content - system-operon-structure - --version "1.2.4" --output data/system-structures.csv - - > - df-wiki-cli - meilisearch - update system-operon-structure - --file data/system-structures.csv # ARTICLES - >