From 26697615ee963e446059a49e86d02dfc176cf1bc Mon Sep 17 00:00:00 2001
From: Remi PLANEL <rplanel@pasteur.fr>
Date: Fri, 12 Apr 2024 15:08:16 +0200
Subject: [PATCH] update ci
---
.gitlab-ci.yml | 35 +++++++++++++++++++++++------------
1 file changed, 23 insertions(+), 12 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 71e49964..2a57eacc 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -193,6 +193,24 @@ lint:
MEILI_HOST: "http://localhost:7700"
script:
# - rm data/list-systems.json
+ # SYSTEM OPERON STRUCUTRE
+ - >
+ df-wiki-cli
+ meilisearch
+ delete-all-documents system-operon-structure
+ - >
+ df-wiki-cli
+ content
+ system-operon-structure
+ --tag "1.2.2"
+ --version "1.2.2"
+ --output data/system-structures.csv
+ - >
+ df-wiki-cli
+ meilisearch
+ update system-operon-structure
+ --file data/system-structures.csv
+
###### REFSEQ
# delete all document refseq
- >
@@ -304,25 +322,18 @@ lint:
update systems
--file data/list-systems.json
# STRUCTURE
+ - >
+ df-wiki-cli
+ meilisearch
+ delete-all-documents structure
- >
df-wiki-cli
meilisearch
--host ${MEILI_HOST}
--key "${MEILI_MASTER_KEY}"
update structure
- --file data/all_predictions_statistics_clean.csv
+ --file data/all_predictions_statistics.tsv
- # SYSTEM OPERON STRUCUTRE
- - >
- df-wiki-cli
- content
- system-operon-structure
- --version "1.2.4" --output data/system-structures.csv
- - >
- df-wiki-cli
- meilisearch
- update system-operon-structure
- --file data/system-structures.csv
# ARTICLES
- >
--
GitLab