From 2ffe49c0f7f4aa45cd24bf63d107ec55fd81bbeb Mon Sep 17 00:00:00 2001
From: Remi PLANEL <rplanel@pasteur.fr>
Date: Fri, 26 Apr 2024 11:51:07 +0200
Subject: [PATCH] fix bug when matrix one prot (need to look at
multimer(homodimer))
---
components/content/PdockqMatrix.vue | 18 +++++++-----------
1 file changed, 7 insertions(+), 11 deletions(-)
diff --git a/components/content/PdockqMatrix.vue b/components/content/PdockqMatrix.vue
index aa22e4f0..04552690 100644
--- a/components/content/PdockqMatrix.vue
+++ b/components/content/PdockqMatrix.vue
@@ -17,7 +17,7 @@ const { mobile } = useDisplay();
const { page } = useContent();
const dbName = "structure"
const filterBase = ref<string[]>([
- "prediction_type='multimer(dimer)'",
+ "prediction_type='multimer(dimer)' OR prediction_type='multimer(homodimer)'",
"completed='true'"
])
const structureTitle = ref("Structure")
@@ -77,15 +77,9 @@ function extractGeneName(name: string) {
const groupedPdocks = computed(() => {
const toValData = toValue(data)
- // const getSeqName = (d) => {
- // if (d.includes("__")) {
- // return d.split("__")[1]
- // } else {
- // return d
- // }
- // }
if (toValData?.hits) {
- return d3.groups(toValData.hits.flatMap(({ system, pDockQ, pdb, nb_sys, proteins_in_the_prediction, system_genes }) => {
+
+ const flattenMap = toValData.hits.flatMap(({ system, pDockQ, pdb, nb_sys, proteins_in_the_prediction, system_genes }) => {
if (proteins_in_the_prediction.length === 2) {
const sanitizedSystemGenes = system_genes.map(extractGeneName)
const sanitizedProteins = proteins_in_the_prediction.map(extractGeneName)
@@ -102,12 +96,14 @@ const groupedPdocks = computed(() => {
})
} else {
- return { key, system, system_genes: sanitizedSystemGenes, pDockQ, pdb, nb_sys, proteins_in_the_prediction: sanitizedProteins, protX: sanitizedProteins[0], protY: sanitizedProteins[1] }
+ return [{ key, system, system_genes: sanitizedSystemGenes, pDockQ, pdb, nb_sys, proteins_in_the_prediction: sanitizedProteins, protX: sanitizedProteins[0], protY: sanitizedProteins[1] }]
}
} else {
throw createError(`More than 2 proteins in a dimer structure for system ${computedSystem.value} !`)
}
- }), d => d.system_genes.sort().join(" / "))
+ })
+ const groups = d3.groups(flattenMap, d => d.system_genes.sort().join(" / "))
+ return groups
} else { return [] }
})
--
GitLab